data_4NIZ # _model_server_result.job_id t-eGRnmFJhFpRLpdUj_FVA _model_server_result.datetime_utc '2024-10-12 14:29:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4niz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":101}' # _entry.id 4NIZ # _exptl.entry_id 4NIZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.32 _cell.angle_gamma 90 _cell.entry_id 4NIZ _cell.length_a 82.263 _cell.length_b 30.14 _cell.length_c 27.845 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4NIZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ACE 1 A ACE 0 1_555 A N ARG 2 A ARG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C LYS 9 A LYS 8 1_555 A N ABA 10 A ABA 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale3 A C ABA 10 A ABA 9 1_555 A N GLU 11 A GLU 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 B C ACE 1 B ACE 0 1_555 B N ARG 2 B ARG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale5 B C LYS 9 B LYS 8 1_555 B N ABA 10 B ABA 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale6 B C ABA 10 B ABA 9 1_555 B N GLU 11 B GLU 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 137 n n C1 C2 GOL sing 138 n n C1 H11 GOL sing 139 n n C1 H12 GOL sing 140 n n O1 HO1 GOL sing 141 n n C2 O2 GOL sing 142 n n C2 C3 GOL sing 143 n n C2 H2 GOL sing 144 n n O2 HO2 GOL sing 145 n n C3 O3 GOL sing 146 n n C3 H31 GOL sing 147 n n C3 H32 GOL sing 148 n n O3 HO3 GOL sing 149 n n # _atom_sites.entry_id 4NIZ _atom_sites.fract_transf_matrix[1][1] 0.012156 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002434 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.033178 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.036626 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL B 1 101 1 GOL GOL . D 3 HOH A 1 101 4 HOH HOH . D 3 HOH A 2 102 8 HOH HOH . D 3 HOH A 3 103 10 HOH HOH . D 3 HOH A 4 104 11 HOH HOH . D 3 HOH A 5 105 12 HOH HOH . D 3 HOH A 6 106 13 HOH HOH . D 3 HOH A 7 107 18 HOH HOH . D 3 HOH A 8 108 22 HOH HOH . D 3 HOH A 9 109 24 HOH HOH . D 3 HOH A 10 110 30 HOH HOH . D 3 HOH A 11 111 31 HOH HOH . D 3 HOH A 12 112 32 HOH HOH . D 3 HOH A 13 113 36 HOH HOH . D 3 HOH A 14 114 40 HOH HOH . D 3 HOH A 15 115 47 HOH HOH . D 3 HOH A 16 116 49 HOH HOH . D 3 HOH A 17 117 57 HOH HOH . D 3 HOH A 18 118 63 HOH HOH . D 3 HOH A 19 119 71 HOH HOH . D 3 HOH A 20 120 72 HOH HOH . D 3 HOH A 21 121 73 HOH HOH . D 3 HOH A 22 122 76 HOH HOH . E 3 HOH B 1 201 2 HOH HOH . E 3 HOH B 2 202 3 HOH HOH . E 3 HOH B 3 203 5 HOH HOH . E 3 HOH B 4 204 6 HOH HOH . E 3 HOH B 5 205 7 HOH HOH . E 3 HOH B 6 206 9 HOH HOH . E 3 HOH B 7 207 14 HOH HOH . E 3 HOH B 8 208 17 HOH HOH . E 3 HOH B 9 209 20 HOH HOH . E 3 HOH B 10 210 21 HOH HOH . E 3 HOH B 11 211 23 HOH HOH . E 3 HOH B 12 212 25 HOH HOH . E 3 HOH B 13 213 26 HOH HOH . E 3 HOH B 14 214 27 HOH HOH . E 3 HOH B 15 215 29 HOH HOH . E 3 HOH B 16 216 33 HOH HOH . E 3 HOH B 17 217 37 HOH HOH . E 3 HOH B 18 218 41 HOH HOH . E 3 HOH B 19 219 45 HOH HOH . E 3 HOH B 20 220 51 HOH HOH . E 3 HOH B 21 221 54 HOH HOH . E 3 HOH B 22 222 55 HOH HOH . E 3 HOH B 23 223 62 HOH HOH . E 3 HOH B 24 224 65 HOH HOH . E 3 HOH B 25 225 69 HOH HOH . E 3 HOH B 26 226 74 HOH HOH . E 3 HOH B 27 227 75 HOH HOH . E 3 HOH B 28 228 77 HOH HOH . E 3 HOH B 29 229 81 HOH HOH . E 3 HOH B 30 230 82 HOH HOH . E 3 HOH B 31 231 83 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 2 16.885 -11.651 -7.209 1 32.38 ? C1 GOL 101 B 1 HETATM 2 O O1 GOL . . . C 2 15.852 -10.907 -7.823 1 26.54 ? O1 GOL 101 B 1 HETATM 3 C C2 GOL . . . C 2 18.223 -11.309 -7.855 1 46.24 ? C2 GOL 101 B 1 HETATM 4 O O2 GOL . . . C 2 18.408 -12.067 -9.031 1 37.62 ? O2 GOL 101 B 1 HETATM 5 C C3 GOL . . . C 2 19.387 -11.524 -6.893 1 39.43 ? C3 GOL 101 B 1 HETATM 6 O O3 GOL . . . C 2 19.572 -12.903 -6.66 1 44.42 ? O3 GOL 101 B 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #