data_4NH2
#
_model_server_result.job_id            mWNYwCPasFfdQQDGo4mMoA 
_model_server_result.datetime_utc      '2024-11-06 20:42:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4nh2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":501}' 
#
_entry.id    4NH2 
#
_exptl.entry_id    4NH2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              746.991 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S)-3-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-2-[(6E)-HEXADEC-6-ENOYLOXY]PROPYL (8E)-OCTADEC-8-ENOATE' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4NH2 
_cell.length_a            116.19 
_cell.length_b            201.19 
_cell.length_c            232.45 
_cell.Z_PDB               48 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4NH2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA trimeric 3 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,F,G,K,M,N,O,R,T 1 1 
B,C,E,H,I,J,L,P,Q,S 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
#
_chem_comp.formula           'C40 H75 O10 P' 
_chem_comp.formula_weight    746.991 
_chem_comp.id                P6L 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S)-3-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-2-[(6E)-HEXADEC-6-ENOYLOXY]PROPYL (8E)-OCTADEC-8-ENOATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 P6L sing 237 n n 
C1 O12 P6L sing 238 n n 
C1 H11 P6L sing 239 n n 
C1 H12 P6L sing 240 n n 
C2 O3 P6L sing 241 n n 
C2 C50 P6L sing 242 n n 
C2 H2 P6L sing 243 n n 
O3 HO3 P6L sing 244 n n 
O4 C5 P6L sing 245 n n 
O4 C14 P6L sing 246 n n 
C5 C6 P6L sing 247 n n 
C5 C7 P6L sing 248 n n 
C5 H5 P6L sing 249 n n 
C6 O8 P6L sing 250 n n 
C6 H61 P6L sing 251 n n 
C6 H62 P6L sing 252 n n 
C7 O9 P6L sing 253 n n 
C7 H71 P6L sing 254 n n 
C7 H72 P6L sing 255 n n 
O8 C16 P6L sing 256 n n 
O9 P11 P6L sing 257 n n 
O10 P11 P6L doub 258 n n 
P11 O12 P6L sing 259 n n 
P11 O13 P6L sing 260 n n 
O13 H13 P6L sing 261 n n 
C14 O15 P6L doub 262 n n 
C14 C18 P6L sing 263 n n 
C16 O17 P6L doub 264 n n 
C16 C27 P6L sing 265 n n 
C18 C19 P6L sing 266 n n 
C18 H181 P6L sing 267 n n 
C18 H182 P6L sing 268 n n 
C19 C20 P6L sing 269 n n 
C19 H191 P6L sing 270 n n 
C19 H192 P6L sing 271 n n 
C20 C21 P6L sing 272 n n 
C20 H201 P6L sing 273 n n 
C20 H202 P6L sing 274 n n 
C21 C22 P6L sing 275 n n 
C21 H211 P6L sing 276 n n 
C21 H212 P6L sing 277 n n 
C22 C23 P6L doub 278 z n 
C22 H22 P6L sing 279 n n 
C23 C24 P6L sing 280 n n 
C23 H23 P6L sing 281 n n 
C24 C25 P6L sing 282 n n 
C24 H241 P6L sing 283 n n 
C24 H242 P6L sing 284 n n 
C25 C26 P6L sing 285 n n 
C25 H251 P6L sing 286 n n 
C25 H252 P6L sing 287 n n 
C26 C37 P6L sing 288 n n 
C26 H261 P6L sing 289 n n 
C26 H262 P6L sing 290 n n 
C27 C28 P6L sing 291 n n 
C27 H271 P6L sing 292 n n 
C27 H272 P6L sing 293 n n 
C28 C29 P6L sing 294 n n 
C28 H281 P6L sing 295 n n 
C28 H282 P6L sing 296 n n 
C29 C30 P6L sing 297 n n 
C29 H291 P6L sing 298 n n 
C29 H292 P6L sing 299 n n 
C30 C31 P6L sing 300 n n 
C30 H301 P6L sing 301 n n 
C30 H302 P6L sing 302 n n 
C31 C32 P6L sing 303 n n 
C31 H311 P6L sing 304 n n 
C31 H312 P6L sing 305 n n 
C32 C33 P6L sing 306 n n 
C32 H321 P6L sing 307 n n 
C32 H322 P6L sing 308 n n 
C33 C34 P6L doub 309 e n 
C33 H33 P6L sing 310 n n 
C34 C35 P6L sing 311 n n 
C34 H34 P6L sing 312 n n 
C35 C36 P6L sing 313 n n 
C35 H351 P6L sing 314 n n 
C35 H352 P6L sing 315 n n 
C36 C38 P6L sing 316 n n 
C36 H361 P6L sing 317 n n 
C36 H362 P6L sing 318 n n 
C37 C45 P6L sing 319 n n 
C37 H371 P6L sing 320 n n 
C37 H372 P6L sing 321 n n 
C38 C39 P6L sing 322 n n 
C38 H381 P6L sing 323 n n 
C38 H382 P6L sing 324 n n 
C39 C40 P6L sing 325 n n 
C39 H391 P6L sing 326 n n 
C39 H392 P6L sing 327 n n 
C40 C41 P6L sing 328 n n 
C40 H401 P6L sing 329 n n 
C40 H402 P6L sing 330 n n 
C41 C42 P6L sing 331 n n 
C41 H411 P6L sing 332 n n 
C41 H412 P6L sing 333 n n 
C42 C43 P6L sing 334 n n 
C42 H421 P6L sing 335 n n 
C42 H422 P6L sing 336 n n 
C43 C44 P6L sing 337 n n 
C43 H431 P6L sing 338 n n 
C43 H432 P6L sing 339 n n 
C44 H441 P6L sing 340 n n 
C44 H442 P6L sing 341 n n 
C44 H443 P6L sing 342 n n 
C45 C46 P6L sing 343 n n 
C45 H451 P6L sing 344 n n 
C45 H452 P6L sing 345 n n 
C46 C47 P6L sing 346 n n 
C46 H461 P6L sing 347 n n 
C46 H462 P6L sing 348 n n 
C47 C48 P6L sing 349 n n 
C47 H471 P6L sing 350 n n 
C47 H472 P6L sing 351 n n 
C48 C49 P6L sing 352 n n 
C48 H481 P6L sing 353 n n 
C48 H482 P6L sing 354 n n 
C49 H491 P6L sing 355 n n 
C49 H492 P6L sing 356 n n 
C49 H493 P6L sing 357 n n 
C50 O51 P6L sing 358 n n 
C50 H501 P6L sing 359 n n 
C50 H502 P6L sing 360 n n 
O51 H51 P6L sing 361 n n 
#
_atom_sites.entry_id                     4NH2 
_atom_sites.fract_transf_matrix[1][1]    0.008607 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00497 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004302 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 P6L A 1 501 1 P6L P6L . 
H 2 P6L B 1 501 6 P6L P6L . 
I 2 P6L C 1 501 2 P6L P6L . 
J 2 P6L C 1 502 8 P6L P6L . 
K 2 P6L D 1 501 7 P6L P6L . 
L 2 P6L E 1 501 3 P6L P6L . 
M 2 P6L F 1 501 4 P6L P6L . 
N 2 P6L F 1 502 5 P6L P6L . 
O 3 HOH A 1 601 6 HOH HOH . 
O 3 HOH A 2 602 8 HOH HOH . 
O 3 HOH A 3 603 18 HOH HOH . 
O 3 HOH A 4 604 20 HOH HOH . 
O 3 HOH A 5 605 21 HOH HOH . 
O 3 HOH A 6 606 26 HOH HOH . 
O 3 HOH A 7 607 36 HOH HOH . 
O 3 HOH A 8 608 37 HOH HOH . 
O 3 HOH A 9 609 54 HOH HOH . 
O 3 HOH A 10 610 58 HOH HOH . 
O 3 HOH A 11 611 64 HOH HOH . 
O 3 HOH A 12 612 77 HOH HOH . 
O 3 HOH A 13 613 79 HOH HOH . 
O 3 HOH A 14 614 89 HOH HOH . 
O 3 HOH A 15 615 95 HOH HOH . 
O 3 HOH A 16 616 96 HOH HOH . 
O 3 HOH A 17 617 100 HOH HOH . 
O 3 HOH A 18 618 110 HOH HOH . 
O 3 HOH A 19 619 111 HOH HOH . 
P 3 HOH B 1 601 1 HOH HOH . 
P 3 HOH B 2 602 13 HOH HOH . 
P 3 HOH B 3 603 19 HOH HOH . 
P 3 HOH B 4 604 25 HOH HOH . 
P 3 HOH B 5 605 28 HOH HOH . 
P 3 HOH B 6 606 33 HOH HOH . 
P 3 HOH B 7 607 43 HOH HOH . 
P 3 HOH B 8 608 49 HOH HOH . 
P 3 HOH B 9 609 59 HOH HOH . 
P 3 HOH B 10 610 60 HOH HOH . 
P 3 HOH B 11 611 67 HOH HOH . 
P 3 HOH B 12 612 68 HOH HOH . 
P 3 HOH B 13 613 74 HOH HOH . 
P 3 HOH B 14 614 80 HOH HOH . 
P 3 HOH B 15 615 81 HOH HOH . 
P 3 HOH B 16 616 87 HOH HOH . 
P 3 HOH B 17 617 103 HOH HOH . 
P 3 HOH B 18 618 109 HOH HOH . 
P 3 HOH B 19 619 130 HOH HOH . 
Q 3 HOH C 1 601 2 HOH HOH . 
Q 3 HOH C 2 602 12 HOH HOH . 
Q 3 HOH C 3 603 17 HOH HOH . 
Q 3 HOH C 4 604 24 HOH HOH . 
Q 3 HOH C 5 605 27 HOH HOH . 
Q 3 HOH C 6 606 31 HOH HOH . 
Q 3 HOH C 7 607 38 HOH HOH . 
Q 3 HOH C 8 608 44 HOH HOH . 
Q 3 HOH C 9 609 48 HOH HOH . 
Q 3 HOH C 10 610 55 HOH HOH . 
Q 3 HOH C 11 611 63 HOH HOH . 
Q 3 HOH C 12 612 66 HOH HOH . 
Q 3 HOH C 13 613 72 HOH HOH . 
Q 3 HOH C 14 614 84 HOH HOH . 
Q 3 HOH C 15 615 91 HOH HOH . 
Q 3 HOH C 16 616 92 HOH HOH . 
Q 3 HOH C 17 617 94 HOH HOH . 
R 3 HOH D 1 601 102 HOH HOH . 
R 3 HOH D 2 602 112 HOH HOH . 
R 3 HOH D 3 603 113 HOH HOH . 
R 3 HOH D 4 604 114 HOH HOH . 
R 3 HOH D 5 605 115 HOH HOH . 
R 3 HOH D 6 606 116 HOH HOH . 
R 3 HOH D 7 607 117 HOH HOH . 
R 3 HOH D 8 608 118 HOH HOH . 
R 3 HOH D 9 609 119 HOH HOH . 
R 3 HOH D 10 610 120 HOH HOH . 
R 3 HOH D 11 611 121 HOH HOH . 
R 3 HOH D 12 612 123 HOH HOH . 
R 3 HOH D 13 613 124 HOH HOH . 
R 3 HOH D 14 614 125 HOH HOH . 
R 3 HOH D 15 615 126 HOH HOH . 
R 3 HOH D 16 616 128 HOH HOH . 
R 3 HOH D 17 617 129 HOH HOH . 
S 3 HOH E 1 601 10 HOH HOH . 
S 3 HOH E 2 602 11 HOH HOH . 
S 3 HOH E 3 603 16 HOH HOH . 
S 3 HOH E 4 604 22 HOH HOH . 
S 3 HOH E 5 605 30 HOH HOH . 
S 3 HOH E 6 606 34 HOH HOH . 
S 3 HOH E 7 607 35 HOH HOH . 
S 3 HOH E 8 608 46 HOH HOH . 
S 3 HOH E 9 609 52 HOH HOH . 
S 3 HOH E 10 610 53 HOH HOH . 
S 3 HOH E 11 611 56 HOH HOH . 
S 3 HOH E 12 612 70 HOH HOH . 
S 3 HOH E 13 613 82 HOH HOH . 
S 3 HOH E 14 614 85 HOH HOH . 
S 3 HOH E 15 615 93 HOH HOH . 
S 3 HOH E 16 616 97 HOH HOH . 
S 3 HOH E 17 617 98 HOH HOH . 
S 3 HOH E 18 618 131 HOH HOH . 
S 3 HOH E 19 619 132 HOH HOH . 
T 3 HOH F 1 601 3 HOH HOH . 
T 3 HOH F 2 602 4 HOH HOH . 
T 3 HOH F 3 603 9 HOH HOH . 
T 3 HOH F 4 604 23 HOH HOH . 
T 3 HOH F 5 605 29 HOH HOH . 
T 3 HOH F 6 606 39 HOH HOH . 
T 3 HOH F 7 607 40 HOH HOH . 
T 3 HOH F 8 608 42 HOH HOH . 
T 3 HOH F 9 609 51 HOH HOH . 
T 3 HOH F 10 610 61 HOH HOH . 
T 3 HOH F 11 611 69 HOH HOH . 
T 3 HOH F 12 612 71 HOH HOH . 
T 3 HOH F 13 613 76 HOH HOH . 
T 3 HOH F 14 614 88 HOH HOH . 
T 3 HOH F 15 615 90 HOH HOH . 
T 3 HOH F 16 616 99 HOH HOH . 
T 3 HOH F 17 617 105 HOH HOH . 
T 3 HOH F 18 618 106 HOH HOH . 
T 3 HOH F 19 619 107 HOH HOH . 
T 3 HOH F 20 620 127 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 P6L . . . L 2 -36.014 -13.08 47.962 1 72.22 ? C1 P6L 501 E 1 
HETATM 2 C C2 P6L . . . L 2 -36.334 -12.465 49.337 1 76.48 ? C2 P6L 501 E 1 
HETATM 3 O O3 P6L . . . L 2 -36.604 -13.521 50.273 1 81.89 ? O3 P6L 501 E 1 
HETATM 4 O O4 P6L . . . L 2 -35.305 -12.645 41.268 1 65.74 ? O4 P6L 501 E 1 
HETATM 5 C C5 P6L . . . L 2 -36.562 -12.834 41.942 1 60.28 ? C5 P6L 501 E 1 
HETATM 6 C C6 P6L . . . L 2 -37.469 -13.661 41.07 1 54.76 ? C6 P6L 501 E 1 
HETATM 7 C C7 P6L . . . L 2 -36.349 -13.587 43.261 1 66.25 ? C7 P6L 501 E 1 
HETATM 8 O O8 P6L . . . L 2 -38.592 -14.04 41.825 1 55.11 ? O8 P6L 501 E 1 
HETATM 9 O O9 P6L . . . L 2 -37.191 -13.25 44.382 1 67.48 ? O9 P6L 501 E 1 
HETATM 10 O O10 P6L . . . L 2 -35.628 -14.688 45.747 1 74.05 ? O10 P6L 501 E 1 
HETATM 11 P P11 P6L . . . L 2 -37.061 -14.165 45.742 1 79.11 ? P11 P6L 501 E 1 
HETATM 12 O O12 P6L . . . L 2 -37.147 -13.253 47.097 1 71.49 ? O12 P6L 501 E 1 
HETATM 13 O O13 P6L . . . L 2 -38.273 -15.093 45.702 1 57.56 ? O13 P6L 501 E 1 
HETATM 14 C C14 P6L . . . L 2 -35.404 -12.341 39.826 1 70.51 ? C14 P6L 501 E 1 
HETATM 15 O O15 P6L . . . L 2 -36.339 -11.649 39.482 1 73.37 ? O15 P6L 501 E 1 
HETATM 16 C C16 P6L . . . L 2 -39.866 -14.161 41.119 1 59.93 ? C16 P6L 501 E 1 
HETATM 17 O O17 P6L . . . L 2 -40.743 -13.308 41.324 1 43.93 ? O17 P6L 501 E 1 
HETATM 18 C C18 P6L . . . L 2 -34.419 -12.829 38.756 1 67.92 ? C18 P6L 501 E 1 
HETATM 19 C C19 P6L . . . L 2 -35.083 -13.624 37.607 1 73.43 ? C19 P6L 501 E 1 
HETATM 20 C C20 P6L . . . L 2 -35.929 -12.838 36.56 1 72.31 ? C20 P6L 501 E 1 
HETATM 21 C C21 P6L . . . L 2 -37.452 -12.886 36.842 1 72.77 ? C21 P6L 501 E 1 
HETATM 22 C C22 P6L . . . L 2 -38.397 -13.088 35.655 1 78.04 ? C22 P6L 501 E 1 
HETATM 23 C C23 P6L . . . L 2 -39.725 -12.87 35.814 1 80.23 ? C23 P6L 501 E 1 
HETATM 24 C C24 P6L . . . L 2 -40.79 -13.025 34.719 1 80.2 ? C24 P6L 501 E 1 
HETATM 25 C C25 P6L . . . L 2 -41.984 -13.937 35.122 1 81.39 ? C25 P6L 501 E 1 
HETATM 26 C C26 P6L . . . L 2 -43.358 -13.708 34.446 1 68.97 ? C26 P6L 501 E 1 
HETATM 27 C C27 P6L . . . L 2 -40.081 -15.317 40.147 1 58.23 ? C27 P6L 501 E 1 
HETATM 28 C C28 P6L . . . L 2 -39.573 -14.88 38.771 1 59.34 ? C28 P6L 501 E 1 
HETATM 29 C C29 P6L . . . L 2 -40.345 -15.5 37.595 1 60.3 ? C29 P6L 501 E 1 
HETATM 30 C C30 P6L . . . L 2 -39.895 -16.89 37.127 1 55 ? C30 P6L 501 E 1 
HETATM 31 C C37 P6L . . . L 2 -44.364 -14.785 34.892 1 69.73 ? C37 P6L 501 E 1 
HETATM 32 C C45 P6L . . . L 2 -45.856 -14.463 34.644 1 67.25 ? C45 P6L 501 E 1 
HETATM 33 C C46 P6L . . . L 2 -46.836 -15.588 35.06 1 57.06 ? C46 P6L 501 E 1 
HETATM 34 C C50 P6L . . . L 2 -37.509 -11.475 49.328 1 73.59 ? C50 P6L 501 E 1 
HETATM 35 O O51 P6L . . . L 2 -37.555 -10.767 50.583 1 69.1 ? O51 P6L 501 E 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           35 
#