data_4NGU # _model_server_result.job_id u_YQ8qXbZT7WiFs7-Jx0KQ _model_server_result.datetime_utc '2024-10-28 02:24:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ngu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 4NGU # _exptl.entry_id 4NGU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 89.093 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description D-ALANINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4NGU _cell.length_a 91.607 _cell.length_b 91.607 _cell.length_c 129.027 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4NGU _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 2 A MSE 29 1_555 A N ALA 3 A ALA 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C ALA 5 A ALA 32 1_555 A N MSE 6 A MSE 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale3 A C MSE 6 A MSE 33 1_555 A N THR 7 A THR 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 A C LYS 9 A LYS 36 1_555 A N MSE 10 A MSE 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale5 A C MSE 10 A MSE 37 1_555 A N SER 11 A SER 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 A C ARG 58 A ARG 85 1_555 A N MSE 59 A MSE 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale7 A C MSE 59 A MSE 86 1_555 A N GLU 60 A GLU 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale8 A C VAL 62 A VAL 89 1_555 A N MSE 63 A MSE 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale9 A C MSE 63 A MSE 90 1_555 A N THR 64 A THR 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale10 A C PRO 66 A PRO 93 1_555 A N MSE 67 A MSE 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale11 A C MSE 67 A MSE 94 1_555 A N ILE 68 A ILE 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale12 A C GLY 75 A GLY 102 1_555 A N MSE 76 A MSE 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale13 A C MSE 76 A MSE 103 1_555 A N GLU 77 A GLU 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale14 A C GLU 82 A GLU 109 1_555 A N MSE 83 A MSE 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale15 A C MSE 83 A MSE 110 1_555 A N PHE 84 A PHE 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale16 A C PHE 90 A PHE 117 1_555 A N MSE 91 A MSE 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale17 A C MSE 91 A MSE 118 1_555 A N PHE 92 A PHE 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale18 A C PHE 107 A PHE 134 1_555 A N MSE 108 A MSE 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale19 A C MSE 108 A MSE 135 1_555 A N ASP 109 A ASP 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale20 A C GLY 149 A GLY 176 1_555 A N MSE 150 A MSE 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale21 A C MSE 150 A MSE 177 1_555 A N LYS 151 A LYS 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale22 A C ALA 154 A ALA 181 1_555 A N MSE 155 A MSE 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale23 A C MSE 155 A MSE 182 1_555 A N ASP 156 A ASP 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale24 A C ALA 161 A ALA 188 1_555 A N MSE 162 A MSE 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale25 A C MSE 162 A MSE 189 1_555 A N TYR 163 A TYR 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale26 A C GLN 190 A GLN 217 1_555 A N MSE 191 A MSE 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale27 A C MSE 191 A MSE 218 1_555 A N ASN 192 A ASN 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale28 A C GLY 269 A GLY 296 1_555 A N MSE 270 A MSE 297 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale29 A C MSE 270 A MSE 297 1_555 A N THR 271 A THR 298 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale30 A C ALA 307 A ALA 334 1_555 A N MSE 308 A MSE 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.31 ? covale ? covale31 A C MSE 308 A MSE 335 1_555 A N GLU 309 A GLU 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.297 ? covale ? covale32 C C DAL . A DAL 402 1_555 D N DAL . A DAL 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? # _chem_comp.formula 'C3 H7 N O2' _chem_comp.formula_weight 89.093 _chem_comp.id DAL _chem_comp.mon_nstd_flag . _chem_comp.name D-ALANINE _chem_comp.type 'd-peptide linking' _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4NGU _atom_sites.fract_transf_matrix[1][1] 0.010916 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010916 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00775 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 401 1 CL CL . C 3 DAL A 1 402 1 DAL DAL . D 3 DAL A 1 403 2 DAL DAL . E 4 SO4 A 1 404 1 SO4 SO4 . F 5 HOH A 1 501 2 HOH HOH . F 5 HOH A 2 502 5 HOH HOH . F 5 HOH A 3 503 6 HOH HOH . F 5 HOH A 4 504 7 HOH HOH . F 5 HOH A 5 505 8 HOH HOH . F 5 HOH A 6 506 9 HOH HOH . F 5 HOH A 7 507 10 HOH HOH . F 5 HOH A 8 508 11 HOH HOH . F 5 HOH A 9 509 12 HOH HOH . F 5 HOH A 10 510 13 HOH HOH . F 5 HOH A 11 511 14 HOH HOH . F 5 HOH A 12 512 15 HOH HOH . F 5 HOH A 13 513 16 HOH HOH . F 5 HOH A 14 514 17 HOH HOH . F 5 HOH A 15 515 20 HOH HOH . F 5 HOH A 16 516 21 HOH HOH . F 5 HOH A 17 517 22 HOH HOH . F 5 HOH A 18 518 23 HOH HOH . F 5 HOH A 19 519 24 HOH HOH . F 5 HOH A 20 520 25 HOH HOH . F 5 HOH A 21 521 26 HOH HOH . F 5 HOH A 22 522 27 HOH HOH . F 5 HOH A 23 523 28 HOH HOH . F 5 HOH A 24 524 29 HOH HOH . F 5 HOH A 25 525 30 HOH HOH . F 5 HOH A 26 526 32 HOH HOH . F 5 HOH A 27 527 33 HOH HOH . F 5 HOH A 28 528 34 HOH HOH . F 5 HOH A 29 529 37 HOH HOH . F 5 HOH A 30 530 38 HOH HOH . F 5 HOH A 31 531 39 HOH HOH . F 5 HOH A 32 532 41 HOH HOH . F 5 HOH A 33 533 42 HOH HOH . F 5 HOH A 34 534 43 HOH HOH . F 5 HOH A 35 535 44 HOH HOH . F 5 HOH A 36 536 45 HOH HOH . F 5 HOH A 37 537 47 HOH HOH . F 5 HOH A 38 538 48 HOH HOH . F 5 HOH A 39 539 49 HOH HOH . F 5 HOH A 40 540 51 HOH HOH . F 5 HOH A 41 541 52 HOH HOH . F 5 HOH A 42 542 53 HOH HOH . F 5 HOH A 43 543 54 HOH HOH . F 5 HOH A 44 544 55 HOH HOH . F 5 HOH A 45 545 56 HOH HOH . F 5 HOH A 46 546 58 HOH HOH . F 5 HOH A 47 547 59 HOH HOH . F 5 HOH A 48 548 61 HOH HOH . F 5 HOH A 49 549 62 HOH HOH . F 5 HOH A 50 550 63 HOH HOH . F 5 HOH A 51 551 64 HOH HOH . F 5 HOH A 52 552 65 HOH HOH . F 5 HOH A 53 553 66 HOH HOH . F 5 HOH A 54 554 67 HOH HOH . F 5 HOH A 55 555 68 HOH HOH . F 5 HOH A 56 556 69 HOH HOH . F 5 HOH A 57 557 70 HOH HOH . F 5 HOH A 58 558 71 HOH HOH . F 5 HOH A 59 559 72 HOH HOH . F 5 HOH A 60 560 73 HOH HOH . F 5 HOH A 61 561 74 HOH HOH . F 5 HOH A 62 562 76 HOH HOH . F 5 HOH A 63 563 77 HOH HOH . F 5 HOH A 64 564 78 HOH HOH . F 5 HOH A 65 565 79 HOH HOH . F 5 HOH A 66 566 80 HOH HOH . F 5 HOH A 67 567 81 HOH HOH . F 5 HOH A 68 568 82 HOH HOH . F 5 HOH A 69 569 83 HOH HOH . F 5 HOH A 70 570 85 HOH HOH . F 5 HOH A 71 571 86 HOH HOH . F 5 HOH A 72 572 87 HOH HOH . F 5 HOH A 73 573 88 HOH HOH . F 5 HOH A 74 574 89 HOH HOH . F 5 HOH A 75 575 91 HOH HOH . F 5 HOH A 76 576 92 HOH HOH . F 5 HOH A 77 577 93 HOH HOH . F 5 HOH A 78 578 94 HOH HOH . F 5 HOH A 79 579 95 HOH HOH . F 5 HOH A 80 580 96 HOH HOH . F 5 HOH A 81 581 97 HOH HOH . F 5 HOH A 82 582 98 HOH HOH . F 5 HOH A 83 583 99 HOH HOH . F 5 HOH A 84 584 101 HOH HOH . F 5 HOH A 85 585 102 HOH HOH . F 5 HOH A 86 586 104 HOH HOH . F 5 HOH A 87 587 106 HOH HOH . F 5 HOH A 88 588 107 HOH HOH . F 5 HOH A 89 589 108 HOH HOH . F 5 HOH A 90 590 109 HOH HOH . F 5 HOH A 91 591 110 HOH HOH . F 5 HOH A 92 592 113 HOH HOH . F 5 HOH A 93 593 114 HOH HOH . F 5 HOH A 94 594 116 HOH HOH . F 5 HOH A 95 595 117 HOH HOH . F 5 HOH A 96 596 118 HOH HOH . F 5 HOH A 97 597 120 HOH HOH . F 5 HOH A 98 598 121 HOH HOH . F 5 HOH A 99 599 123 HOH HOH . F 5 HOH A 100 600 124 HOH HOH . F 5 HOH A 101 601 128 HOH HOH . F 5 HOH A 102 602 129 HOH HOH . F 5 HOH A 103 603 130 HOH HOH . F 5 HOH A 104 604 131 HOH HOH . F 5 HOH A 105 605 132 HOH HOH . F 5 HOH A 106 606 133 HOH HOH . F 5 HOH A 107 607 134 HOH HOH . F 5 HOH A 108 608 135 HOH HOH . F 5 HOH A 109 609 136 HOH HOH . F 5 HOH A 110 610 137 HOH HOH . F 5 HOH A 111 611 138 HOH HOH . F 5 HOH A 112 612 139 HOH HOH . F 5 HOH A 113 613 140 HOH HOH . F 5 HOH A 114 614 141 HOH HOH . F 5 HOH A 115 615 142 HOH HOH . F 5 HOH A 116 616 143 HOH HOH . F 5 HOH A 117 617 144 HOH HOH . F 5 HOH A 118 618 145 HOH HOH . F 5 HOH A 119 619 146 HOH HOH . F 5 HOH A 120 620 148 HOH HOH . F 5 HOH A 121 621 149 HOH HOH . F 5 HOH A 122 622 150 HOH HOH . F 5 HOH A 123 623 151 HOH HOH . F 5 HOH A 124 624 152 HOH HOH . F 5 HOH A 125 625 154 HOH HOH . F 5 HOH A 126 626 155 HOH HOH . F 5 HOH A 127 627 156 HOH HOH . F 5 HOH A 128 628 157 HOH HOH . F 5 HOH A 129 629 158 HOH HOH . F 5 HOH A 130 630 159 HOH HOH . F 5 HOH A 131 631 160 HOH HOH . F 5 HOH A 132 632 161 HOH HOH . F 5 HOH A 133 633 162 HOH HOH . F 5 HOH A 134 634 163 HOH HOH . F 5 HOH A 135 635 164 HOH HOH . F 5 HOH A 136 636 165 HOH HOH . F 5 HOH A 137 637 167 HOH HOH . F 5 HOH A 138 638 168 HOH HOH . F 5 HOH A 139 639 169 HOH HOH . F 5 HOH A 140 640 171 HOH HOH . F 5 HOH A 141 641 172 HOH HOH . F 5 HOH A 142 642 173 HOH HOH . F 5 HOH A 143 643 174 HOH HOH . F 5 HOH A 144 644 175 HOH HOH . F 5 HOH A 145 645 176 HOH HOH . F 5 HOH A 146 646 177 HOH HOH . F 5 HOH A 147 647 178 HOH HOH . F 5 HOH A 148 648 179 HOH HOH . F 5 HOH A 149 649 180 HOH HOH . F 5 HOH A 150 650 181 HOH HOH . F 5 HOH A 151 651 182 HOH HOH . F 5 HOH A 152 652 183 HOH HOH . F 5 HOH A 153 653 184 HOH HOH . F 5 HOH A 154 654 186 HOH HOH . F 5 HOH A 155 655 187 HOH HOH . F 5 HOH A 156 656 188 HOH HOH . F 5 HOH A 157 657 189 HOH HOH . F 5 HOH A 158 658 190 HOH HOH . F 5 HOH A 159 659 191 HOH HOH . F 5 HOH A 160 660 192 HOH HOH . F 5 HOH A 161 661 193 HOH HOH . F 5 HOH A 162 662 194 HOH HOH . F 5 HOH A 163 663 195 HOH HOH . F 5 HOH A 164 664 196 HOH HOH . F 5 HOH A 165 665 197 HOH HOH . F 5 HOH A 166 666 198 HOH HOH . F 5 HOH A 167 667 199 HOH HOH . F 5 HOH A 168 668 200 HOH HOH . F 5 HOH A 169 669 201 HOH HOH . F 5 HOH A 170 670 202 HOH HOH . F 5 HOH A 171 671 203 HOH HOH . F 5 HOH A 172 672 204 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N DAL . . . C 3 46.533 73.405 36.412 1 6.42 ? N DAL 402 A 1 HETATM 2 C CA DAL . . . C 3 46.932 74.362 35.37 1 8.1 ? CA DAL 402 A 1 HETATM 3 C CB DAL . . . C 3 48.455 74.427 35.24 1 7.7 ? CB DAL 402 A 1 HETATM 4 C C DAL . . . C 3 46.389 75.75 35.716 1 6.74 ? C DAL 402 A 1 HETATM 5 O O DAL . . . C 3 46.191 76.08 36.884 1 6.98 ? O DAL 402 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 5 #