data_4NIV # _model_server_result.job_id FOErBb53YUa3aGm2bdnkEg _model_server_result.datetime_utc '2025-01-25 08:39:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4niv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 4NIV # _exptl.entry_id 4NIV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4NIV _cell.length_a 54.51 _cell.length_b 54.51 _cell.length_c 107.082 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4NIV _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 137 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf2 A SG CYS 25 A CYS 42 1_555 A SG CYS 41 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf3 A SG CYS 109 A CYS 128 1_555 A SG CYS 210 A CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 A SG CYS 116 A CYS 136 1_555 A SG CYS 183 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf5 A SG CYS 148 A CYS 168 1_555 A SG CYS 162 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc1 A OE1 GLU 52 A GLU 70 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc2 A O ASN 54 A ASN 72 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc3 A O VAL 57 A VAL 75 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc4 A OE2 GLU 62 A GLU 80 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc5 B CA CA . A CA 301 1_555 D O HOH . A HOH 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc6 B CA CA . A CA 301 1_555 D O HOH . A HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 4NIV _atom_sites.fract_transf_matrix[1][1] 0.018345 _atom_sites.fract_transf_matrix[1][2] 0.010592 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021183 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009339 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 301 1 CA CA . C 3 GOL A 1 302 2 GOL GOL . D 4 HOH A 1 401 3 HOH HOH . D 4 HOH A 2 402 4 HOH HOH . D 4 HOH A 3 403 5 HOH HOH . D 4 HOH A 4 404 6 HOH HOH . D 4 HOH A 5 405 7 HOH HOH . D 4 HOH A 6 406 8 HOH HOH . D 4 HOH A 7 407 9 HOH HOH . D 4 HOH A 8 408 10 HOH HOH . D 4 HOH A 9 409 11 HOH HOH . D 4 HOH A 10 410 12 HOH HOH . D 4 HOH A 11 411 13 HOH HOH . D 4 HOH A 12 412 14 HOH HOH . D 4 HOH A 13 413 16 HOH HOH . D 4 HOH A 14 414 17 HOH HOH . D 4 HOH A 15 415 18 HOH HOH . D 4 HOH A 16 416 19 HOH HOH . D 4 HOH A 17 417 20 HOH HOH . D 4 HOH A 18 418 21 HOH HOH . D 4 HOH A 19 419 22 HOH HOH . D 4 HOH A 20 420 23 HOH HOH . D 4 HOH A 21 421 24 HOH HOH . D 4 HOH A 22 422 26 HOH HOH . D 4 HOH A 23 423 27 HOH HOH . D 4 HOH A 24 424 29 HOH HOH . D 4 HOH A 25 425 30 HOH HOH . D 4 HOH A 26 426 31 HOH HOH . D 4 HOH A 27 427 32 HOH HOH . D 4 HOH A 28 428 33 HOH HOH . D 4 HOH A 29 429 34 HOH HOH . D 4 HOH A 30 430 35 HOH HOH . D 4 HOH A 31 431 36 HOH HOH . D 4 HOH A 32 432 37 HOH HOH . D 4 HOH A 33 433 40 HOH HOH . D 4 HOH A 34 434 41 HOH HOH . D 4 HOH A 35 435 42 HOH HOH . D 4 HOH A 36 436 46 HOH HOH . D 4 HOH A 37 437 47 HOH HOH . D 4 HOH A 38 438 48 HOH HOH . D 4 HOH A 39 439 50 HOH HOH . D 4 HOH A 40 440 51 HOH HOH . D 4 HOH A 41 441 53 HOH HOH . D 4 HOH A 42 442 54 HOH HOH . D 4 HOH A 43 443 55 HOH HOH . D 4 HOH A 44 444 56 HOH HOH . D 4 HOH A 45 445 59 HOH HOH . D 4 HOH A 46 446 60 HOH HOH . D 4 HOH A 47 447 61 HOH HOH . D 4 HOH A 48 448 62 HOH HOH . D 4 HOH A 49 449 63 HOH HOH . D 4 HOH A 50 450 64 HOH HOH . D 4 HOH A 51 451 65 HOH HOH . D 4 HOH A 52 452 66 HOH HOH . D 4 HOH A 53 453 67 HOH HOH . D 4 HOH A 54 454 69 HOH HOH . D 4 HOH A 55 455 71 HOH HOH . D 4 HOH A 56 456 72 HOH HOH . D 4 HOH A 57 457 73 HOH HOH . D 4 HOH A 58 458 74 HOH HOH . D 4 HOH A 59 459 75 HOH HOH . D 4 HOH A 60 460 77 HOH HOH . D 4 HOH A 61 461 80 HOH HOH . D 4 HOH A 62 462 81 HOH HOH . D 4 HOH A 63 463 83 HOH HOH . D 4 HOH A 64 464 84 HOH HOH . D 4 HOH A 65 465 86 HOH HOH . D 4 HOH A 66 466 88 HOH HOH . D 4 HOH A 67 467 89 HOH HOH . D 4 HOH A 68 468 92 HOH HOH . D 4 HOH A 69 469 93 HOH HOH . D 4 HOH A 70 470 94 HOH HOH . D 4 HOH A 71 471 95 HOH HOH . D 4 HOH A 72 472 96 HOH HOH . D 4 HOH A 73 473 97 HOH HOH . D 4 HOH A 74 474 99 HOH HOH . D 4 HOH A 75 475 100 HOH HOH . D 4 HOH A 76 476 102 HOH HOH . D 4 HOH A 77 477 103 HOH HOH . D 4 HOH A 78 478 104 HOH HOH . D 4 HOH A 79 479 108 HOH HOH . D 4 HOH A 80 480 110 HOH HOH . D 4 HOH A 81 481 111 HOH HOH . D 4 HOH A 82 482 113 HOH HOH . D 4 HOH A 83 483 115 HOH HOH . D 4 HOH A 84 484 116 HOH HOH . D 4 HOH A 85 485 117 HOH HOH . D 4 HOH A 86 486 118 HOH HOH . D 4 HOH A 87 487 119 HOH HOH . D 4 HOH A 88 488 120 HOH HOH . D 4 HOH A 89 489 121 HOH HOH . D 4 HOH A 90 490 123 HOH HOH . D 4 HOH A 91 491 124 HOH HOH . D 4 HOH A 92 492 125 HOH HOH . D 4 HOH A 93 493 126 HOH HOH . D 4 HOH A 94 494 128 HOH HOH . D 4 HOH A 95 495 130 HOH HOH . D 4 HOH A 96 496 131 HOH HOH . D 4 HOH A 97 497 133 HOH HOH . D 4 HOH A 98 498 137 HOH HOH . D 4 HOH A 99 499 142 HOH HOH . D 4 HOH A 100 500 143 HOH HOH . D 4 HOH A 101 501 144 HOH HOH . D 4 HOH A 102 502 145 HOH HOH . D 4 HOH A 103 503 147 HOH HOH . D 4 HOH A 104 504 148 HOH HOH . D 4 HOH A 105 505 149 HOH HOH . D 4 HOH A 106 506 153 HOH HOH . D 4 HOH A 107 507 154 HOH HOH . D 4 HOH A 108 508 156 HOH HOH . D 4 HOH A 109 509 157 HOH HOH . D 4 HOH A 110 510 158 HOH HOH . D 4 HOH A 111 511 166 HOH HOH . D 4 HOH A 112 512 167 HOH HOH . D 4 HOH A 113 513 170 HOH HOH . D 4 HOH A 114 514 172 HOH HOH . D 4 HOH A 115 515 175 HOH HOH . D 4 HOH A 116 516 176 HOH HOH . D 4 HOH A 117 517 177 HOH HOH . D 4 HOH A 118 518 179 HOH HOH . D 4 HOH A 119 519 180 HOH HOH . D 4 HOH A 120 520 181 HOH HOH . D 4 HOH A 121 521 182 HOH HOH . D 4 HOH A 122 522 184 HOH HOH . D 4 HOH A 123 523 186 HOH HOH . D 4 HOH A 124 524 188 HOH HOH . D 4 HOH A 125 525 192 HOH HOH . D 4 HOH A 126 526 193 HOH HOH . D 4 HOH A 127 527 196 HOH HOH . D 4 HOH A 128 528 197 HOH HOH . D 4 HOH A 129 529 200 HOH HOH . D 4 HOH A 130 530 201 HOH HOH . D 4 HOH A 131 531 202 HOH HOH . D 4 HOH A 132 532 204 HOH HOH . D 4 HOH A 133 533 205 HOH HOH . D 4 HOH A 134 534 206 HOH HOH . D 4 HOH A 135 535 209 HOH HOH . D 4 HOH A 136 536 211 HOH HOH . D 4 HOH A 137 537 213 HOH HOH . D 4 HOH A 138 538 214 HOH HOH . D 4 HOH A 139 539 222 HOH HOH . D 4 HOH A 140 540 225 HOH HOH . D 4 HOH A 141 541 227 HOH HOH . D 4 HOH A 142 542 229 HOH HOH . D 4 HOH A 143 543 233 HOH HOH . D 4 HOH A 144 544 236 HOH HOH . D 4 HOH A 145 545 239 HOH HOH . D 4 HOH A 146 546 242 HOH HOH . D 4 HOH A 147 547 248 HOH HOH . D 4 HOH A 148 548 249 HOH HOH . D 4 HOH A 149 549 253 HOH HOH . D 4 HOH A 150 550 259 HOH HOH . D 4 HOH A 151 551 260 HOH HOH . D 4 HOH A 152 552 263 HOH HOH . D 4 HOH A 153 553 265 HOH HOH . D 4 HOH A 154 554 266 HOH HOH . D 4 HOH A 155 555 272 HOH HOH . D 4 HOH A 156 556 274 HOH HOH . D 4 HOH A 157 557 276 HOH HOH . D 4 HOH A 158 558 286 HOH HOH . D 4 HOH A 159 559 289 HOH HOH . D 4 HOH A 160 560 291 HOH HOH . D 4 HOH A 161 561 292 HOH HOH . D 4 HOH A 162 562 293 HOH HOH . D 4 HOH A 163 563 298 HOH HOH . D 4 HOH A 164 564 299 HOH HOH . D 4 HOH A 165 565 303 HOH HOH . D 4 HOH A 166 566 326 HOH HOH . D 4 HOH A 167 567 339 HOH HOH . D 4 HOH A 168 568 341 HOH HOH . D 4 HOH A 169 569 351 HOH HOH . D 4 HOH A 170 570 353 HOH HOH . D 4 HOH A 171 571 356 HOH HOH . D 4 HOH A 172 572 357 HOH HOH . D 4 HOH A 173 573 358 HOH HOH . D 4 HOH A 174 574 359 HOH HOH . D 4 HOH A 175 575 360 HOH HOH . D 4 HOH A 176 576 361 HOH HOH . D 4 HOH A 177 577 362 HOH HOH . D 4 HOH A 178 578 363 HOH HOH . D 4 HOH A 179 579 364 HOH HOH . D 4 HOH A 180 580 365 HOH HOH . D 4 HOH A 181 581 369 HOH HOH . D 4 HOH A 182 582 370 HOH HOH . D 4 HOH A 183 583 371 HOH HOH . D 4 HOH A 184 584 372 HOH HOH . D 4 HOH A 185 585 373 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 15.872 -2.494 -12.046 1 15.06 ? C1 GOL 302 A 1 HETATM 2 O O1 GOL . . . C 3 16.818 -1.523 -12.445 1 15.21 ? O1 GOL 302 A 1 HETATM 3 C C2 GOL . . . C 3 16.142 -3.819 -12.751 1 15.94 ? C2 GOL 302 A 1 HETATM 4 O O2 GOL . . . C 3 15.931 -3.667 -14.135 1 17.48 ? O2 GOL 302 A 1 HETATM 5 C C3 GOL . . . C 3 15.222 -4.901 -12.193 1 16.52 ? C3 GOL 302 A 1 HETATM 6 O O3 GOL . . . C 3 15.512 -6.135 -12.812 1 19.98 ? O3 GOL 302 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 6 #