data_4NI1 # _model_server_result.job_id N_cfaTyIvPFeBdn4qHUUFw _model_server_result.datetime_utc '2024-11-23 10:56:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ni1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":205}' # _entry.id 4NI1 # _exptl.entry_id 4NI1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.138 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description TOLUENE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4NI1 _cell.length_a 53.12 _cell.length_b 53.12 _cell.length_c 192.1 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4NI1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 53.12 53.12 96.05 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 G N N ? 6 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B SG CYS 93 B CYS 93 1_555 K S1 2JX . B 2JX 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.832 ? covale ? covale2 B SG CYS 112 B CYS 112 1_555 L S1 2JX . B 2JX 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.736 ? metalc ? metalc1 A NE2 HIS 87 A HIS 87 1_555 D FE HEM . A HEM 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc2 C C CMO . A CMO 201 1_555 D FE HEM . A HEM 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.815 ? metalc ? metalc3 B NE2 HIS 92 B HIS 92 1_555 J FE HEM . B HEM 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc4 I C CMO . B CMO 201 1_555 J FE HEM . B HEM 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.851 ? # _chem_comp.formula 'C7 H8' _chem_comp.formula_weight 92.138 _chem_comp.id MBN _chem_comp.mon_nstd_flag . _chem_comp.name TOLUENE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 MBN sing 307 n n C H1 MBN sing 308 n n C H2A MBN sing 309 n n C H3A MBN sing 310 n n C1 C2 MBN doub 311 n y C1 C6 MBN sing 312 n y C2 C3 MBN sing 313 n y C2 H2 MBN sing 314 n n C3 C4 MBN doub 315 n y C3 H3 MBN sing 316 n n C4 C5 MBN sing 317 n y C4 H4 MBN sing 318 n n C5 C6 MBN doub 319 n y C5 H5 MBN sing 320 n n C6 H6 MBN sing 321 n n # _atom_sites.entry_id 4NI1 _atom_sites.fract_transf_matrix[1][1] 0.018825 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018825 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005206 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CMO A 1 201 142 CMO CMO . D 4 HEM A 1 202 143 HEM HEM . E 5 2JX A 1 203 3 2JX CSH . F 5 2JX A 1 204 4 2JX CSH . G 6 MBN A 1 205 5 MBN TOL . H 6 MBN A 1 206 6 MBN TOL . I 3 CMO B 1 201 147 CMO CMO . J 4 HEM B 1 202 148 HEM HEM . K 5 2JX B 1 203 1 2JX CSH . L 5 2JX B 1 204 2 2JX CSH . M 7 HOH A 1 301 2 HOH HOH . M 7 HOH A 2 302 7 HOH HOH . M 7 HOH A 3 303 9 HOH HOH . M 7 HOH A 4 304 12 HOH HOH . M 7 HOH A 5 305 14 HOH HOH . M 7 HOH A 6 306 15 HOH HOH . M 7 HOH A 7 307 16 HOH HOH . M 7 HOH A 8 308 17 HOH HOH . M 7 HOH A 9 309 18 HOH HOH . M 7 HOH A 10 310 19 HOH HOH . M 7 HOH A 11 311 21 HOH HOH . M 7 HOH A 12 312 24 HOH HOH . M 7 HOH A 13 313 26 HOH HOH . M 7 HOH A 14 314 27 HOH HOH . M 7 HOH A 15 315 28 HOH HOH . M 7 HOH A 16 316 29 HOH HOH . M 7 HOH A 17 317 30 HOH HOH . M 7 HOH A 18 318 31 HOH HOH . M 7 HOH A 19 319 32 HOH HOH . M 7 HOH A 20 320 33 HOH HOH . M 7 HOH A 21 321 34 HOH HOH . M 7 HOH A 22 322 36 HOH HOH . M 7 HOH A 23 323 40 HOH HOH . M 7 HOH A 24 324 43 HOH HOH . M 7 HOH A 25 325 44 HOH HOH . M 7 HOH A 26 326 45 HOH HOH . M 7 HOH A 27 327 48 HOH HOH . M 7 HOH A 28 328 50 HOH HOH . M 7 HOH A 29 329 52 HOH HOH . M 7 HOH A 30 330 53 HOH HOH . M 7 HOH A 31 331 55 HOH HOH . M 7 HOH A 32 332 56 HOH HOH . M 7 HOH A 33 333 57 HOH HOH . M 7 HOH A 34 334 58 HOH HOH . M 7 HOH A 35 335 59 HOH HOH . M 7 HOH A 36 336 60 HOH HOH . M 7 HOH A 37 337 61 HOH HOH . M 7 HOH A 38 338 62 HOH HOH . M 7 HOH A 39 339 64 HOH HOH . M 7 HOH A 40 340 66 HOH HOH . M 7 HOH A 41 341 68 HOH HOH . M 7 HOH A 42 342 70 HOH HOH . M 7 HOH A 43 343 71 HOH HOH . M 7 HOH A 44 344 72 HOH HOH . M 7 HOH A 45 345 73 HOH HOH . M 7 HOH A 46 346 75 HOH HOH . M 7 HOH A 47 347 77 HOH HOH . M 7 HOH A 48 348 78 HOH HOH . M 7 HOH A 49 349 80 HOH HOH . M 7 HOH A 50 350 83 HOH HOH . M 7 HOH A 51 351 86 HOH HOH . M 7 HOH A 52 352 87 HOH HOH . M 7 HOH A 53 353 88 HOH HOH . M 7 HOH A 54 354 89 HOH HOH . M 7 HOH A 55 355 90 HOH HOH . M 7 HOH A 56 356 94 HOH HOH . M 7 HOH A 57 357 95 HOH HOH . M 7 HOH A 58 358 97 HOH HOH . M 7 HOH A 59 359 102 HOH HOH . M 7 HOH A 60 360 103 HOH HOH . M 7 HOH A 61 361 104 HOH HOH . M 7 HOH A 62 362 105 HOH HOH . M 7 HOH A 63 363 107 HOH HOH . M 7 HOH A 64 364 109 HOH HOH . M 7 HOH A 65 365 110 HOH HOH . M 7 HOH A 66 366 112 HOH HOH . M 7 HOH A 67 367 114 HOH HOH . M 7 HOH A 68 368 115 HOH HOH . M 7 HOH A 69 369 116 HOH HOH . M 7 HOH A 70 370 117 HOH HOH . M 7 HOH A 71 371 118 HOH HOH . M 7 HOH A 72 372 119 HOH HOH . M 7 HOH A 73 373 123 HOH HOH . M 7 HOH A 74 374 126 HOH HOH . M 7 HOH A 75 375 128 HOH HOH . M 7 HOH A 76 376 130 HOH HOH . M 7 HOH A 77 377 131 HOH HOH . M 7 HOH A 78 378 132 HOH HOH . M 7 HOH A 79 379 133 HOH HOH . M 7 HOH A 80 380 136 HOH HOH . M 7 HOH A 81 381 139 HOH HOH . M 7 HOH A 82 382 141 HOH HOH . M 7 HOH A 83 383 144 HOH HOH . M 7 HOH A 84 384 145 HOH HOH . M 7 HOH A 85 385 146 HOH HOH . M 7 HOH A 86 386 147 HOH HOH . M 7 HOH A 87 387 148 HOH HOH . M 7 HOH A 88 388 149 HOH HOH . M 7 HOH A 89 389 150 HOH HOH . M 7 HOH A 90 390 151 HOH HOH . M 7 HOH A 91 391 152 HOH HOH . M 7 HOH A 92 392 153 HOH HOH . M 7 HOH A 93 393 154 HOH HOH . M 7 HOH A 94 394 157 HOH HOH . M 7 HOH A 95 395 158 HOH HOH . M 7 HOH A 96 396 159 HOH HOH . M 7 HOH A 97 397 160 HOH HOH . M 7 HOH A 98 398 161 HOH HOH . M 7 HOH A 99 399 162 HOH HOH . M 7 HOH A 100 400 163 HOH HOH . M 7 HOH A 101 401 164 HOH HOH . M 7 HOH A 102 402 165 HOH HOH . M 7 HOH A 103 403 166 HOH HOH . M 7 HOH A 104 404 167 HOH HOH . M 7 HOH A 105 405 168 HOH HOH . M 7 HOH A 106 406 169 HOH HOH . M 7 HOH A 107 407 170 HOH HOH . M 7 HOH A 108 408 172 HOH HOH . M 7 HOH A 109 409 173 HOH HOH . M 7 HOH A 110 410 194 HOH HOH . M 7 HOH A 111 411 195 HOH HOH . M 7 HOH A 112 412 196 HOH HOH . M 7 HOH A 113 413 197 HOH HOH . M 7 HOH A 114 414 198 HOH HOH . M 7 HOH A 115 415 199 HOH HOH . M 7 HOH A 116 416 200 HOH HOH . M 7 HOH A 117 417 201 HOH HOH . M 7 HOH A 118 418 202 HOH HOH . M 7 HOH A 119 419 203 HOH HOH . M 7 HOH A 120 420 204 HOH HOH . M 7 HOH A 121 421 205 HOH HOH . M 7 HOH A 122 422 206 HOH HOH . M 7 HOH A 123 423 207 HOH HOH . M 7 HOH A 124 424 208 HOH HOH . M 7 HOH A 125 425 220 HOH HOH . M 7 HOH A 126 426 221 HOH HOH . M 7 HOH A 127 427 222 HOH HOH . M 7 HOH A 128 428 223 HOH HOH . M 7 HOH A 129 429 224 HOH HOH . M 7 HOH A 130 430 225 HOH HOH . M 7 HOH A 131 431 231 HOH HOH . N 7 HOH B 1 301 1 HOH HOH . N 7 HOH B 2 302 3 HOH HOH . N 7 HOH B 3 303 4 HOH HOH . N 7 HOH B 4 304 5 HOH HOH . N 7 HOH B 5 305 6 HOH HOH . N 7 HOH B 6 306 8 HOH HOH . N 7 HOH B 7 307 10 HOH HOH . N 7 HOH B 8 308 11 HOH HOH . N 7 HOH B 9 309 13 HOH HOH . N 7 HOH B 10 310 20 HOH HOH . N 7 HOH B 11 311 22 HOH HOH . N 7 HOH B 12 312 23 HOH HOH . N 7 HOH B 13 313 25 HOH HOH . N 7 HOH B 14 314 35 HOH HOH . N 7 HOH B 15 315 37 HOH HOH . N 7 HOH B 16 316 38 HOH HOH . N 7 HOH B 17 317 39 HOH HOH . N 7 HOH B 18 318 41 HOH HOH . N 7 HOH B 19 319 42 HOH HOH . N 7 HOH B 20 320 46 HOH HOH . N 7 HOH B 21 321 47 HOH HOH . N 7 HOH B 22 322 49 HOH HOH . N 7 HOH B 23 323 51 HOH HOH . N 7 HOH B 24 324 54 HOH HOH . N 7 HOH B 25 325 63 HOH HOH . N 7 HOH B 26 326 65 HOH HOH . N 7 HOH B 27 327 67 HOH HOH . N 7 HOH B 28 328 69 HOH HOH . N 7 HOH B 29 329 74 HOH HOH . N 7 HOH B 30 330 76 HOH HOH . N 7 HOH B 31 331 79 HOH HOH . N 7 HOH B 32 332 81 HOH HOH . N 7 HOH B 33 333 82 HOH HOH . N 7 HOH B 34 334 84 HOH HOH . N 7 HOH B 35 335 85 HOH HOH . N 7 HOH B 36 336 91 HOH HOH . N 7 HOH B 37 337 92 HOH HOH . N 7 HOH B 38 338 93 HOH HOH . N 7 HOH B 39 339 96 HOH HOH . N 7 HOH B 40 340 98 HOH HOH . N 7 HOH B 41 341 99 HOH HOH . N 7 HOH B 42 342 100 HOH HOH . N 7 HOH B 43 343 101 HOH HOH . N 7 HOH B 44 344 106 HOH HOH . N 7 HOH B 45 345 108 HOH HOH . N 7 HOH B 46 346 111 HOH HOH . N 7 HOH B 47 347 113 HOH HOH . N 7 HOH B 48 348 120 HOH HOH . N 7 HOH B 49 349 121 HOH HOH . N 7 HOH B 50 350 122 HOH HOH . N 7 HOH B 51 351 124 HOH HOH . N 7 HOH B 52 352 125 HOH HOH . N 7 HOH B 53 353 127 HOH HOH . N 7 HOH B 54 354 129 HOH HOH . N 7 HOH B 55 355 134 HOH HOH . N 7 HOH B 56 356 135 HOH HOH . N 7 HOH B 57 357 137 HOH HOH . N 7 HOH B 58 358 138 HOH HOH . N 7 HOH B 59 359 140 HOH HOH . N 7 HOH B 60 360 142 HOH HOH . N 7 HOH B 61 361 143 HOH HOH . N 7 HOH B 62 362 155 HOH HOH . N 7 HOH B 63 363 156 HOH HOH . N 7 HOH B 64 364 171 HOH HOH . N 7 HOH B 65 365 174 HOH HOH . N 7 HOH B 66 366 175 HOH HOH . N 7 HOH B 67 367 176 HOH HOH . N 7 HOH B 68 368 177 HOH HOH . N 7 HOH B 69 369 178 HOH HOH . N 7 HOH B 70 370 179 HOH HOH . N 7 HOH B 71 371 180 HOH HOH . N 7 HOH B 72 372 181 HOH HOH . N 7 HOH B 73 373 182 HOH HOH . N 7 HOH B 74 374 183 HOH HOH . N 7 HOH B 75 375 184 HOH HOH . N 7 HOH B 76 376 185 HOH HOH . N 7 HOH B 77 377 186 HOH HOH . N 7 HOH B 78 378 187 HOH HOH . N 7 HOH B 79 379 188 HOH HOH . N 7 HOH B 80 380 189 HOH HOH . N 7 HOH B 81 381 190 HOH HOH . N 7 HOH B 82 382 191 HOH HOH . N 7 HOH B 83 383 192 HOH HOH . N 7 HOH B 84 384 193 HOH HOH . N 7 HOH B 85 385 209 HOH HOH . N 7 HOH B 86 386 210 HOH HOH . N 7 HOH B 87 387 211 HOH HOH . N 7 HOH B 88 388 212 HOH HOH . N 7 HOH B 89 389 213 HOH HOH . N 7 HOH B 90 390 214 HOH HOH . N 7 HOH B 91 391 215 HOH HOH . N 7 HOH B 92 392 216 HOH HOH . N 7 HOH B 93 393 217 HOH HOH . N 7 HOH B 94 394 218 HOH HOH . N 7 HOH B 95 395 219 HOH HOH . N 7 HOH B 96 396 226 HOH HOH . N 7 HOH B 97 397 227 HOH HOH . N 7 HOH B 98 398 228 HOH HOH . N 7 HOH B 99 399 229 HOH HOH . N 7 HOH B 100 400 230 HOH HOH . N 7 HOH B 101 401 232 HOH HOH . N 7 HOH B 102 402 233 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C MBN . . . G 6 39.388 21.623 65.174 1 61.06 ? C MBN 205 A 1 HETATM 2 C C1 MBN . . . G 6 38.785 21.329 66.531 1 54.01 ? C1 MBN 205 A 1 HETATM 3 C C2 MBN . . . G 6 38.05 22.334 67.209 1 51.74 ? C2 MBN 205 A 1 HETATM 4 C C3 MBN . . . G 6 37.476 22.07 68.492 1 54.12 ? C3 MBN 205 A 1 HETATM 5 C C4 MBN . . . G 6 37.645 20.786 69.088 1 47.73 ? C4 MBN 205 A 1 HETATM 6 C C5 MBN . . . G 6 38.379 19.782 68.409 1 39.67 ? C5 MBN 205 A 1 HETATM 7 C C6 MBN . . . G 6 38.947 20.05 67.135 1 49.27 ? C6 MBN 205 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 7 #