data_4NGG # _model_server_result.job_id J5LsA-ALTLbkLOmu8NYgXQ _model_server_result.datetime_utc '2025-07-18 01:14:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ngg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1101}' # _entry.id 4NGG # _exptl.entry_id 4NGG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4NGG _cell.length_a 85.897 _cell.length_b 97.24 _cell.length_c 106.766 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4NGG _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression B 1 1 A,B,C,D 1 2 A,B,C,D 2 2,1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'crystal symmetry operation' 4_565 x,-y+1,-z 1 0 0 0 -1 0 0 0 -1 0 97.24 0 2 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog 'A-U PAIR' hydrog1 B N6 A 1 B A 1 1_555 B O4 U 12 B U 12 4_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N1 G 2 B G 2 1_555 B N3 C 11 B C 11 4_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B N2 G 2 B G 2 1_555 B O2 C 11 B C 11 4_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B O6 G 2 B G 2 1_555 B N4 C 11 B C 11 4_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B N3 C 3 B C 3 1_555 B N1 G 10 B G 10 4_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B N4 C 3 B C 3 1_555 B O6 G 10 B G 10 4_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B O2 C 3 B C 3 1_555 B N2 G 10 B G 10 4_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B N1 G 4 B G 4 1_555 B N3 C 9 B C 9 4_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B N2 G 4 B G 4 1_555 B O2 C 9 B C 9 4_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B O6 G 4 B G 4 1_555 B N4 C 9 B C 9 4_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B N1 A 5 B A 5 1_555 B N3 U 8 B U 8 4_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B N6 A 5 B A 5 1_555 B O4 U 8 B U 8 4_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B N1 A 6 B A 6 1_555 B N3 U 7 B U 7 4_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B N6 A 6 B A 6 1_555 B O4 U 7 B U 7 4_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B N3 U 7 B U 7 1_555 B N1 A 6 B A 6 4_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B O4 U 7 B U 7 1_555 B N6 A 6 B A 6 4_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B N3 U 8 B U 8 1_555 B N1 A 5 B A 5 4_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B O4 U 8 B U 8 1_555 B N6 A 5 B A 5 4_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 B N3 C 9 B C 9 1_555 B N1 G 4 B G 4 4_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 B N4 C 9 B C 9 1_555 B O6 G 4 B G 4 4_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 B O2 C 9 B C 9 1_555 B N2 G 4 B G 4 4_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 B N1 G 10 B G 10 1_555 B N3 C 3 B C 3 4_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 B N2 G 10 B G 10 1_555 B O2 C 3 B C 3 4_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 B O6 G 10 B G 10 1_555 B N4 C 3 B C 3 4_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 B N3 C 11 B C 11 1_555 B N1 G 2 B G 2 4_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 B N4 C 11 B C 11 1_555 B O6 G 2 B G 2 4_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 B O2 C 11 B C 11 1_555 B N2 G 2 B G 2 4_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'U-A PAIR' hydrog28 B O4 U 12 B U 12 1_555 B N6 A 1 B A 1 4_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 375 n n P O2 PO4 sing 376 n n P O3 PO4 sing 377 n n P O4 PO4 sing 378 n n # _atom_sites.entry_id 4NGG _atom_sites.fract_transf_matrix[1][1] 0.011642 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010284 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009366 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PO4 A 1 1101 1 PO4 PO4 . D 4 HOH A 1 1201 1 HOH HOH . D 4 HOH A 2 1202 2 HOH HOH . D 4 HOH A 3 1203 3 HOH HOH . D 4 HOH A 4 1204 4 HOH HOH . D 4 HOH A 5 1205 5 HOH HOH . D 4 HOH A 6 1206 6 HOH HOH . D 4 HOH A 7 1207 7 HOH HOH . D 4 HOH A 8 1208 8 HOH HOH . D 4 HOH A 9 1209 9 HOH HOH . D 4 HOH A 10 1210 10 HOH HOH . D 4 HOH A 11 1211 11 HOH HOH . D 4 HOH A 12 1212 12 HOH HOH . D 4 HOH A 13 1213 13 HOH HOH . D 4 HOH A 14 1214 14 HOH HOH . D 4 HOH A 15 1215 15 HOH HOH . D 4 HOH A 16 1216 16 HOH HOH . D 4 HOH A 17 1217 17 HOH HOH . D 4 HOH A 18 1218 18 HOH HOH . D 4 HOH A 19 1219 19 HOH HOH . D 4 HOH A 20 1220 20 HOH HOH . D 4 HOH A 21 1221 21 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . C 3 -15.28 33.258 21.284 1 84.28 ? P PO4 1101 A 1 HETATM 2 O O1 PO4 . . . C 3 -15.234 33.021 19.798 1 90.34 ? O1 PO4 1101 A 1 HETATM 3 O O2 PO4 . . . C 3 -15.52 34.72 21.526 1 93.03 ? O2 PO4 1101 A 1 HETATM 4 O O3 PO4 . . . C 3 -16.39 32.444 21.91 1 81.53 ? O3 PO4 1101 A 1 HETATM 5 O O4 PO4 . . . C 3 -13.97 32.872 21.904 1 66.3 ? O4 PO4 1101 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #