data_4NFK
#
_model_server_result.job_id            u6_lEYsZ2OLGeGZAVPgDgw 
_model_server_result.datetime_utc      '2024-10-18 16:22:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4nfk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":402}' 
#
_entry.id    4NFK 
#
_exptl.entry_id    4NFK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              58.693 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NICKEL (II) ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4NFK 
_cell.length_a            110.94 
_cell.length_b            110.94 
_cell.length_c            68.46 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4NFK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 125 F ASP 103 1_555 B NI NI . F NI 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
metalc ? metalc2 A OD1 ASP 125 F ASP 103 1_555 D NI NI . F NI 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? 
metalc ? metalc3 A OD2 ASP 129 F ASP 107 1_555 B NI NI . F NI 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? 
metalc ? metalc4 A OD2 ASP 129 F ASP 107 1_555 D NI NI . F NI 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? 
metalc ? metalc5 A OD2 ASP 265 F ASP 243 1_555 C NI NI . F NI 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? 
metalc ? metalc6 B NI NI . F NI 401 1_555 E OAK JD5 . F JD5 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? 
metalc ? metalc7 B NI NI . F NI 401 1_555 G O HOH . F HOH 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? 
metalc ? metalc8 B NI NI . F NI 401 1_555 G O HOH . F HOH 520 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? 
metalc ? metalc9 B NI NI . F NI 401 1_555 G O HOH . F HOH 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? 
metalc ? metalc10 C NI NI . F NI 402 1_555 E OAP JD5 . F JD5 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.927 ? 
metalc ? metalc11 C NI NI . F NI 402 1_555 E OAL JD5 . F JD5 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
metalc ? metalc12 C NI NI . F NI 402 1_555 G O HOH . F HOH 522 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? 
metalc ? metalc13 C NI NI . F NI 402 1_555 G O HOH . F HOH 523 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? 
metalc ? metalc14 C NI NI . F NI 402 1_555 G O HOH . F HOH 524 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? 
metalc ? metalc15 D NI NI . F NI 403 1_555 E OAK JD5 . F JD5 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
metalc ? metalc16 D NI NI . F NI 403 1_555 E OAN JD5 . F JD5 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
metalc ? metalc17 D NI NI . F NI 403 1_555 G O HOH . F HOH 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? 
metalc ? metalc18 D NI NI . F NI 403 1_555 G O HOH . F HOH 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? 
#
_chem_comp.formula           'Ni 2' 
_chem_comp.formula_weight    58.693 
_chem_comp.id                NI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NICKEL (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4NFK 
_atom_sites.fract_transf_matrix[1][1]    0.009014 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009014 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014607 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NI F 1 401 1 NI NI . 
C 2 NI F 1 402 1 NI NI . 
D 2 NI F 1 403 1 NI NI . 
E 3 JD5 F 1 404 1 JD5 JD5 . 
F 4 SO4 F 1 405 1 SO4 SO4 . 
G 5 HOH F 1 501 1 HOH HOH . 
G 5 HOH F 2 502 2 HOH HOH . 
G 5 HOH F 3 503 3 HOH HOH . 
G 5 HOH F 4 504 4 HOH HOH . 
G 5 HOH F 5 505 5 HOH HOH . 
G 5 HOH F 6 506 6 HOH HOH . 
G 5 HOH F 7 507 7 HOH HOH . 
G 5 HOH F 8 508 8 HOH HOH . 
G 5 HOH F 9 509 9 HOH HOH . 
G 5 HOH F 10 510 10 HOH HOH . 
G 5 HOH F 11 511 11 HOH HOH . 
G 5 HOH F 12 512 12 HOH HOH . 
G 5 HOH F 13 513 13 HOH HOH . 
G 5 HOH F 14 514 14 HOH HOH . 
G 5 HOH F 15 515 15 HOH HOH . 
G 5 HOH F 16 516 16 HOH HOH . 
G 5 HOH F 17 517 17 HOH HOH . 
G 5 HOH F 18 518 18 HOH HOH . 
G 5 HOH F 19 519 19 HOH HOH . 
G 5 HOH F 20 520 20 HOH HOH . 
G 5 HOH F 21 521 21 HOH HOH . 
G 5 HOH F 22 522 22 HOH HOH . 
G 5 HOH F 23 523 23 HOH HOH . 
G 5 HOH F 24 524 24 HOH HOH . 
G 5 HOH F 25 525 25 HOH HOH . 
G 5 HOH F 26 526 26 HOH HOH . 
G 5 HOH F 27 527 27 HOH HOH . 
G 5 HOH F 28 528 28 HOH HOH . 
G 5 HOH F 29 529 29 HOH HOH . 
G 5 HOH F 30 530 30 HOH HOH . 
G 5 HOH F 31 531 31 HOH HOH . 
G 5 HOH F 32 532 32 HOH HOH . 
G 5 HOH F 33 533 33 HOH HOH . 
G 5 HOH F 34 534 34 HOH HOH . 
G 5 HOH F 35 535 35 HOH HOH . 
G 5 HOH F 36 536 36 HOH HOH . 
G 5 HOH F 37 537 37 HOH HOH . 
G 5 HOH F 38 538 38 HOH HOH . 
G 5 HOH F 39 539 39 HOH HOH . 
G 5 HOH F 40 540 40 HOH HOH . 
G 5 HOH F 41 541 41 HOH HOH . 
G 5 HOH F 42 542 42 HOH HOH . 
G 5 HOH F 43 543 43 HOH HOH . 
G 5 HOH F 44 544 44 HOH HOH . 
G 5 HOH F 45 545 45 HOH HOH . 
G 5 HOH F 46 546 46 HOH HOH . 
G 5 HOH F 47 547 47 HOH HOH . 
G 5 HOH F 48 548 48 HOH HOH . 
G 5 HOH F 49 549 49 HOH HOH . 
G 5 HOH F 50 550 50 HOH HOH . 
G 5 HOH F 51 551 51 HOH HOH . 
G 5 HOH F 52 552 52 HOH HOH . 
G 5 HOH F 53 553 53 HOH HOH . 
G 5 HOH F 54 554 54 HOH HOH . 
G 5 HOH F 55 555 55 HOH HOH . 
G 5 HOH F 56 556 56 HOH HOH . 
G 5 HOH F 57 557 57 HOH HOH . 
G 5 HOH F 58 558 58 HOH HOH . 
G 5 HOH F 59 559 59 HOH HOH . 
G 5 HOH F 60 560 60 HOH HOH . 
G 5 HOH F 61 561 61 HOH HOH . 
G 5 HOH F 62 562 62 HOH HOH . 
G 5 HOH F 63 563 63 HOH HOH . 
G 5 HOH F 64 564 64 HOH HOH . 
G 5 HOH F 65 565 65 HOH HOH . 
G 5 HOH F 66 566 66 HOH HOH . 
G 5 HOH F 67 567 67 HOH HOH . 
G 5 HOH F 68 568 68 HOH HOH . 
G 5 HOH F 69 569 69 HOH HOH . 
G 5 HOH F 70 570 70 HOH HOH . 
G 5 HOH F 71 571 71 HOH HOH . 
G 5 HOH F 72 572 72 HOH HOH . 
G 5 HOH F 73 573 73 HOH HOH . 
G 5 HOH F 74 574 74 HOH HOH . 
G 5 HOH F 75 575 75 HOH HOH . 
G 5 HOH F 76 576 76 HOH HOH . 
G 5 HOH F 77 577 77 HOH HOH . 
G 5 HOH F 78 578 78 HOH HOH . 
G 5 HOH F 79 579 79 HOH HOH . 
G 5 HOH F 80 580 80 HOH HOH . 
G 5 HOH F 81 581 81 HOH HOH . 
G 5 HOH F 82 582 82 HOH HOH . 
G 5 HOH F 83 583 83 HOH HOH . 
G 5 HOH F 84 584 84 HOH HOH . 
G 5 HOH F 85 585 85 HOH HOH . 
G 5 HOH F 86 586 86 HOH HOH . 
G 5 HOH F 87 587 87 HOH HOH . 
G 5 HOH F 88 588 88 HOH HOH . 
G 5 HOH F 89 589 89 HOH HOH . 
G 5 HOH F 90 590 90 HOH HOH . 
G 5 HOH F 91 591 91 HOH HOH . 
G 5 HOH F 92 592 92 HOH HOH . 
G 5 HOH F 93 593 93 HOH HOH . 
G 5 HOH F 94 594 94 HOH HOH . 
G 5 HOH F 95 595 95 HOH HOH . 
G 5 HOH F 96 596 96 HOH HOH . 
G 5 HOH F 97 597 97 HOH HOH . 
G 5 HOH F 98 598 98 HOH HOH . 
G 5 HOH F 99 599 99 HOH HOH . 
G 5 HOH F 100 600 100 HOH HOH . 
G 5 HOH F 101 601 101 HOH HOH . 
G 5 HOH F 102 602 102 HOH HOH . 
G 5 HOH F 103 603 103 HOH HOH . 
G 5 HOH F 104 604 104 HOH HOH . 
G 5 HOH F 105 605 105 HOH HOH . 
G 5 HOH F 106 606 106 HOH HOH . 
G 5 HOH F 107 607 107 HOH HOH . 
G 5 HOH F 108 608 108 HOH HOH . 
G 5 HOH F 109 609 109 HOH HOH . 
G 5 HOH F 110 610 110 HOH HOH . 
G 5 HOH F 111 611 111 HOH HOH . 
G 5 HOH F 112 612 112 HOH HOH . 
G 5 HOH F 113 613 113 HOH HOH . 
G 5 HOH F 114 614 114 HOH HOH . 
G 5 HOH F 115 615 115 HOH HOH . 
G 5 HOH F 116 616 116 HOH HOH . 
G 5 HOH F 117 617 117 HOH HOH . 
G 5 HOH F 118 618 118 HOH HOH . 
G 5 HOH F 119 619 119 HOH HOH . 
G 5 HOH F 120 620 120 HOH HOH . 
G 5 HOH F 121 621 121 HOH HOH . 
G 5 HOH F 122 622 122 HOH HOH . 
G 5 HOH F 123 623 123 HOH HOH . 
G 5 HOH F 124 624 124 HOH HOH . 
G 5 HOH F 125 625 125 HOH HOH . 
G 5 HOH F 126 626 126 HOH HOH . 
G 5 HOH F 127 627 127 HOH HOH . 
G 5 HOH F 128 628 128 HOH HOH . 
G 5 HOH F 129 629 129 HOH HOH . 
G 5 HOH F 130 630 130 HOH HOH . 
G 5 HOH F 131 631 131 HOH HOH . 
G 5 HOH F 132 632 132 HOH HOH . 
G 5 HOH F 133 633 133 HOH HOH . 
G 5 HOH F 134 634 134 HOH HOH . 
G 5 HOH F 135 635 135 HOH HOH . 
G 5 HOH F 136 636 136 HOH HOH . 
G 5 HOH F 137 637 137 HOH HOH . 
G 5 HOH F 138 638 138 HOH HOH . 
G 5 HOH F 139 639 139 HOH HOH . 
G 5 HOH F 140 640 140 HOH HOH . 
G 5 HOH F 141 641 141 HOH HOH . 
G 5 HOH F 142 642 142 HOH HOH . 
G 5 HOH F 143 643 143 HOH HOH . 
G 5 HOH F 144 644 144 HOH HOH . 
G 5 HOH F 145 645 145 HOH HOH . 
G 5 HOH F 146 646 146 HOH HOH . 
G 5 HOH F 147 647 147 HOH HOH . 
G 5 HOH F 148 648 148 HOH HOH . 
G 5 HOH F 149 649 149 HOH HOH . 
G 5 HOH F 150 650 150 HOH HOH . 
G 5 HOH F 151 651 151 HOH HOH . 
G 5 HOH F 152 652 152 HOH HOH . 
G 5 HOH F 153 653 153 HOH HOH . 
G 5 HOH F 154 654 154 HOH HOH . 
G 5 HOH F 155 655 155 HOH HOH . 
G 5 HOH F 156 656 156 HOH HOH . 
G 5 HOH F 157 657 157 HOH HOH . 
G 5 HOH F 158 658 158 HOH HOH . 
G 5 HOH F 159 659 159 HOH HOH . 
G 5 HOH F 160 660 160 HOH HOH . 
G 5 HOH F 161 661 161 HOH HOH . 
G 5 HOH F 162 662 162 HOH HOH . 
G 5 HOH F 163 663 163 HOH HOH . 
G 5 HOH F 164 664 164 HOH HOH . 
G 5 HOH F 165 665 165 HOH HOH . 
G 5 HOH F 166 666 166 HOH HOH . 
G 5 HOH F 167 667 167 HOH HOH . 
G 5 HOH F 168 668 168 HOH HOH . 
G 5 HOH F 169 669 169 HOH HOH . 
G 5 HOH F 170 670 170 HOH HOH . 
G 5 HOH F 171 671 171 HOH HOH . 
G 5 HOH F 172 672 172 HOH HOH . 
G 5 HOH F 173 673 173 HOH HOH . 
G 5 HOH F 174 674 174 HOH HOH . 
G 5 HOH F 175 675 175 HOH HOH . 
G 5 HOH F 176 676 176 HOH HOH . 
G 5 HOH F 177 677 177 HOH HOH . 
G 5 HOH F 178 678 178 HOH HOH . 
G 5 HOH F 179 679 179 HOH HOH . 
G 5 HOH F 180 680 180 HOH HOH . 
G 5 HOH F 181 681 181 HOH HOH . 
G 5 HOH F 182 682 182 HOH HOH . 
G 5 HOH F 183 683 183 HOH HOH . 
G 5 HOH F 184 684 184 HOH HOH . 
G 5 HOH F 185 685 185 HOH HOH . 
G 5 HOH F 186 686 186 HOH HOH . 
G 5 HOH F 187 687 187 HOH HOH . 
G 5 HOH F 188 688 188 HOH HOH . 
G 5 HOH F 189 689 189 HOH HOH . 
G 5 HOH F 190 690 190 HOH HOH . 
G 5 HOH F 191 691 191 HOH HOH . 
G 5 HOH F 192 692 192 HOH HOH . 
G 5 HOH F 193 693 193 HOH HOH . 
G 5 HOH F 194 694 194 HOH HOH . 
G 5 HOH F 195 695 195 HOH HOH . 
G 5 HOH F 196 696 196 HOH HOH . 
G 5 HOH F 197 697 197 HOH HOH . 
G 5 HOH F 198 698 198 HOH HOH . 
G 5 HOH F 199 699 199 HOH HOH . 
G 5 HOH F 200 700 200 HOH HOH . 
G 5 HOH F 201 701 201 HOH HOH . 
G 5 HOH F 202 702 202 HOH HOH . 
G 5 HOH F 203 703 203 HOH HOH . 
G 5 HOH F 204 704 204 HOH HOH . 
G 5 HOH F 205 705 205 HOH HOH . 
G 5 HOH F 206 706 206 HOH HOH . 
G 5 HOH F 207 707 207 HOH HOH . 
G 5 HOH F 208 708 208 HOH HOH . 
G 5 HOH F 209 709 209 HOH HOH . 
G 5 HOH F 210 710 210 HOH HOH . 
G 5 HOH F 211 711 211 HOH HOH . 
G 5 HOH F 212 712 212 HOH HOH . 
G 5 HOH F 213 713 213 HOH HOH . 
G 5 HOH F 214 714 214 HOH HOH . 
G 5 HOH F 215 715 215 HOH HOH . 
G 5 HOH F 216 716 216 HOH HOH . 
G 5 HOH F 217 717 217 HOH HOH . 
G 5 HOH F 218 718 218 HOH HOH . 
G 5 HOH F 219 719 219 HOH HOH . 
G 5 HOH F 220 720 220 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NI 
_atom_site.label_atom_id         NI 
_atom_site.label_comp_id         NI 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               15.413 
_atom_site.Cartn_y               36.944 
_atom_site.Cartn_z               -10.331 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        27.64 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NI 
_atom_site.auth_comp_id          NI 
_atom_site.auth_seq_id           402 
_atom_site.auth_asym_id          F 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           243 
_model_server_stats.encode_time_ms          15 
_model_server_stats.element_count           1 
#