data_4NH2 # _model_server_result.job_id kO3r9nU4IWHmo_ySSFt9FA _model_server_result.datetime_utc '2024-11-06 20:49:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4nh2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":502}' # _entry.id 4NH2 # _exptl.entry_id 4NH2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 746.991 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-3-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-2-[(6E)-HEXADEC-6-ENOYLOXY]PROPYL (8E)-OCTADEC-8-ENOATE' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4NH2 _cell.length_a 116.19 _cell.length_b 201.19 _cell.length_c 232.45 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4NH2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,F,G,K,M,N,O,R,T 1 1 B,C,E,H,I,J,L,P,Q,S 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N # _chem_comp.formula 'C40 H75 O10 P' _chem_comp.formula_weight 746.991 _chem_comp.id P6L _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-3-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-2-[(6E)-HEXADEC-6-ENOYLOXY]PROPYL (8E)-OCTADEC-8-ENOATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 P6L sing 237 n n C1 O12 P6L sing 238 n n C1 H11 P6L sing 239 n n C1 H12 P6L sing 240 n n C2 O3 P6L sing 241 n n C2 C50 P6L sing 242 n n C2 H2 P6L sing 243 n n O3 HO3 P6L sing 244 n n O4 C5 P6L sing 245 n n O4 C14 P6L sing 246 n n C5 C6 P6L sing 247 n n C5 C7 P6L sing 248 n n C5 H5 P6L sing 249 n n C6 O8 P6L sing 250 n n C6 H61 P6L sing 251 n n C6 H62 P6L sing 252 n n C7 O9 P6L sing 253 n n C7 H71 P6L sing 254 n n C7 H72 P6L sing 255 n n O8 C16 P6L sing 256 n n O9 P11 P6L sing 257 n n O10 P11 P6L doub 258 n n P11 O12 P6L sing 259 n n P11 O13 P6L sing 260 n n O13 H13 P6L sing 261 n n C14 O15 P6L doub 262 n n C14 C18 P6L sing 263 n n C16 O17 P6L doub 264 n n C16 C27 P6L sing 265 n n C18 C19 P6L sing 266 n n C18 H181 P6L sing 267 n n C18 H182 P6L sing 268 n n C19 C20 P6L sing 269 n n C19 H191 P6L sing 270 n n C19 H192 P6L sing 271 n n C20 C21 P6L sing 272 n n C20 H201 P6L sing 273 n n C20 H202 P6L sing 274 n n C21 C22 P6L sing 275 n n C21 H211 P6L sing 276 n n C21 H212 P6L sing 277 n n C22 C23 P6L doub 278 z n C22 H22 P6L sing 279 n n C23 C24 P6L sing 280 n n C23 H23 P6L sing 281 n n C24 C25 P6L sing 282 n n C24 H241 P6L sing 283 n n C24 H242 P6L sing 284 n n C25 C26 P6L sing 285 n n C25 H251 P6L sing 286 n n C25 H252 P6L sing 287 n n C26 C37 P6L sing 288 n n C26 H261 P6L sing 289 n n C26 H262 P6L sing 290 n n C27 C28 P6L sing 291 n n C27 H271 P6L sing 292 n n C27 H272 P6L sing 293 n n C28 C29 P6L sing 294 n n C28 H281 P6L sing 295 n n C28 H282 P6L sing 296 n n C29 C30 P6L sing 297 n n C29 H291 P6L sing 298 n n C29 H292 P6L sing 299 n n C30 C31 P6L sing 300 n n C30 H301 P6L sing 301 n n C30 H302 P6L sing 302 n n C31 C32 P6L sing 303 n n C31 H311 P6L sing 304 n n C31 H312 P6L sing 305 n n C32 C33 P6L sing 306 n n C32 H321 P6L sing 307 n n C32 H322 P6L sing 308 n n C33 C34 P6L doub 309 e n C33 H33 P6L sing 310 n n C34 C35 P6L sing 311 n n C34 H34 P6L sing 312 n n C35 C36 P6L sing 313 n n C35 H351 P6L sing 314 n n C35 H352 P6L sing 315 n n C36 C38 P6L sing 316 n n C36 H361 P6L sing 317 n n C36 H362 P6L sing 318 n n C37 C45 P6L sing 319 n n C37 H371 P6L sing 320 n n C37 H372 P6L sing 321 n n C38 C39 P6L sing 322 n n C38 H381 P6L sing 323 n n C38 H382 P6L sing 324 n n C39 C40 P6L sing 325 n n C39 H391 P6L sing 326 n n C39 H392 P6L sing 327 n n C40 C41 P6L sing 328 n n C40 H401 P6L sing 329 n n C40 H402 P6L sing 330 n n C41 C42 P6L sing 331 n n C41 H411 P6L sing 332 n n C41 H412 P6L sing 333 n n C42 C43 P6L sing 334 n n C42 H421 P6L sing 335 n n C42 H422 P6L sing 336 n n C43 C44 P6L sing 337 n n C43 H431 P6L sing 338 n n C43 H432 P6L sing 339 n n C44 H441 P6L sing 340 n n C44 H442 P6L sing 341 n n C44 H443 P6L sing 342 n n C45 C46 P6L sing 343 n n C45 H451 P6L sing 344 n n C45 H452 P6L sing 345 n n C46 C47 P6L sing 346 n n C46 H461 P6L sing 347 n n C46 H462 P6L sing 348 n n C47 C48 P6L sing 349 n n C47 H471 P6L sing 350 n n C47 H472 P6L sing 351 n n C48 C49 P6L sing 352 n n C48 H481 P6L sing 353 n n C48 H482 P6L sing 354 n n C49 H491 P6L sing 355 n n C49 H492 P6L sing 356 n n C49 H493 P6L sing 357 n n C50 O51 P6L sing 358 n n C50 H501 P6L sing 359 n n C50 H502 P6L sing 360 n n O51 H51 P6L sing 361 n n # _atom_sites.entry_id 4NH2 _atom_sites.fract_transf_matrix[1][1] 0.008607 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00497 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004302 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 P6L A 1 501 1 P6L P6L . H 2 P6L B 1 501 6 P6L P6L . I 2 P6L C 1 501 2 P6L P6L . J 2 P6L C 1 502 8 P6L P6L . K 2 P6L D 1 501 7 P6L P6L . L 2 P6L E 1 501 3 P6L P6L . M 2 P6L F 1 501 4 P6L P6L . N 2 P6L F 1 502 5 P6L P6L . O 3 HOH A 1 601 6 HOH HOH . O 3 HOH A 2 602 8 HOH HOH . O 3 HOH A 3 603 18 HOH HOH . O 3 HOH A 4 604 20 HOH HOH . O 3 HOH A 5 605 21 HOH HOH . O 3 HOH A 6 606 26 HOH HOH . O 3 HOH A 7 607 36 HOH HOH . O 3 HOH A 8 608 37 HOH HOH . O 3 HOH A 9 609 54 HOH HOH . O 3 HOH A 10 610 58 HOH HOH . O 3 HOH A 11 611 64 HOH HOH . O 3 HOH A 12 612 77 HOH HOH . O 3 HOH A 13 613 79 HOH HOH . O 3 HOH A 14 614 89 HOH HOH . O 3 HOH A 15 615 95 HOH HOH . O 3 HOH A 16 616 96 HOH HOH . O 3 HOH A 17 617 100 HOH HOH . O 3 HOH A 18 618 110 HOH HOH . O 3 HOH A 19 619 111 HOH HOH . P 3 HOH B 1 601 1 HOH HOH . P 3 HOH B 2 602 13 HOH HOH . P 3 HOH B 3 603 19 HOH HOH . P 3 HOH B 4 604 25 HOH HOH . P 3 HOH B 5 605 28 HOH HOH . P 3 HOH B 6 606 33 HOH HOH . P 3 HOH B 7 607 43 HOH HOH . P 3 HOH B 8 608 49 HOH HOH . P 3 HOH B 9 609 59 HOH HOH . P 3 HOH B 10 610 60 HOH HOH . P 3 HOH B 11 611 67 HOH HOH . P 3 HOH B 12 612 68 HOH HOH . P 3 HOH B 13 613 74 HOH HOH . P 3 HOH B 14 614 80 HOH HOH . P 3 HOH B 15 615 81 HOH HOH . P 3 HOH B 16 616 87 HOH HOH . P 3 HOH B 17 617 103 HOH HOH . P 3 HOH B 18 618 109 HOH HOH . P 3 HOH B 19 619 130 HOH HOH . Q 3 HOH C 1 601 2 HOH HOH . Q 3 HOH C 2 602 12 HOH HOH . Q 3 HOH C 3 603 17 HOH HOH . Q 3 HOH C 4 604 24 HOH HOH . Q 3 HOH C 5 605 27 HOH HOH . Q 3 HOH C 6 606 31 HOH HOH . Q 3 HOH C 7 607 38 HOH HOH . Q 3 HOH C 8 608 44 HOH HOH . Q 3 HOH C 9 609 48 HOH HOH . Q 3 HOH C 10 610 55 HOH HOH . Q 3 HOH C 11 611 63 HOH HOH . Q 3 HOH C 12 612 66 HOH HOH . Q 3 HOH C 13 613 72 HOH HOH . Q 3 HOH C 14 614 84 HOH HOH . Q 3 HOH C 15 615 91 HOH HOH . Q 3 HOH C 16 616 92 HOH HOH . Q 3 HOH C 17 617 94 HOH HOH . R 3 HOH D 1 601 102 HOH HOH . R 3 HOH D 2 602 112 HOH HOH . R 3 HOH D 3 603 113 HOH HOH . R 3 HOH D 4 604 114 HOH HOH . R 3 HOH D 5 605 115 HOH HOH . R 3 HOH D 6 606 116 HOH HOH . R 3 HOH D 7 607 117 HOH HOH . R 3 HOH D 8 608 118 HOH HOH . R 3 HOH D 9 609 119 HOH HOH . R 3 HOH D 10 610 120 HOH HOH . R 3 HOH D 11 611 121 HOH HOH . R 3 HOH D 12 612 123 HOH HOH . R 3 HOH D 13 613 124 HOH HOH . R 3 HOH D 14 614 125 HOH HOH . R 3 HOH D 15 615 126 HOH HOH . R 3 HOH D 16 616 128 HOH HOH . R 3 HOH D 17 617 129 HOH HOH . S 3 HOH E 1 601 10 HOH HOH . S 3 HOH E 2 602 11 HOH HOH . S 3 HOH E 3 603 16 HOH HOH . S 3 HOH E 4 604 22 HOH HOH . S 3 HOH E 5 605 30 HOH HOH . S 3 HOH E 6 606 34 HOH HOH . S 3 HOH E 7 607 35 HOH HOH . S 3 HOH E 8 608 46 HOH HOH . S 3 HOH E 9 609 52 HOH HOH . S 3 HOH E 10 610 53 HOH HOH . S 3 HOH E 11 611 56 HOH HOH . S 3 HOH E 12 612 70 HOH HOH . S 3 HOH E 13 613 82 HOH HOH . S 3 HOH E 14 614 85 HOH HOH . S 3 HOH E 15 615 93 HOH HOH . S 3 HOH E 16 616 97 HOH HOH . S 3 HOH E 17 617 98 HOH HOH . S 3 HOH E 18 618 131 HOH HOH . S 3 HOH E 19 619 132 HOH HOH . T 3 HOH F 1 601 3 HOH HOH . T 3 HOH F 2 602 4 HOH HOH . T 3 HOH F 3 603 9 HOH HOH . T 3 HOH F 4 604 23 HOH HOH . T 3 HOH F 5 605 29 HOH HOH . T 3 HOH F 6 606 39 HOH HOH . T 3 HOH F 7 607 40 HOH HOH . T 3 HOH F 8 608 42 HOH HOH . T 3 HOH F 9 609 51 HOH HOH . T 3 HOH F 10 610 61 HOH HOH . T 3 HOH F 11 611 69 HOH HOH . T 3 HOH F 12 612 71 HOH HOH . T 3 HOH F 13 613 76 HOH HOH . T 3 HOH F 14 614 88 HOH HOH . T 3 HOH F 15 615 90 HOH HOH . T 3 HOH F 16 616 99 HOH HOH . T 3 HOH F 17 617 105 HOH HOH . T 3 HOH F 18 618 106 HOH HOH . T 3 HOH F 19 619 107 HOH HOH . T 3 HOH F 20 620 127 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 P6L . . . N 2 -57.627 -12.616 50.164 1 118.39 ? C1 P6L 502 F 1 HETATM 2 C C2 P6L . . . N 2 -57.808 -11.763 51.446 1 109.86 ? C2 P6L 502 F 1 HETATM 3 O O3 P6L . . . N 2 -59.036 -12.142 52.086 1 104.57 ? O3 P6L 502 F 1 HETATM 4 O O4 P6L . . . N 2 -61.113 -14.057 43.913 1 64.86 ? O4 P6L 502 F 1 HETATM 5 C C5 P6L . . . N 2 -59.886 -13.746 44.666 1 74.53 ? C5 P6L 502 F 1 HETATM 6 C C6 P6L . . . N 2 -58.563 -13.926 43.907 1 65.48 ? C6 P6L 502 F 1 HETATM 7 C C7 P6L . . . N 2 -59.902 -12.367 45.347 1 90.08 ? C7 P6L 502 F 1 HETATM 8 O O8 P6L . . . N 2 -58.211 -15.321 43.827 1 57.28 ? O8 P6L 502 F 1 HETATM 9 O O9 P6L . . . N 2 -58.974 -12.311 46.467 1 118.55 ? O9 P6L 502 F 1 HETATM 10 O O10 P6L . . . N 2 -57.893 -14.283 47.696 1 127.76 ? O10 P6L 502 F 1 HETATM 11 P P11 P6L . . . N 2 -58.966 -13.23 47.834 1 139.26 ? P11 P6L 502 F 1 HETATM 12 O O12 P6L . . . N 2 -58.506 -12.25 49.068 1 136.92 ? O12 P6L 502 F 1 HETATM 13 O O13 P6L . . . N 2 -60.384 -13.702 48.104 1 139.57 ? O13 P6L 502 F 1 HETATM 14 C C14 P6L . . . N 2 -61.262 -13.872 42.428 1 64.53 ? C14 P6L 502 F 1 HETATM 15 O O15 P6L . . . N 2 -60.765 -12.906 41.842 1 57.16 ? O15 P6L 502 F 1 HETATM 16 C C16 P6L . . . N 2 -57.165 -15.746 42.868 1 72.52 ? C16 P6L 502 F 1 HETATM 17 O O17 P6L . . . N 2 -56.801 -16.911 42.921 1 63.61 ? O17 P6L 502 F 1 HETATM 18 C C18 P6L . . . N 2 -62.077 -14.832 41.57 1 59.09 ? C18 P6L 502 F 1 HETATM 19 C C19 P6L . . . N 2 -62.298 -14.178 40.185 1 56.62 ? C19 P6L 502 F 1 HETATM 20 C C20 P6L . . . N 2 -63.146 -15.065 39.262 1 62 ? C20 P6L 502 F 1 HETATM 21 C C21 P6L . . . N 2 -63.23 -14.673 37.763 1 66.47 ? C21 P6L 502 F 1 HETATM 22 C C22 P6L . . . N 2 -64.365 -15.379 36.959 1 67.19 ? C22 P6L 502 F 1 HETATM 23 C C23 P6L . . . N 2 -64.177 -16.218 35.886 1 69.27 ? C23 P6L 502 F 1 HETATM 24 C C24 P6L . . . N 2 -65.255 -16.96 35.029 1 69.24 ? C24 P6L 502 F 1 HETATM 25 C C25 P6L . . . N 2 -66.78 -16.822 35.361 1 66.84 ? C25 P6L 502 F 1 HETATM 26 C C26 P6L . . . N 2 -67.765 -17.518 34.402 1 64.65 ? C26 P6L 502 F 1 HETATM 27 C C27 P6L . . . N 2 -56.507 -14.798 41.838 1 72.57 ? C27 P6L 502 F 1 HETATM 28 C C28 P6L . . . N 2 -56.889 -15.107 40.375 1 66.32 ? C28 P6L 502 F 1 HETATM 29 C C29 P6L . . . N 2 -58.343 -14.761 40.044 1 62.56 ? C29 P6L 502 F 1 HETATM 30 C C30 P6L . . . N 2 -58.48 -13.541 39.146 1 61.65 ? C30 P6L 502 F 1 HETATM 31 C C31 P6L . . . N 2 -59.318 -13.777 37.884 1 59.05 ? C31 P6L 502 F 1 HETATM 32 C C32 P6L . . . N 2 -58.587 -14.575 36.791 1 62.16 ? C32 P6L 502 F 1 HETATM 33 C C33 P6L . . . N 2 -58.13 -13.678 35.664 1 58.1 ? C33 P6L 502 F 1 HETATM 34 C C34 P6L . . . N 2 -58.401 -13.821 34.35 1 62.97 ? C34 P6L 502 F 1 HETATM 35 C C35 P6L . . . N 2 -59.23 -14.914 33.679 1 66.41 ? C35 P6L 502 F 1 HETATM 36 C C36 P6L . . . N 2 -59.779 -14.452 32.303 1 64.54 ? C36 P6L 502 F 1 HETATM 37 C C37 P6L . . . N 2 -67.449 -17.25 32.915 1 69.59 ? C37 P6L 502 F 1 HETATM 38 C C38 P6L . . . N 2 -59.019 -14.897 31.043 1 66.08 ? C38 P6L 502 F 1 HETATM 39 C C39 P6L . . . N 2 -57.931 -13.9 30.558 1 74.13 ? C39 P6L 502 F 1 HETATM 40 C C40 P6L . . . N 2 -58.421 -12.681 29.734 1 69.13 ? C40 P6L 502 F 1 HETATM 41 C C41 P6L . . . N 2 -57.328 -11.946 28.923 1 66.69 ? C41 P6L 502 F 1 HETATM 42 C C42 P6L . . . N 2 -57.886 -11.36 27.615 1 56.48 ? C42 P6L 502 F 1 HETATM 43 C C43 P6L . . . N 2 -57.816 -12.307 26.407 1 50.95 ? C43 P6L 502 F 1 HETATM 44 C C44 P6L . . . N 2 -58.491 -13.668 26.574 1 47.58 ? C44 P6L 502 F 1 HETATM 45 C C45 P6L . . . N 2 -66.57 -18.315 32.21 1 65.18 ? C45 P6L 502 F 1 HETATM 46 C C46 P6L . . . N 2 -65.393 -17.771 31.354 1 66.37 ? C46 P6L 502 F 1 HETATM 47 C C47 P6L . . . N 2 -65.664 -16.615 30.348 1 64.58 ? C47 P6L 502 F 1 HETATM 48 C C48 P6L . . . N 2 -64.399 -15.858 29.865 1 59.23 ? C48 P6L 502 F 1 HETATM 49 C C49 P6L . . . N 2 -63.316 -16.795 29.327 1 57.86 ? C49 P6L 502 F 1 HETATM 50 C C50 P6L . . . N 2 -57.733 -10.237 51.174 1 103.81 ? C50 P6L 502 F 1 HETATM 51 O O51 P6L . . . N 2 -58.613 -9.428 51.981 1 84.67 ? O51 P6L 502 F 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 51 #