data_4NH2 # _model_server_result.job_id YP1ZGI4DusuGvWn4jQsJ2A _model_server_result.datetime_utc '2024-12-09 06:38:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4nh2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":501}' # _entry.id 4NH2 # _exptl.entry_id 4NH2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 746.991 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-3-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-2-[(6E)-HEXADEC-6-ENOYLOXY]PROPYL (8E)-OCTADEC-8-ENOATE' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4NH2 _cell.length_a 116.19 _cell.length_b 201.19 _cell.length_c 232.45 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4NH2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,F,G,K,M,N,O,R,T 1 1 B,C,E,H,I,J,L,P,Q,S 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N # _chem_comp.formula 'C40 H75 O10 P' _chem_comp.formula_weight 746.991 _chem_comp.id P6L _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-3-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-2-[(6E)-HEXADEC-6-ENOYLOXY]PROPYL (8E)-OCTADEC-8-ENOATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 P6L sing 237 n n C1 O12 P6L sing 238 n n C1 H11 P6L sing 239 n n C1 H12 P6L sing 240 n n C2 O3 P6L sing 241 n n C2 C50 P6L sing 242 n n C2 H2 P6L sing 243 n n O3 HO3 P6L sing 244 n n O4 C5 P6L sing 245 n n O4 C14 P6L sing 246 n n C5 C6 P6L sing 247 n n C5 C7 P6L sing 248 n n C5 H5 P6L sing 249 n n C6 O8 P6L sing 250 n n C6 H61 P6L sing 251 n n C6 H62 P6L sing 252 n n C7 O9 P6L sing 253 n n C7 H71 P6L sing 254 n n C7 H72 P6L sing 255 n n O8 C16 P6L sing 256 n n O9 P11 P6L sing 257 n n O10 P11 P6L doub 258 n n P11 O12 P6L sing 259 n n P11 O13 P6L sing 260 n n O13 H13 P6L sing 261 n n C14 O15 P6L doub 262 n n C14 C18 P6L sing 263 n n C16 O17 P6L doub 264 n n C16 C27 P6L sing 265 n n C18 C19 P6L sing 266 n n C18 H181 P6L sing 267 n n C18 H182 P6L sing 268 n n C19 C20 P6L sing 269 n n C19 H191 P6L sing 270 n n C19 H192 P6L sing 271 n n C20 C21 P6L sing 272 n n C20 H201 P6L sing 273 n n C20 H202 P6L sing 274 n n C21 C22 P6L sing 275 n n C21 H211 P6L sing 276 n n C21 H212 P6L sing 277 n n C22 C23 P6L doub 278 z n C22 H22 P6L sing 279 n n C23 C24 P6L sing 280 n n C23 H23 P6L sing 281 n n C24 C25 P6L sing 282 n n C24 H241 P6L sing 283 n n C24 H242 P6L sing 284 n n C25 C26 P6L sing 285 n n C25 H251 P6L sing 286 n n C25 H252 P6L sing 287 n n C26 C37 P6L sing 288 n n C26 H261 P6L sing 289 n n C26 H262 P6L sing 290 n n C27 C28 P6L sing 291 n n C27 H271 P6L sing 292 n n C27 H272 P6L sing 293 n n C28 C29 P6L sing 294 n n C28 H281 P6L sing 295 n n C28 H282 P6L sing 296 n n C29 C30 P6L sing 297 n n C29 H291 P6L sing 298 n n C29 H292 P6L sing 299 n n C30 C31 P6L sing 300 n n C30 H301 P6L sing 301 n n C30 H302 P6L sing 302 n n C31 C32 P6L sing 303 n n C31 H311 P6L sing 304 n n C31 H312 P6L sing 305 n n C32 C33 P6L sing 306 n n C32 H321 P6L sing 307 n n C32 H322 P6L sing 308 n n C33 C34 P6L doub 309 e n C33 H33 P6L sing 310 n n C34 C35 P6L sing 311 n n C34 H34 P6L sing 312 n n C35 C36 P6L sing 313 n n C35 H351 P6L sing 314 n n C35 H352 P6L sing 315 n n C36 C38 P6L sing 316 n n C36 H361 P6L sing 317 n n C36 H362 P6L sing 318 n n C37 C45 P6L sing 319 n n C37 H371 P6L sing 320 n n C37 H372 P6L sing 321 n n C38 C39 P6L sing 322 n n C38 H381 P6L sing 323 n n C38 H382 P6L sing 324 n n C39 C40 P6L sing 325 n n C39 H391 P6L sing 326 n n C39 H392 P6L sing 327 n n C40 C41 P6L sing 328 n n C40 H401 P6L sing 329 n n C40 H402 P6L sing 330 n n C41 C42 P6L sing 331 n n C41 H411 P6L sing 332 n n C41 H412 P6L sing 333 n n C42 C43 P6L sing 334 n n C42 H421 P6L sing 335 n n C42 H422 P6L sing 336 n n C43 C44 P6L sing 337 n n C43 H431 P6L sing 338 n n C43 H432 P6L sing 339 n n C44 H441 P6L sing 340 n n C44 H442 P6L sing 341 n n C44 H443 P6L sing 342 n n C45 C46 P6L sing 343 n n C45 H451 P6L sing 344 n n C45 H452 P6L sing 345 n n C46 C47 P6L sing 346 n n C46 H461 P6L sing 347 n n C46 H462 P6L sing 348 n n C47 C48 P6L sing 349 n n C47 H471 P6L sing 350 n n C47 H472 P6L sing 351 n n C48 C49 P6L sing 352 n n C48 H481 P6L sing 353 n n C48 H482 P6L sing 354 n n C49 H491 P6L sing 355 n n C49 H492 P6L sing 356 n n C49 H493 P6L sing 357 n n C50 O51 P6L sing 358 n n C50 H501 P6L sing 359 n n C50 H502 P6L sing 360 n n O51 H51 P6L sing 361 n n # _atom_sites.entry_id 4NH2 _atom_sites.fract_transf_matrix[1][1] 0.008607 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00497 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004302 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 P6L A 1 501 1 P6L P6L . H 2 P6L B 1 501 6 P6L P6L . I 2 P6L C 1 501 2 P6L P6L . J 2 P6L C 1 502 8 P6L P6L . K 2 P6L D 1 501 7 P6L P6L . L 2 P6L E 1 501 3 P6L P6L . M 2 P6L F 1 501 4 P6L P6L . N 2 P6L F 1 502 5 P6L P6L . O 3 HOH A 1 601 6 HOH HOH . O 3 HOH A 2 602 8 HOH HOH . O 3 HOH A 3 603 18 HOH HOH . O 3 HOH A 4 604 20 HOH HOH . O 3 HOH A 5 605 21 HOH HOH . O 3 HOH A 6 606 26 HOH HOH . O 3 HOH A 7 607 36 HOH HOH . O 3 HOH A 8 608 37 HOH HOH . O 3 HOH A 9 609 54 HOH HOH . O 3 HOH A 10 610 58 HOH HOH . O 3 HOH A 11 611 64 HOH HOH . O 3 HOH A 12 612 77 HOH HOH . O 3 HOH A 13 613 79 HOH HOH . O 3 HOH A 14 614 89 HOH HOH . O 3 HOH A 15 615 95 HOH HOH . O 3 HOH A 16 616 96 HOH HOH . O 3 HOH A 17 617 100 HOH HOH . O 3 HOH A 18 618 110 HOH HOH . O 3 HOH A 19 619 111 HOH HOH . P 3 HOH B 1 601 1 HOH HOH . P 3 HOH B 2 602 13 HOH HOH . P 3 HOH B 3 603 19 HOH HOH . P 3 HOH B 4 604 25 HOH HOH . P 3 HOH B 5 605 28 HOH HOH . P 3 HOH B 6 606 33 HOH HOH . P 3 HOH B 7 607 43 HOH HOH . P 3 HOH B 8 608 49 HOH HOH . P 3 HOH B 9 609 59 HOH HOH . P 3 HOH B 10 610 60 HOH HOH . P 3 HOH B 11 611 67 HOH HOH . P 3 HOH B 12 612 68 HOH HOH . P 3 HOH B 13 613 74 HOH HOH . P 3 HOH B 14 614 80 HOH HOH . P 3 HOH B 15 615 81 HOH HOH . P 3 HOH B 16 616 87 HOH HOH . P 3 HOH B 17 617 103 HOH HOH . P 3 HOH B 18 618 109 HOH HOH . P 3 HOH B 19 619 130 HOH HOH . Q 3 HOH C 1 601 2 HOH HOH . Q 3 HOH C 2 602 12 HOH HOH . Q 3 HOH C 3 603 17 HOH HOH . Q 3 HOH C 4 604 24 HOH HOH . Q 3 HOH C 5 605 27 HOH HOH . Q 3 HOH C 6 606 31 HOH HOH . Q 3 HOH C 7 607 38 HOH HOH . Q 3 HOH C 8 608 44 HOH HOH . Q 3 HOH C 9 609 48 HOH HOH . Q 3 HOH C 10 610 55 HOH HOH . Q 3 HOH C 11 611 63 HOH HOH . Q 3 HOH C 12 612 66 HOH HOH . Q 3 HOH C 13 613 72 HOH HOH . Q 3 HOH C 14 614 84 HOH HOH . Q 3 HOH C 15 615 91 HOH HOH . Q 3 HOH C 16 616 92 HOH HOH . Q 3 HOH C 17 617 94 HOH HOH . R 3 HOH D 1 601 102 HOH HOH . R 3 HOH D 2 602 112 HOH HOH . R 3 HOH D 3 603 113 HOH HOH . R 3 HOH D 4 604 114 HOH HOH . R 3 HOH D 5 605 115 HOH HOH . R 3 HOH D 6 606 116 HOH HOH . R 3 HOH D 7 607 117 HOH HOH . R 3 HOH D 8 608 118 HOH HOH . R 3 HOH D 9 609 119 HOH HOH . R 3 HOH D 10 610 120 HOH HOH . R 3 HOH D 11 611 121 HOH HOH . R 3 HOH D 12 612 123 HOH HOH . R 3 HOH D 13 613 124 HOH HOH . R 3 HOH D 14 614 125 HOH HOH . R 3 HOH D 15 615 126 HOH HOH . R 3 HOH D 16 616 128 HOH HOH . R 3 HOH D 17 617 129 HOH HOH . S 3 HOH E 1 601 10 HOH HOH . S 3 HOH E 2 602 11 HOH HOH . S 3 HOH E 3 603 16 HOH HOH . S 3 HOH E 4 604 22 HOH HOH . S 3 HOH E 5 605 30 HOH HOH . S 3 HOH E 6 606 34 HOH HOH . S 3 HOH E 7 607 35 HOH HOH . S 3 HOH E 8 608 46 HOH HOH . S 3 HOH E 9 609 52 HOH HOH . S 3 HOH E 10 610 53 HOH HOH . S 3 HOH E 11 611 56 HOH HOH . S 3 HOH E 12 612 70 HOH HOH . S 3 HOH E 13 613 82 HOH HOH . S 3 HOH E 14 614 85 HOH HOH . S 3 HOH E 15 615 93 HOH HOH . S 3 HOH E 16 616 97 HOH HOH . S 3 HOH E 17 617 98 HOH HOH . S 3 HOH E 18 618 131 HOH HOH . S 3 HOH E 19 619 132 HOH HOH . T 3 HOH F 1 601 3 HOH HOH . T 3 HOH F 2 602 4 HOH HOH . T 3 HOH F 3 603 9 HOH HOH . T 3 HOH F 4 604 23 HOH HOH . T 3 HOH F 5 605 29 HOH HOH . T 3 HOH F 6 606 39 HOH HOH . T 3 HOH F 7 607 40 HOH HOH . T 3 HOH F 8 608 42 HOH HOH . T 3 HOH F 9 609 51 HOH HOH . T 3 HOH F 10 610 61 HOH HOH . T 3 HOH F 11 611 69 HOH HOH . T 3 HOH F 12 612 71 HOH HOH . T 3 HOH F 13 613 76 HOH HOH . T 3 HOH F 14 614 88 HOH HOH . T 3 HOH F 15 615 90 HOH HOH . T 3 HOH F 16 616 99 HOH HOH . T 3 HOH F 17 617 105 HOH HOH . T 3 HOH F 18 618 106 HOH HOH . T 3 HOH F 19 619 107 HOH HOH . T 3 HOH F 20 620 127 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 P6L . . . K 2 -72.861 -84.737 47.845 1 75.21 ? C1 P6L 501 D 1 HETATM 2 C C2 P6L . . . K 2 -72.362 -84.504 49.299 1 74.42 ? C2 P6L 501 D 1 HETATM 3 O O3 P6L . . . K 2 -71.37 -85.491 49.6 1 70.44 ? O3 P6L 501 D 1 HETATM 4 O O4 P6L . . . K 2 -73.796 -82.684 41.528 1 59.85 ? O4 P6L 501 D 1 HETATM 5 C C5 P6L . . . K 2 -74.34 -82.915 42.853 1 55.82 ? C5 P6L 501 D 1 HETATM 6 C C6 P6L . . . K 2 -75.854 -82.916 42.711 1 65.36 ? C6 P6L 501 D 1 HETATM 7 C C7 P6L . . . K 2 -74.039 -84.259 43.505 1 49.69 ? C7 P6L 501 D 1 HETATM 8 O O8 P6L . . . K 2 -76.316 -81.749 42.077 1 65.61 ? O8 P6L 501 D 1 HETATM 9 O O9 P6L . . . K 2 -73.797 -84.198 44.908 1 51.44 ? O9 P6L 501 D 1 HETATM 10 O O10 P6L . . . K 2 -75.444 -85.201 46.455 1 72.69 ? O10 P6L 501 D 1 HETATM 11 P P11 P6L . . . K 2 -74.811 -83.873 46.113 1 61.67 ? P11 P6L 501 D 1 HETATM 12 O O12 P6L . . . K 2 -73.684 -83.667 47.294 1 73.41 ? O12 P6L 501 D 1 HETATM 13 O O13 P6L . . . K 2 -75.66 -82.552 45.918 1 50.09 ? O13 P6L 501 D 1 HETATM 14 C C14 P6L . . . K 2 -72.849 -83.603 40.84 1 48.15 ? C14 P6L 501 D 1 HETATM 15 O O15 P6L . . . K 2 -72.086 -84.319 41.48 1 50.35 ? O15 P6L 501 D 1 HETATM 16 C C16 P6L . . . K 2 -75.995 -81.549 40.701 1 65.21 ? C16 P6L 501 D 1 HETATM 17 O O17 P6L . . . K 2 -75.475 -80.502 40.405 1 69.65 ? O17 P6L 501 D 1 HETATM 18 C C18 P6L . . . K 2 -72.77 -83.6 39.316 1 40.89 ? C18 P6L 501 D 1 HETATM 19 C C19 P6L . . . K 2 -72.414 -84.94 38.69 1 41.37 ? C19 P6L 501 D 1 HETATM 20 C C20 P6L . . . K 2 -73.254 -85.145 37.42 1 52.35 ? C20 P6L 501 D 1 HETATM 21 C C21 P6L . . . K 2 -72.637 -84.547 36.134 1 61.19 ? C21 P6L 501 D 1 HETATM 22 C C22 P6L . . . K 2 -73.351 -83.416 35.365 1 61.8 ? C22 P6L 501 D 1 HETATM 23 C C23 P6L . . . K 2 -73.73 -82.23 35.873 1 64.26 ? C23 P6L 501 D 1 HETATM 24 C C24 P6L . . . K 2 -74.386 -81.175 34.981 1 59.28 ? C24 P6L 501 D 1 HETATM 25 C C25 P6L . . . K 2 -75.906 -81.069 35.084 1 55.73 ? C25 P6L 501 D 1 HETATM 26 C C26 P6L . . . K 2 -76.387 -79.844 35.877 1 58.83 ? C26 P6L 501 D 1 HETATM 27 C C27 P6L . . . K 2 -76.342 -82.615 39.709 1 65.6 ? C27 P6L 501 D 1 HETATM 28 C C28 P6L . . . K 2 -76.616 -82.011 38.344 1 64.57 ? C28 P6L 501 D 1 HETATM 29 C C29 P6L . . . K 2 -78.122 -81.856 38.212 1 61.08 ? C29 P6L 501 D 1 HETATM 30 C C37 P6L . . . K 2 -77.043 -78.69 35.063 1 56.45 ? C37 P6L 501 D 1 HETATM 31 C C45 P6L . . . K 2 -78.537 -78.529 35.337 1 51.11 ? C45 P6L 501 D 1 HETATM 32 C C46 P6L . . . K 2 -78.913 -77.108 35.766 1 54.44 ? C46 P6L 501 D 1 HETATM 33 C C50 P6L . . . K 2 -73.43 -84.614 50.399 1 66.3 ? C50 P6L 501 D 1 HETATM 34 O O51 P6L . . . K 2 -73.93 -83.308 50.737 1 61.86 ? O51 P6L 501 D 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 34 #