data_4NHC # _model_server_result.job_id R3IY-sj2Y0v2IrN2zeI62g _model_server_result.datetime_utc '2025-01-10 11:03:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4nhc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 4NHC # _exptl.entry_id 4NHC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 114.023 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'trifluoroacetic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4NHC _cell.length_a 226.107 _cell.length_b 226.107 _cell.length_c 41.824 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4NHC _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 L CYS 23 1_555 A SG CYS 89 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? disulf ? disulf2 A SG CYS 135 L CYS 134 1_555 A SG CYS 195 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? disulf ? disulf3 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? disulf ? disulf4 B SG CYS 154 H CYS 142 1_555 B SG CYS 210 H CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? covale ? covale1 C C ACE 1 P ACE 670 1_555 C N ASN 2 P ASN 671 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 sing covale ? covale2 C C ASN 8 P ASN 677 1_555 C N DIV 9 P DIV 678 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 sing covale ? covale3 C C DIV 9 P DIV 678 1_555 C N LEU 10 P LEU 679 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.471 sing covale ? covale4 C CG1 DIV 9 P DIV 678 1_555 C CE MK8 12 P MK8 681 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.508 doub covale ? covale5 C C TRP 11 P TRP 680 1_555 C N MK8 12 P MK8 681 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.489 sing covale ? covale6 C C MK8 12 P MK8 681 1_555 C N ILE 13 P ILE 682 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.491 sing # _chem_comp.formula 'C2 H F3 O2' _chem_comp.formula_weight 114.023 _chem_comp.id TFA _chem_comp.mon_nstd_flag . _chem_comp.name 'trifluoroacetic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 TFA sing 342 n n C1 O TFA doub 343 n n C1 OXT TFA sing 344 n n C2 F1 TFA sing 345 n n C2 F2 TFA sing 346 n n C2 F3 TFA sing 347 n n OXT HXT TFA sing 348 n n # _atom_sites.entry_id 4NHC _atom_sites.fract_transf_matrix[1][1] 0.004423 _atom_sites.fract_transf_matrix[1][2] 0.002553 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005107 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02391 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 TFA L 1 301 7204 TFA TFA . E 5 PO4 H 1 301 8008 PO4 PO4 . F 4 TFA H 1 302 7203 TFA TFA . G 6 HOH L 1 401 3 HOH HOH . G 6 HOH L 2 402 6 HOH HOH . G 6 HOH L 3 403 7 HOH HOH . G 6 HOH L 4 404 8 HOH HOH . G 6 HOH L 5 405 10 HOH HOH . G 6 HOH L 6 406 12 HOH HOH . G 6 HOH L 7 407 13 HOH HOH . G 6 HOH L 8 408 20 HOH HOH . G 6 HOH L 9 409 22 HOH HOH . G 6 HOH L 10 410 23 HOH HOH . G 6 HOH L 11 411 26 HOH HOH . G 6 HOH L 12 412 29 HOH HOH . H 6 HOH H 1 401 1 HOH HOH . H 6 HOH H 2 402 2 HOH HOH . H 6 HOH H 3 403 5 HOH HOH . H 6 HOH H 4 404 9 HOH HOH . H 6 HOH H 5 405 11 HOH HOH . H 6 HOH H 6 406 14 HOH HOH . H 6 HOH H 7 407 15 HOH HOH . H 6 HOH H 8 408 16 HOH HOH . H 6 HOH H 9 409 17 HOH HOH . H 6 HOH H 10 410 18 HOH HOH . H 6 HOH H 11 411 19 HOH HOH . H 6 HOH H 12 412 21 HOH HOH . H 6 HOH H 13 413 24 HOH HOH . H 6 HOH H 14 414 25 HOH HOH . H 6 HOH H 15 415 27 HOH HOH . H 6 HOH H 16 416 28 HOH HOH . I 6 HOH P 1 701 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 TFA . . . D 4 37.743 -56.345 15.656 0.8 106.67 ? C1 TFA 301 L 1 HETATM 2 C C2 TFA . . . D 4 37.372 -54.955 16.046 0.8 110.7 ? C2 TFA 301 L 1 HETATM 3 O O TFA . . . D 4 38.774 -56.882 16.14 0.8 103.3 ? O TFA 301 L 1 HETATM 4 F F1 TFA . . . D 4 38.243 -54.507 16.94 0.8 106.62 ? F1 TFA 301 L 1 HETATM 5 F F2 TFA . . . D 4 37.407 -54.16 14.985 0.8 110.06 ? F2 TFA 301 L 1 HETATM 6 F F3 TFA . . . D 4 36.146 -54.946 16.56 0.8 116.79 ? F3 TFA 301 L 1 HETATM 7 O OXT TFA . . . D 4 37.024 -56.98 14.842 0.8 104.56 ? OXT TFA 301 L 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 1150 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 7 #