data_4NH0 # _model_server_result.job_id '_G9at7snap-aY36o_U22OQ' _model_server_result.datetime_utc '2024-10-27 14:33:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4nh0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":1404}' # _entry.id 4NH0 # _exptl.entry_id 4NH0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.7 _cell.angle_gamma 90 _cell.entry_id 4NH0 _cell.length_a 251.816 _cell.length_b 116.316 _cell.length_c 174.11 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4NH0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,M 1 1 B,H,I,J,K,L,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 K N N ? 4 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 670 A SER 838 1_555 D MG MG . A MG 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.878 ? metalc ? metalc2 A O GLY 697 A GLY 865 1_555 D MG MG . A MG 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc3 A OG SER 955 A SER 1123 1_555 E MG MG . A MG 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc4 D MG MG . A MG 1402 1_555 G O2G ATP . A ATP 1405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc5 D MG MG . A MG 1402 1_555 G O1B ATP . A ATP 1405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.673 ? metalc ? metalc6 D MG MG . A MG 1402 1_555 M O HOH . A HOH 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.647 ? metalc ? metalc7 D MG MG . A MG 1402 1_555 M O HOH . A HOH 1504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc8 E MG MG . A MG 1403 1_555 F O1B ATP . A ATP 1404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? metalc ? metalc9 E MG MG . A MG 1403 1_555 F O3G ATP . A ATP 1404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc10 E MG MG . A MG 1403 1_555 M O HOH . A HOH 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc11 E MG MG . A MG 1403 1_555 M O HOH . A HOH 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc12 B OG SER 670 B SER 838 1_555 J MG MG . B MG 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc13 B OG SER 955 B SER 1123 1_555 I MG MG . B MG 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.968 ? metalc ? metalc14 I MG MG . B MG 1402 1_555 K O2G ATP . B ATP 1404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? metalc ? metalc15 I MG MG . B MG 1402 1_555 K O1B ATP . B ATP 1404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? metalc ? metalc16 I MG MG . B MG 1402 1_555 N O HOH . B HOH 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.972 ? metalc ? metalc17 I MG MG . B MG 1402 1_555 N O HOH . B HOH 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc18 J MG MG . B MG 1403 1_555 L O2G ATP . B ATP 1405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? metalc ? metalc19 J MG MG . B MG 1403 1_555 L O1B ATP . B ATP 1405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc20 J MG MG . B MG 1403 1_555 N O HOH . B HOH 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc21 J MG MG . B MG 1403 1_555 N O HOH . B HOH 1504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 4NH0 _atom_sites.fract_transf_matrix[1][1] 0.003971 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000895 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008597 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005888 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 1401 1316 SO4 SO4 . D 3 MG A 1 1402 1317 MG MG . E 3 MG A 1 1403 1318 MG MG . F 4 ATP A 1 1404 1319 ATP ATP . G 4 ATP A 1 1405 1320 ATP ATP . H 2 SO4 B 1 1401 1316 SO4 SO4 . I 3 MG B 1 1402 1317 MG MG . J 3 MG B 1 1403 1318 MG MG . K 4 ATP B 1 1404 1319 ATP ATP . L 4 ATP B 1 1405 1320 ATP ATP . M 5 HOH A 1 1501 1324 HOH HOH . M 5 HOH A 2 1502 1325 HOH HOH . M 5 HOH A 3 1503 1326 HOH HOH . M 5 HOH A 4 1504 1327 HOH HOH . N 5 HOH B 1 1501 1324 HOH HOH . N 5 HOH B 2 1502 1326 HOH HOH . N 5 HOH B 3 1503 1327 HOH HOH . N 5 HOH B 4 1504 1328 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . K 4 -28.8 38.724 72.068 1 64.47 ? PG ATP 1404 B 1 HETATM 2 O O1G ATP . . . K 4 -30.282 38.96 72.194 1 53.5 ? O1G ATP 1404 B 1 HETATM 3 O O2G ATP . . . K 4 -27.951 39.84 72.622 1 60.2 ? O2G ATP 1404 B 1 HETATM 4 O O3G ATP . . . K 4 -28.358 37.344 72.483 1 52.24 ? O3G ATP 1404 B 1 HETATM 5 P PB ATP . . . K 4 -28.587 40.109 69.624 1 49.18 ? PB ATP 1404 B 1 HETATM 6 O O1B ATP . . . K 4 -27.64 41.117 70.218 1 97.86 ? O1B ATP 1404 B 1 HETATM 7 O O2B ATP . . . K 4 -30.035 40.471 69.439 1 40.4 ? O2B ATP 1404 B 1 HETATM 8 O O3B ATP . . . K 4 -28.516 38.751 70.483 1 70.48 ? O3B ATP 1404 B 1 HETATM 9 P PA ATP . . . K 4 -26.453 39.906 67.854 1 53.55 ? PA ATP 1404 B 1 HETATM 10 O O1A ATP . . . K 4 -26.319 41.281 67.255 1 63.65 ? O1A ATP 1404 B 1 HETATM 11 O O2A ATP . . . K 4 -25.639 39.554 69.071 1 74.19 ? O2A ATP 1404 B 1 HETATM 12 O O3A ATP . . . K 4 -27.999 39.658 68.203 1 34.96 ? O3A ATP 1404 B 1 HETATM 13 O O5' ATP . . . K 4 -26.165 38.822 66.705 1 55.9 ? O5' ATP 1404 B 1 HETATM 14 C C5' ATP . . . K 4 -26.534 37.456 66.879 1 73.26 ? C5' ATP 1404 B 1 HETATM 15 C C4' ATP . . . K 4 -26.304 36.702 65.575 1 58.24 ? C4' ATP 1404 B 1 HETATM 16 O O4' ATP . . . K 4 -27.069 37.31 64.534 1 54.02 ? O4' ATP 1404 B 1 HETATM 17 C C3' ATP . . . K 4 -24.845 36.739 65.153 1 62.87 ? C3' ATP 1404 B 1 HETATM 18 O O3' ATP . . . K 4 -24.32 35.41 65.117 1 78.43 ? O3' ATP 1404 B 1 HETATM 19 C C2' ATP . . . K 4 -24.823 37.333 63.76 1 66.71 ? C2' ATP 1404 B 1 HETATM 20 O O2' ATP . . . K 4 -24.164 36.44 62.859 1 83.42 ? O2' ATP 1404 B 1 HETATM 21 C C1' ATP . . . K 4 -26.279 37.505 63.361 1 68.03 ? C1' ATP 1404 B 1 HETATM 22 N N9 ATP . . . K 4 -26.506 38.874 62.841 1 58.43 ? N9 ATP 1404 B 1 HETATM 23 C C8 ATP . . . K 4 -26.456 40.002 63.57 1 57.54 ? C8 ATP 1404 B 1 HETATM 24 N N7 ATP . . . K 4 -26.708 41.093 62.806 1 68.99 ? N7 ATP 1404 B 1 HETATM 25 C C5 ATP . . . K 4 -26.928 40.663 61.552 1 67.35 ? C5 ATP 1404 B 1 HETATM 26 C C6 ATP . . . K 4 -27.251 41.293 60.252 1 62.75 ? C6 ATP 1404 B 1 HETATM 27 N N6 ATP . . . K 4 -27.392 42.635 60.139 1 71.99 ? N6 ATP 1404 B 1 HETATM 28 N N1 ATP . . . K 4 -27.399 40.484 59.182 1 67.47 ? N1 ATP 1404 B 1 HETATM 29 C C2 ATP . . . K 4 -27.262 39.15 59.281 1 68.57 ? C2 ATP 1404 B 1 HETATM 30 N N3 ATP . . . K 4 -26.97 38.511 60.427 1 65.86 ? N3 ATP 1404 B 1 HETATM 31 C C4 ATP . . . K 4 -26.792 39.2 61.579 1 69.35 ? C4 ATP 1404 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 40 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #