data_4NH0 # _model_server_result.job_id 9DjQRBUYO0HfjWBgJv4ypA _model_server_result.datetime_utc '2024-10-27 14:26:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4nh0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":1405}' # _entry.id 4NH0 # _exptl.entry_id 4NH0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.7 _cell.angle_gamma 90 _cell.entry_id 4NH0 _cell.length_a 251.816 _cell.length_b 116.316 _cell.length_c 174.11 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4NH0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,M 1 1 B,H,I,J,K,L,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 K N N ? 4 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 670 A SER 838 1_555 D MG MG . A MG 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.878 ? metalc ? metalc2 A O GLY 697 A GLY 865 1_555 D MG MG . A MG 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc3 A OG SER 955 A SER 1123 1_555 E MG MG . A MG 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc4 D MG MG . A MG 1402 1_555 G O2G ATP . A ATP 1405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc5 D MG MG . A MG 1402 1_555 G O1B ATP . A ATP 1405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.673 ? metalc ? metalc6 D MG MG . A MG 1402 1_555 M O HOH . A HOH 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.647 ? metalc ? metalc7 D MG MG . A MG 1402 1_555 M O HOH . A HOH 1504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc8 E MG MG . A MG 1403 1_555 F O1B ATP . A ATP 1404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? metalc ? metalc9 E MG MG . A MG 1403 1_555 F O3G ATP . A ATP 1404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc10 E MG MG . A MG 1403 1_555 M O HOH . A HOH 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc11 E MG MG . A MG 1403 1_555 M O HOH . A HOH 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc12 B OG SER 670 B SER 838 1_555 J MG MG . B MG 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc13 B OG SER 955 B SER 1123 1_555 I MG MG . B MG 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.968 ? metalc ? metalc14 I MG MG . B MG 1402 1_555 K O2G ATP . B ATP 1404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? metalc ? metalc15 I MG MG . B MG 1402 1_555 K O1B ATP . B ATP 1404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? metalc ? metalc16 I MG MG . B MG 1402 1_555 N O HOH . B HOH 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.972 ? metalc ? metalc17 I MG MG . B MG 1402 1_555 N O HOH . B HOH 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc18 J MG MG . B MG 1403 1_555 L O2G ATP . B ATP 1405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? metalc ? metalc19 J MG MG . B MG 1403 1_555 L O1B ATP . B ATP 1405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc20 J MG MG . B MG 1403 1_555 N O HOH . B HOH 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc21 J MG MG . B MG 1403 1_555 N O HOH . B HOH 1504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 4NH0 _atom_sites.fract_transf_matrix[1][1] 0.003971 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000895 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008597 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005888 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 1401 1316 SO4 SO4 . D 3 MG A 1 1402 1317 MG MG . E 3 MG A 1 1403 1318 MG MG . F 4 ATP A 1 1404 1319 ATP ATP . G 4 ATP A 1 1405 1320 ATP ATP . H 2 SO4 B 1 1401 1316 SO4 SO4 . I 3 MG B 1 1402 1317 MG MG . J 3 MG B 1 1403 1318 MG MG . K 4 ATP B 1 1404 1319 ATP ATP . L 4 ATP B 1 1405 1320 ATP ATP . M 5 HOH A 1 1501 1324 HOH HOH . M 5 HOH A 2 1502 1325 HOH HOH . M 5 HOH A 3 1503 1326 HOH HOH . M 5 HOH A 4 1504 1327 HOH HOH . N 5 HOH B 1 1501 1324 HOH HOH . N 5 HOH B 2 1502 1326 HOH HOH . N 5 HOH B 3 1503 1327 HOH HOH . N 5 HOH B 4 1504 1328 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . L 4 -56.593 24.362 38.304 1 105.57 ? PG ATP 1405 B 1 HETATM 2 O O1G ATP . . . L 4 -58.069 24.307 38.609 1 69.99 ? O1G ATP 1405 B 1 HETATM 3 O O2G ATP . . . L 4 -56.06 25.762 38.127 1 100.52 ? O2G ATP 1405 B 1 HETATM 4 O O3G ATP . . . L 4 -55.738 23.476 39.177 1 108.58 ? O3G ATP 1405 B 1 HETATM 5 P PB ATP . . . L 4 -56.445 24.609 35.516 1 103.66 ? PB ATP 1405 B 1 HETATM 6 O O1B ATP . . . L 4 -55.188 25.44 35.511 1 106.14 ? O1B ATP 1405 B 1 HETATM 7 O O2B ATP . . . L 4 -57.789 25.285 35.392 1 97.49 ? O2B ATP 1405 B 1 HETATM 8 O O3B ATP . . . L 4 -56.459 23.699 36.843 1 118.1 ? O3B ATP 1405 B 1 HETATM 9 P PA ATP . . . L 4 -54.878 22.974 33.902 1 98.45 ? PA ATP 1405 B 1 HETATM 10 O O1A ATP . . . L 4 -54.413 23.771 32.71 1 94.28 ? O1A ATP 1405 B 1 HETATM 11 O O2A ATP . . . L 4 -54.007 22.926 35.132 1 121.17 ? O2A ATP 1405 B 1 HETATM 12 O O3A ATP . . . L 4 -56.326 23.519 34.34 1 79.7 ? O3A ATP 1405 B 1 HETATM 13 O O5' ATP . . . L 4 -55.174 21.471 33.411 1 118.1 ? O5' ATP 1405 B 1 HETATM 14 C C5' ATP . . . L 4 -55.823 20.522 34.255 1 120.17 ? C5' ATP 1405 B 1 HETATM 15 C C4' ATP . . . L 4 -55.746 19.159 33.579 1 123.23 ? C4' ATP 1405 B 1 HETATM 16 O O4' ATP . . . L 4 -56.404 19.22 32.313 1 113.92 ? O4' ATP 1405 B 1 HETATM 17 C C3' ATP . . . L 4 -54.301 18.762 33.327 1 132.98 ? C3' ATP 1405 B 1 HETATM 18 O O3' ATP . . . L 4 -54.011 17.531 33.995 1 132.59 ? O3' ATP 1405 B 1 HETATM 19 C C2' ATP . . . L 4 -54.167 18.582 31.829 1 117.57 ? C2' ATP 1405 B 1 HETATM 20 O O2' ATP . . . L 4 -53.623 17.293 31.532 1 117.87 ? O2' ATP 1405 B 1 HETATM 21 C C1' ATP . . . L 4 -55.574 18.705 31.27 1 127.61 ? C1' ATP 1405 B 1 HETATM 22 N N9 ATP . . . L 4 -55.584 19.652 30.129 1 135.44 ? N9 ATP 1405 B 1 HETATM 23 C C8 ATP . . . L 4 -55.764 20.983 30.221 1 130.41 ? C8 ATP 1405 B 1 HETATM 24 N N7 ATP . . . L 4 -55.723 21.57 28.998 1 127.46 ? N7 ATP 1405 B 1 HETATM 25 C C5 ATP . . . L 4 -55.513 20.598 28.092 1 123.06 ? C5 ATP 1405 B 1 HETATM 26 C C6 ATP . . . L 4 -55.364 20.528 26.62 1 105.7 ? C6 ATP 1405 B 1 HETATM 27 N N6 ATP . . . L 4 -55.434 21.643 25.856 1 101.84 ? N6 ATP 1405 B 1 HETATM 28 N N1 ATP . . . L 4 -55.159 19.313 26.068 1 106.3 ? N1 ATP 1405 B 1 HETATM 29 C C2 ATP . . . L 4 -55.086 18.198 26.816 1 127.17 ? C2 ATP 1405 B 1 HETATM 30 N N3 ATP . . . L 4 -55.212 18.188 28.155 1 141.85 ? N3 ATP 1405 B 1 HETATM 31 C C4 ATP . . . L 4 -55.423 19.336 28.842 1 135.91 ? C4 ATP 1405 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #