data_4NGW
#
_model_server_result.job_id            sYVRo6Q38mHo1HI4mqgidQ 
_model_server_result.datetime_utc      '2024-11-23 11:48:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ngw 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":203}' 
#
_entry.id    4NGW 
#
_exptl.entry_id    4NGW 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              173.04 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'YTTERBIUM (III) ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4NGW 
_cell.length_a            78.665 
_cell.length_b            78.665 
_cell.length_c            37.129 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4NGW 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? 
disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? 
disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
metalc ? metalc1 A OD1 ASN 46 A ASN 46 1_555 B YB YB . A YB 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? 
metalc ? metalc2 A OD2 ASP 87 A ASP 87 1_555 D YB YB . A YB 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? 
metalc ? metalc3 A OXT LEU 129 A LEU 129 1_555 C YB YB . A YB 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? 
metalc ? metalc4 A O LEU 129 A LEU 129 1_555 C YB YB . A YB 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? 
metalc ? metalc5 B YB YB . A YB 201 1_555 G O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? 
metalc ? metalc6 B YB YB . A YB 201 1_555 G O HOH . A HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? 
metalc ? metalc7 B YB YB . A YB 201 1_555 G O HOH . A HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? 
metalc ? metalc8 B YB YB . A YB 201 1_555 G O HOH . A HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? 
metalc ? metalc9 C YB YB . A YB 202 1_555 G O HOH . A HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? 
metalc ? metalc10 D YB YB . A YB 203 1_555 G O HOH . A HOH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? 
metalc ? metalc11 D YB YB . A YB 203 1_555 G O HOH . A HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.365 ? 
metalc ? metalc12 D YB YB . A YB 203 1_555 G O HOH . A HOH 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? 
#
_chem_comp.formula           'Yb 3' 
_chem_comp.formula_weight    173.04 
_chem_comp.id                YB 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'YTTERBIUM (III) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4NGW 
_atom_sites.fract_transf_matrix[1][1]    0.012712 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012712 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.026933 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 YB A 1 201 201 YB YB . 
C 2 YB A 1 202 202 YB YB . 
D 2 YB A 1 203 203 YB YB . 
E 3 CL A 1 204 204 CL CL . 
F 3 CL A 1 205 205 CL CL . 
G 4 HOH A 1 301 301 HOH HOH . 
G 4 HOH A 2 302 302 HOH HOH . 
G 4 HOH A 3 303 303 HOH HOH . 
G 4 HOH A 4 304 304 HOH HOH . 
G 4 HOH A 5 305 305 HOH HOH . 
G 4 HOH A 6 306 307 HOH HOH . 
G 4 HOH A 7 307 308 HOH HOH . 
G 4 HOH A 8 308 309 HOH HOH . 
G 4 HOH A 9 309 311 HOH HOH . 
G 4 HOH A 10 310 312 HOH HOH . 
G 4 HOH A 11 311 313 HOH HOH . 
G 4 HOH A 12 312 314 HOH HOH . 
G 4 HOH A 13 313 315 HOH HOH . 
G 4 HOH A 14 314 316 HOH HOH . 
G 4 HOH A 15 315 317 HOH HOH . 
G 4 HOH A 16 316 318 HOH HOH . 
G 4 HOH A 17 317 319 HOH HOH . 
G 4 HOH A 18 318 320 HOH HOH . 
G 4 HOH A 19 319 321 HOH HOH . 
G 4 HOH A 20 320 322 HOH HOH . 
G 4 HOH A 21 321 323 HOH HOH . 
G 4 HOH A 22 322 324 HOH HOH . 
G 4 HOH A 23 323 325 HOH HOH . 
G 4 HOH A 24 324 326 HOH HOH . 
G 4 HOH A 25 325 327 HOH HOH . 
G 4 HOH A 26 326 328 HOH HOH . 
G 4 HOH A 27 327 329 HOH HOH . 
G 4 HOH A 28 328 330 HOH HOH . 
G 4 HOH A 29 329 331 HOH HOH . 
G 4 HOH A 30 330 332 HOH HOH . 
G 4 HOH A 31 331 333 HOH HOH . 
G 4 HOH A 32 332 334 HOH HOH . 
G 4 HOH A 33 333 335 HOH HOH . 
G 4 HOH A 34 334 336 HOH HOH . 
G 4 HOH A 35 335 337 HOH HOH . 
G 4 HOH A 36 336 338 HOH HOH . 
G 4 HOH A 37 337 339 HOH HOH . 
G 4 HOH A 38 338 340 HOH HOH . 
G 4 HOH A 39 339 341 HOH HOH . 
G 4 HOH A 40 340 342 HOH HOH . 
G 4 HOH A 41 341 343 HOH HOH . 
G 4 HOH A 42 342 344 HOH HOH . 
G 4 HOH A 43 343 345 HOH HOH . 
G 4 HOH A 44 344 346 HOH HOH . 
G 4 HOH A 45 345 347 HOH HOH . 
G 4 HOH A 46 346 348 HOH HOH . 
G 4 HOH A 47 347 349 HOH HOH . 
G 4 HOH A 48 348 350 HOH HOH . 
G 4 HOH A 49 349 351 HOH HOH . 
G 4 HOH A 50 350 352 HOH HOH . 
G 4 HOH A 51 351 353 HOH HOH . 
G 4 HOH A 52 352 354 HOH HOH . 
G 4 HOH A 53 353 355 HOH HOH . 
G 4 HOH A 54 354 356 HOH HOH . 
G 4 HOH A 55 355 357 HOH HOH . 
G 4 HOH A 56 356 358 HOH HOH . 
G 4 HOH A 57 357 359 HOH HOH . 
G 4 HOH A 58 358 360 HOH HOH . 
G 4 HOH A 59 359 361 HOH HOH . 
G 4 HOH A 60 360 362 HOH HOH . 
G 4 HOH A 61 361 363 HOH HOH . 
G 4 HOH A 62 362 364 HOH HOH . 
G 4 HOH A 63 363 365 HOH HOH . 
G 4 HOH A 64 364 366 HOH HOH . 
G 4 HOH A 65 365 367 HOH HOH . 
G 4 HOH A 66 366 368 HOH HOH . 
G 4 HOH A 67 367 369 HOH HOH . 
G 4 HOH A 68 368 370 HOH HOH . 
G 4 HOH A 69 369 371 HOH HOH . 
G 4 HOH A 70 370 372 HOH HOH . 
G 4 HOH A 71 371 373 HOH HOH . 
G 4 HOH A 72 372 374 HOH HOH . 
G 4 HOH A 73 373 376 HOH HOH . 
G 4 HOH A 74 374 377 HOH HOH . 
G 4 HOH A 75 375 378 HOH HOH . 
G 4 HOH A 76 376 379 HOH HOH . 
G 4 HOH A 77 377 380 HOH HOH . 
G 4 HOH A 78 378 382 HOH HOH . 
G 4 HOH A 79 379 383 HOH HOH . 
G 4 HOH A 80 380 384 HOH HOH . 
G 4 HOH A 81 381 385 HOH HOH . 
G 4 HOH A 82 382 386 HOH HOH . 
G 4 HOH A 83 383 388 HOH HOH . 
G 4 HOH A 84 384 389 HOH HOH . 
G 4 HOH A 85 385 390 HOH HOH . 
G 4 HOH A 86 386 391 HOH HOH . 
G 4 HOH A 87 387 393 HOH HOH . 
G 4 HOH A 88 388 394 HOH HOH . 
G 4 HOH A 89 389 395 HOH HOH . 
G 4 HOH A 90 390 396 HOH HOH . 
G 4 HOH A 91 391 397 HOH HOH . 
G 4 HOH A 92 392 398 HOH HOH . 
G 4 HOH A 93 393 399 HOH HOH . 
G 4 HOH A 94 394 402 HOH HOH . 
G 4 HOH A 95 395 403 HOH HOH . 
G 4 HOH A 96 396 404 HOH HOH . 
G 4 HOH A 97 397 405 HOH HOH . 
G 4 HOH A 98 398 406 HOH HOH . 
G 4 HOH A 99 399 407 HOH HOH . 
G 4 HOH A 100 400 408 HOH HOH . 
G 4 HOH A 101 401 412 HOH HOH . 
G 4 HOH A 102 402 413 HOH HOH . 
G 4 HOH A 103 403 414 HOH HOH . 
G 4 HOH A 104 404 415 HOH HOH . 
G 4 HOH A 105 405 416 HOH HOH . 
G 4 HOH A 106 406 420 HOH HOH . 
G 4 HOH A 107 407 421 HOH HOH . 
G 4 HOH A 108 408 422 HOH HOH . 
G 4 HOH A 109 409 426 HOH HOH . 
G 4 HOH A 110 410 427 HOH HOH . 
G 4 HOH A 111 411 431 HOH HOH . 
G 4 HOH A 112 412 432 HOH HOH . 
G 4 HOH A 113 413 433 HOH HOH . 
G 4 HOH A 114 414 435 HOH HOH . 
G 4 HOH A 115 415 436 HOH HOH . 
G 4 HOH A 116 416 437 HOH HOH . 
G 4 HOH A 117 417 438 HOH HOH . 
G 4 HOH A 118 418 439 HOH HOH . 
G 4 HOH A 119 419 440 HOH HOH . 
G 4 HOH A 120 420 441 HOH HOH . 
G 4 HOH A 121 421 447 HOH HOH . 
G 4 HOH A 122 422 452 HOH HOH . 
G 4 HOH A 123 423 460 HOH HOH . 
G 4 HOH A 124 424 461 HOH HOH . 
G 4 HOH A 125 425 464 HOH HOH . 
G 4 HOH A 126 426 466 HOH HOH . 
G 4 HOH A 127 427 467 HOH HOH . 
G 4 HOH A 128 428 468 HOH HOH . 
G 4 HOH A 129 429 471 HOH HOH . 
G 4 HOH A 130 430 473 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           YB 
_atom_site.label_atom_id         YB 
_atom_site.label_comp_id         YB 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               7.872 
_atom_site.Cartn_y               74.034 
_atom_site.Cartn_z               -3.233 
_atom_site.occupancy             0.34 
_atom_site.B_iso_or_equiv        57.15 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          YB 
_atom_site.auth_comp_id          YB 
_atom_site.auth_seq_id           203 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           330 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#