data_4NI0
#
_model_server_result.job_id            JCWawQSNmQqOIRgn7l3cPQ 
_model_server_result.datetime_utc      '2024-12-01 19:15:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ni0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":204}' 
#
_entry.id    4NI0 
#
_exptl.entry_id    4NI0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              235.262 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            5-[(2S)-2,3-dihydro-1,4-benzodioxin-2-yl]-2,4-dihydro-3H-1,2,4-triazole-3-thione 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4NI0 
_cell.length_a            62.0636 
_cell.length_b            62.0636 
_cell.length_c            173.8816 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4NI0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        91 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/4 0 -1 0 -1 0 0 0 0 -1 62.0636 62.0636 43.4704 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 E N N 
? 5 F N N 
? 5 M N N 
? 5 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B SG CYS 93 B CYS 93 1_555 M S1 2P3 . B 2P3 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.933 ? 
covale ? covale2 B SG CYS 112 B CYS 112 1_555 N S1 2P3 . B 2P3 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.781 ? 
metalc ? metalc1 A NE2 HIS 87 A HIS 87 1_555 D FE HEM . A HEM 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? 
metalc ? metalc2 C C CMO . A CMO 201 1_555 D FE HEM . A HEM 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.809 ? 
metalc ? metalc3 B NE2 HIS 92 B HIS 92 1_555 L FE HEM . B HEM 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? 
metalc ? metalc4 K C CMO . B CMO 201 1_555 L FE HEM . B HEM 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.86 ? 
#
_chem_comp.formula           'C10 H9 N3 O2 S' 
_chem_comp.formula_weight    235.262 
_chem_comp.id                2P3 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              5-[(2S)-2,3-dihydro-1,4-benzodioxin-2-yl]-2,4-dihydro-3H-1,2,4-triazole-3-thione 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O9 C10 2P3 sing 1 n n 
O9 C8 2P3 sing 2 n n 
C16 C10 2P3 doub 3 n y 
C16 C15 2P3 sing 4 n y 
C10 C11 2P3 sing 5 n y 
C15 C14 2P3 doub 6 n y 
C8 C7 2P3 sing 7 n n 
C11 O12 2P3 sing 8 n n 
C11 C13 2P3 doub 9 n y 
O12 C7 2P3 sing 10 n n 
C14 C13 2P3 sing 11 n y 
N3 C2 2P3 sing 12 n n 
N3 C4 2P3 sing 13 n n 
S1 C2 2P3 doub 14 n n 
C7 C4 2P3 sing 15 n n 
C2 N6 2P3 sing 16 n n 
C4 N5 2P3 doub 17 n n 
N6 N5 2P3 sing 18 n n 
N3 H1 2P3 sing 19 n n 
N6 H2 2P3 sing 20 n n 
C7 H3 2P3 sing 21 n n 
C8 H4 2P3 sing 22 n n 
C8 H5 2P3 sing 23 n n 
C13 H6 2P3 sing 24 n n 
C14 H7 2P3 sing 25 n n 
C15 H8 2P3 sing 26 n n 
C16 H9 2P3 sing 27 n n 
#
_atom_sites.entry_id                     4NI0 
_atom_sites.fract_transf_matrix[1][1]    0.016113 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016113 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00575 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 CMO A 1 201 142 CMO CMO . 
D 4 HEM A 1 202 143 HEM HEM . 
E 5 2P3 A 1 203 3 2P3 2JX . 
F 5 2P3 A 1 204 4 2P3 2JX . 
G 6 MBN A 1 205 5 MBN MBN . 
H 6 MBN A 1 206 6 MBN MBN . 
I 6 MBN A 1 207 7 MBN MBN . 
J 7 PO4 A 1 208 10 PO4 PO4 . 
K 3 CMO B 1 201 147 CMO CMO . 
L 4 HEM B 1 202 148 HEM HEM . 
M 5 2P3 B 1 203 1 2P3 2JX . 
N 5 2P3 B 1 204 2 2P3 2JX . 
O 7 PO4 B 1 205 8 PO4 PO4 . 
P 7 PO4 B 1 206 9 PO4 PO4 . 
Q 8 HOH A 1 301 3 HOH HOH . 
Q 8 HOH A 2 302 4 HOH HOH . 
Q 8 HOH A 3 303 7 HOH HOH . 
Q 8 HOH A 4 304 8 HOH HOH . 
Q 8 HOH A 5 305 9 HOH HOH . 
Q 8 HOH A 6 306 10 HOH HOH . 
Q 8 HOH A 7 307 11 HOH HOH . 
Q 8 HOH A 8 308 12 HOH HOH . 
Q 8 HOH A 9 309 16 HOH HOH . 
Q 8 HOH A 10 310 17 HOH HOH . 
Q 8 HOH A 11 311 18 HOH HOH . 
Q 8 HOH A 12 312 19 HOH HOH . 
Q 8 HOH A 13 313 20 HOH HOH . 
Q 8 HOH A 14 314 21 HOH HOH . 
Q 8 HOH A 15 315 22 HOH HOH . 
Q 8 HOH A 16 316 34 HOH HOH . 
Q 8 HOH A 17 317 35 HOH HOH . 
Q 8 HOH A 18 318 36 HOH HOH . 
Q 8 HOH A 19 319 37 HOH HOH . 
Q 8 HOH A 20 320 38 HOH HOH . 
Q 8 HOH A 21 321 39 HOH HOH . 
Q 8 HOH A 22 322 40 HOH HOH . 
Q 8 HOH A 23 323 41 HOH HOH . 
Q 8 HOH A 24 324 42 HOH HOH . 
Q 8 HOH A 25 325 43 HOH HOH . 
Q 8 HOH A 26 326 50 HOH HOH . 
Q 8 HOH A 27 327 51 HOH HOH . 
Q 8 HOH A 28 328 52 HOH HOH . 
Q 8 HOH A 29 329 53 HOH HOH . 
Q 8 HOH A 30 330 54 HOH HOH . 
Q 8 HOH A 31 331 59 HOH HOH . 
Q 8 HOH A 32 332 62 HOH HOH . 
Q 8 HOH A 33 333 63 HOH HOH . 
Q 8 HOH A 34 334 64 HOH HOH . 
Q 8 HOH A 35 335 65 HOH HOH . 
Q 8 HOH A 36 336 66 HOH HOH . 
Q 8 HOH A 37 337 67 HOH HOH . 
Q 8 HOH A 38 338 68 HOH HOH . 
Q 8 HOH A 39 339 69 HOH HOH . 
Q 8 HOH A 40 340 70 HOH HOH . 
Q 8 HOH A 41 341 71 HOH HOH . 
Q 8 HOH A 42 342 72 HOH HOH . 
Q 8 HOH A 43 343 73 HOH HOH . 
Q 8 HOH A 44 344 74 HOH HOH . 
Q 8 HOH A 45 345 75 HOH HOH . 
Q 8 HOH A 46 346 76 HOH HOH . 
Q 8 HOH A 47 347 77 HOH HOH . 
Q 8 HOH A 48 348 79 HOH HOH . 
Q 8 HOH A 49 349 85 HOH HOH . 
Q 8 HOH A 50 350 90 HOH HOH . 
Q 8 HOH A 51 351 92 HOH HOH . 
Q 8 HOH A 52 352 93 HOH HOH . 
Q 8 HOH A 53 353 94 HOH HOH . 
Q 8 HOH A 54 354 95 HOH HOH . 
Q 8 HOH A 55 355 96 HOH HOH . 
Q 8 HOH A 56 356 105 HOH HOH . 
Q 8 HOH A 57 357 106 HOH HOH . 
Q 8 HOH A 58 358 107 HOH HOH . 
Q 8 HOH A 59 359 108 HOH HOH . 
Q 8 HOH A 60 360 109 HOH HOH . 
Q 8 HOH A 61 361 110 HOH HOH . 
Q 8 HOH A 62 362 111 HOH HOH . 
Q 8 HOH A 63 363 112 HOH HOH . 
Q 8 HOH A 64 364 113 HOH HOH . 
Q 8 HOH A 65 365 119 HOH HOH . 
Q 8 HOH A 66 366 120 HOH HOH . 
Q 8 HOH A 67 367 121 HOH HOH . 
Q 8 HOH A 68 368 122 HOH HOH . 
Q 8 HOH A 69 369 123 HOH HOH . 
Q 8 HOH A 70 370 124 HOH HOH . 
Q 8 HOH A 71 371 125 HOH HOH . 
Q 8 HOH A 72 372 126 HOH HOH . 
Q 8 HOH A 73 373 127 HOH HOH . 
Q 8 HOH A 74 374 128 HOH HOH . 
Q 8 HOH A 75 375 129 HOH HOH . 
Q 8 HOH A 76 376 130 HOH HOH . 
Q 8 HOH A 77 377 131 HOH HOH . 
Q 8 HOH A 78 378 132 HOH HOH . 
Q 8 HOH A 79 379 133 HOH HOH . 
Q 8 HOH A 80 380 136 HOH HOH . 
Q 8 HOH A 81 381 138 HOH HOH . 
Q 8 HOH A 82 382 154 HOH HOH . 
Q 8 HOH A 83 383 155 HOH HOH . 
Q 8 HOH A 84 384 156 HOH HOH . 
Q 8 HOH A 85 385 157 HOH HOH . 
Q 8 HOH A 86 386 158 HOH HOH . 
R 8 HOH B 1 301 1 HOH HOH . 
R 8 HOH B 2 302 2 HOH HOH . 
R 8 HOH B 3 303 5 HOH HOH . 
R 8 HOH B 4 304 6 HOH HOH . 
R 8 HOH B 5 305 13 HOH HOH . 
R 8 HOH B 6 306 14 HOH HOH . 
R 8 HOH B 7 307 15 HOH HOH . 
R 8 HOH B 8 308 23 HOH HOH . 
R 8 HOH B 9 309 24 HOH HOH . 
R 8 HOH B 10 310 25 HOH HOH . 
R 8 HOH B 11 311 26 HOH HOH . 
R 8 HOH B 12 312 27 HOH HOH . 
R 8 HOH B 13 313 28 HOH HOH . 
R 8 HOH B 14 314 29 HOH HOH . 
R 8 HOH B 15 315 30 HOH HOH . 
R 8 HOH B 16 316 31 HOH HOH . 
R 8 HOH B 17 317 32 HOH HOH . 
R 8 HOH B 18 318 33 HOH HOH . 
R 8 HOH B 19 319 44 HOH HOH . 
R 8 HOH B 20 320 45 HOH HOH . 
R 8 HOH B 21 321 46 HOH HOH . 
R 8 HOH B 22 322 47 HOH HOH . 
R 8 HOH B 23 323 48 HOH HOH . 
R 8 HOH B 24 324 49 HOH HOH . 
R 8 HOH B 25 325 55 HOH HOH . 
R 8 HOH B 26 326 56 HOH HOH . 
R 8 HOH B 27 327 57 HOH HOH . 
R 8 HOH B 28 328 58 HOH HOH . 
R 8 HOH B 29 329 60 HOH HOH . 
R 8 HOH B 30 330 61 HOH HOH . 
R 8 HOH B 31 331 78 HOH HOH . 
R 8 HOH B 32 332 80 HOH HOH . 
R 8 HOH B 33 333 81 HOH HOH . 
R 8 HOH B 34 334 82 HOH HOH . 
R 8 HOH B 35 335 83 HOH HOH . 
R 8 HOH B 36 336 84 HOH HOH . 
R 8 HOH B 37 337 86 HOH HOH . 
R 8 HOH B 38 338 87 HOH HOH . 
R 8 HOH B 39 339 88 HOH HOH . 
R 8 HOH B 40 340 89 HOH HOH . 
R 8 HOH B 41 341 91 HOH HOH . 
R 8 HOH B 42 342 97 HOH HOH . 
R 8 HOH B 43 343 98 HOH HOH . 
R 8 HOH B 44 344 99 HOH HOH . 
R 8 HOH B 45 345 100 HOH HOH . 
R 8 HOH B 46 346 101 HOH HOH . 
R 8 HOH B 47 347 102 HOH HOH . 
R 8 HOH B 48 348 103 HOH HOH . 
R 8 HOH B 49 349 104 HOH HOH . 
R 8 HOH B 50 350 114 HOH HOH . 
R 8 HOH B 51 351 115 HOH HOH . 
R 8 HOH B 52 352 116 HOH HOH . 
R 8 HOH B 53 353 117 HOH HOH . 
R 8 HOH B 54 354 118 HOH HOH . 
R 8 HOH B 55 355 134 HOH HOH . 
R 8 HOH B 56 356 135 HOH HOH . 
R 8 HOH B 57 357 137 HOH HOH . 
R 8 HOH B 58 358 139 HOH HOH . 
R 8 HOH B 59 359 140 HOH HOH . 
R 8 HOH B 60 360 141 HOH HOH . 
R 8 HOH B 61 361 142 HOH HOH . 
R 8 HOH B 62 362 143 HOH HOH . 
R 8 HOH B 63 363 144 HOH HOH . 
R 8 HOH B 64 364 145 HOH HOH . 
R 8 HOH B 65 365 146 HOH HOH . 
R 8 HOH B 66 366 147 HOH HOH . 
R 8 HOH B 67 367 148 HOH HOH . 
R 8 HOH B 68 368 149 HOH HOH . 
R 8 HOH B 69 369 150 HOH HOH . 
R 8 HOH B 70 370 151 HOH HOH . 
R 8 HOH B 71 371 152 HOH HOH . 
R 8 HOH B 72 372 153 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 2P3 . . . N 5 56.587 23.195 29.271 1 63.26 ? C2 2P3 204 B 1 
HETATM 2 N N3 2P3 . . . N 5 56.486 22.689 28.013 1 61.11 ? N3 2P3 204 B 1 
HETATM 3 S S1 2P3 . . . N 5 57.7 24.662 29.426 1 65.73 ? S1 2P3 204 B 1 
HETATM 4 C C4 2P3 . . . N 5 55.614 21.671 28.236 1 63.98 ? C4 2P3 204 B 1 
HETATM 5 N N5 2P3 . . . N 5 55.191 21.493 29.409 1 66.71 ? N5 2P3 204 B 1 
HETATM 6 N N6 2P3 . . . N 5 55.853 22.53 30.101 1 53.94 ? N6 2P3 204 B 1 
HETATM 7 C C7 2P3 . . . N 5 55.186 20.814 27.062 1 68.53 ? C7 2P3 204 B 1 
HETATM 8 C C8 2P3 . . . N 5 56.309 20.648 26.303 1 75.09 ? C8 2P3 204 B 1 
HETATM 9 O O9 2P3 . . . N 5 55.934 20.205 24.953 1 84.52 ? O9 2P3 204 B 1 
HETATM 10 C C10 2P3 . . . N 5 55.315 18.908 24.784 1 76.15 ? C10 2P3 204 B 1 
HETATM 11 C C11 2P3 . . . N 5 54.554 18.36 25.879 1 77.6 ? C11 2P3 204 B 1 
HETATM 12 O O12 2P3 . . . N 5 54.436 19.205 27.115 1 66.66 ? O12 2P3 204 B 1 
HETATM 13 C C13 2P3 . . . N 5 53.946 17.047 25.727 1 84.12 ? C13 2P3 204 B 1 
HETATM 14 C C14 2P3 . . . N 5 54.103 16.321 24.484 1 75.34 ? C14 2P3 204 B 1 
HETATM 15 C C15 2P3 . . . N 5 54.873 16.901 23.384 1 68.73 ? C15 2P3 204 B 1 
HETATM 16 C C16 2P3 . . . N 5 55.488 18.2 23.538 1 64.8 ? C16 2P3 204 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           784 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           16 
#