data_4NGW # _model_server_result.job_id xveuHZm74lbLLV6RgOVYSA _model_server_result.datetime_utc '2024-11-08 03:21:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ngw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 4NGW # _exptl.entry_id 4NGW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 173.04 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'YTTERBIUM (III) ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4NGW _cell.length_a 78.665 _cell.length_b 78.665 _cell.length_c 37.129 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4NGW _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc1 A OD1 ASN 46 A ASN 46 1_555 B YB YB . A YB 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc2 A OD2 ASP 87 A ASP 87 1_555 D YB YB . A YB 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc3 A OXT LEU 129 A LEU 129 1_555 C YB YB . A YB 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc4 A O LEU 129 A LEU 129 1_555 C YB YB . A YB 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc5 B YB YB . A YB 201 1_555 G O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc6 B YB YB . A YB 201 1_555 G O HOH . A HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc7 B YB YB . A YB 201 1_555 G O HOH . A HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc8 B YB YB . A YB 201 1_555 G O HOH . A HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc9 C YB YB . A YB 202 1_555 G O HOH . A HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc10 D YB YB . A YB 203 1_555 G O HOH . A HOH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc11 D YB YB . A YB 203 1_555 G O HOH . A HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.365 ? metalc ? metalc12 D YB YB . A YB 203 1_555 G O HOH . A HOH 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? # _chem_comp.formula 'Yb 3' _chem_comp.formula_weight 173.04 _chem_comp.id YB _chem_comp.mon_nstd_flag . _chem_comp.name 'YTTERBIUM (III) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4NGW _atom_sites.fract_transf_matrix[1][1] 0.012712 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012712 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026933 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 YB A 1 201 201 YB YB . C 2 YB A 1 202 202 YB YB . D 2 YB A 1 203 203 YB YB . E 3 CL A 1 204 204 CL CL . F 3 CL A 1 205 205 CL CL . G 4 HOH A 1 301 301 HOH HOH . G 4 HOH A 2 302 302 HOH HOH . G 4 HOH A 3 303 303 HOH HOH . G 4 HOH A 4 304 304 HOH HOH . G 4 HOH A 5 305 305 HOH HOH . G 4 HOH A 6 306 307 HOH HOH . G 4 HOH A 7 307 308 HOH HOH . G 4 HOH A 8 308 309 HOH HOH . G 4 HOH A 9 309 311 HOH HOH . G 4 HOH A 10 310 312 HOH HOH . G 4 HOH A 11 311 313 HOH HOH . G 4 HOH A 12 312 314 HOH HOH . G 4 HOH A 13 313 315 HOH HOH . G 4 HOH A 14 314 316 HOH HOH . G 4 HOH A 15 315 317 HOH HOH . G 4 HOH A 16 316 318 HOH HOH . G 4 HOH A 17 317 319 HOH HOH . G 4 HOH A 18 318 320 HOH HOH . G 4 HOH A 19 319 321 HOH HOH . G 4 HOH A 20 320 322 HOH HOH . G 4 HOH A 21 321 323 HOH HOH . G 4 HOH A 22 322 324 HOH HOH . G 4 HOH A 23 323 325 HOH HOH . G 4 HOH A 24 324 326 HOH HOH . G 4 HOH A 25 325 327 HOH HOH . G 4 HOH A 26 326 328 HOH HOH . G 4 HOH A 27 327 329 HOH HOH . G 4 HOH A 28 328 330 HOH HOH . G 4 HOH A 29 329 331 HOH HOH . G 4 HOH A 30 330 332 HOH HOH . G 4 HOH A 31 331 333 HOH HOH . G 4 HOH A 32 332 334 HOH HOH . G 4 HOH A 33 333 335 HOH HOH . G 4 HOH A 34 334 336 HOH HOH . G 4 HOH A 35 335 337 HOH HOH . G 4 HOH A 36 336 338 HOH HOH . G 4 HOH A 37 337 339 HOH HOH . G 4 HOH A 38 338 340 HOH HOH . G 4 HOH A 39 339 341 HOH HOH . G 4 HOH A 40 340 342 HOH HOH . G 4 HOH A 41 341 343 HOH HOH . G 4 HOH A 42 342 344 HOH HOH . G 4 HOH A 43 343 345 HOH HOH . G 4 HOH A 44 344 346 HOH HOH . G 4 HOH A 45 345 347 HOH HOH . G 4 HOH A 46 346 348 HOH HOH . G 4 HOH A 47 347 349 HOH HOH . G 4 HOH A 48 348 350 HOH HOH . G 4 HOH A 49 349 351 HOH HOH . G 4 HOH A 50 350 352 HOH HOH . G 4 HOH A 51 351 353 HOH HOH . G 4 HOH A 52 352 354 HOH HOH . G 4 HOH A 53 353 355 HOH HOH . G 4 HOH A 54 354 356 HOH HOH . G 4 HOH A 55 355 357 HOH HOH . G 4 HOH A 56 356 358 HOH HOH . G 4 HOH A 57 357 359 HOH HOH . G 4 HOH A 58 358 360 HOH HOH . G 4 HOH A 59 359 361 HOH HOH . G 4 HOH A 60 360 362 HOH HOH . G 4 HOH A 61 361 363 HOH HOH . G 4 HOH A 62 362 364 HOH HOH . G 4 HOH A 63 363 365 HOH HOH . G 4 HOH A 64 364 366 HOH HOH . G 4 HOH A 65 365 367 HOH HOH . G 4 HOH A 66 366 368 HOH HOH . G 4 HOH A 67 367 369 HOH HOH . G 4 HOH A 68 368 370 HOH HOH . G 4 HOH A 69 369 371 HOH HOH . G 4 HOH A 70 370 372 HOH HOH . G 4 HOH A 71 371 373 HOH HOH . G 4 HOH A 72 372 374 HOH HOH . G 4 HOH A 73 373 376 HOH HOH . G 4 HOH A 74 374 377 HOH HOH . G 4 HOH A 75 375 378 HOH HOH . G 4 HOH A 76 376 379 HOH HOH . G 4 HOH A 77 377 380 HOH HOH . G 4 HOH A 78 378 382 HOH HOH . G 4 HOH A 79 379 383 HOH HOH . G 4 HOH A 80 380 384 HOH HOH . G 4 HOH A 81 381 385 HOH HOH . G 4 HOH A 82 382 386 HOH HOH . G 4 HOH A 83 383 388 HOH HOH . G 4 HOH A 84 384 389 HOH HOH . G 4 HOH A 85 385 390 HOH HOH . G 4 HOH A 86 386 391 HOH HOH . G 4 HOH A 87 387 393 HOH HOH . G 4 HOH A 88 388 394 HOH HOH . G 4 HOH A 89 389 395 HOH HOH . G 4 HOH A 90 390 396 HOH HOH . G 4 HOH A 91 391 397 HOH HOH . G 4 HOH A 92 392 398 HOH HOH . G 4 HOH A 93 393 399 HOH HOH . G 4 HOH A 94 394 402 HOH HOH . G 4 HOH A 95 395 403 HOH HOH . G 4 HOH A 96 396 404 HOH HOH . G 4 HOH A 97 397 405 HOH HOH . G 4 HOH A 98 398 406 HOH HOH . G 4 HOH A 99 399 407 HOH HOH . G 4 HOH A 100 400 408 HOH HOH . G 4 HOH A 101 401 412 HOH HOH . G 4 HOH A 102 402 413 HOH HOH . G 4 HOH A 103 403 414 HOH HOH . G 4 HOH A 104 404 415 HOH HOH . G 4 HOH A 105 405 416 HOH HOH . G 4 HOH A 106 406 420 HOH HOH . G 4 HOH A 107 407 421 HOH HOH . G 4 HOH A 108 408 422 HOH HOH . G 4 HOH A 109 409 426 HOH HOH . G 4 HOH A 110 410 427 HOH HOH . G 4 HOH A 111 411 431 HOH HOH . G 4 HOH A 112 412 432 HOH HOH . G 4 HOH A 113 413 433 HOH HOH . G 4 HOH A 114 414 435 HOH HOH . G 4 HOH A 115 415 436 HOH HOH . G 4 HOH A 116 416 437 HOH HOH . G 4 HOH A 117 417 438 HOH HOH . G 4 HOH A 118 418 439 HOH HOH . G 4 HOH A 119 419 440 HOH HOH . G 4 HOH A 120 420 441 HOH HOH . G 4 HOH A 121 421 447 HOH HOH . G 4 HOH A 122 422 452 HOH HOH . G 4 HOH A 123 423 460 HOH HOH . G 4 HOH A 124 424 461 HOH HOH . G 4 HOH A 125 425 464 HOH HOH . G 4 HOH A 126 426 466 HOH HOH . G 4 HOH A 127 427 467 HOH HOH . G 4 HOH A 128 428 468 HOH HOH . G 4 HOH A 129 429 471 HOH HOH . G 4 HOH A 130 430 473 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol YB _atom_site.label_atom_id YB _atom_site.label_comp_id YB _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 7.872 _atom_site.Cartn_y 74.034 _atom_site.Cartn_z -3.233 _atom_site.occupancy 0.34 _atom_site.B_iso_or_equiv 57.15 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id YB _atom_site.auth_comp_id YB _atom_site.auth_seq_id 203 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 1 #