data_4NJA # _model_server_result.job_id eJ2T-WKi1g0cVZ63smP64w _model_server_result.datetime_utc '2024-12-26 14:39:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4nja # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":501}' # _entry.id 4NJA # _exptl.entry_id 4NJA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 472.466 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '8-methoxypyrene-1,3,6-trisulfonic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4NJA _cell.length_a 92.66 _cell.length_b 127.837 _cell.length_c 47.785 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4NJA _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 L CYS 23 1_555 A SG CYS 92 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? disulf ? disulf2 A SG CYS 138 L CYS 134 1_555 A SG CYS 198 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? disulf ? disulf3 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? disulf ? disulf4 B SG CYS 148 H CYS 142 1_555 B SG CYS 203 H CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc1 A OE1 GLU 27 L GLU 27 1_555 C ZN ZN . L ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? metalc ? metalc2 A OE1 GLU 97 L GLU 93 1_555 C ZN ZN . L ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc3 A OD1 ASN 142 L ASN 138 1_555 H ZN ZN . H ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc4 B NE2 HIS 172 H HIS 172 1_555 H ZN ZN . H ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? # _chem_comp.formula 'C17 H12 O10 S3' _chem_comp.formula_weight 472.466 _chem_comp.id 2M9 _chem_comp.mon_nstd_flag . _chem_comp.name '8-methoxypyrene-1,3,6-trisulfonic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAA SBC 2M9 doub 1 n n OAD SBD 2M9 doub 2 n n OAB SBC 2M9 doub 3 n n SBC OAI 2M9 sing 4 n n SBC CAS 2M9 sing 5 n n CAM CAS 2M9 doub 6 n y CAM CAT 2M9 sing 7 n y OAC SBD 2M9 doub 8 n n SBD CAT 2M9 sing 9 n n SBD OAJ 2M9 sing 10 n n CAS CAW 2M9 sing 11 n y CAT CAX 2M9 doub 12 n y CAW CAO 2M9 doub 13 n y CAW CBA 2M9 sing 14 n y CAO CAP 2M9 sing 15 n y CAX CBA 2M9 sing 16 n y CAX CAQ 2M9 sing 17 n y CBA CBB 2M9 doub 18 n y CAQ CAR 2M9 doub 19 n y CAP CAY 2M9 doub 20 n y CBB CAY 2M9 sing 21 n y CBB CAZ 2M9 sing 22 n y CAR CAZ 2M9 sing 23 n y CAY CAU 2M9 sing 24 n y CAZ CAV 2M9 doub 25 n y OAE SBE 2M9 doub 26 n n CAU SBE 2M9 sing 27 n n CAU CAN 2M9 doub 28 n y CAV CAN 2M9 sing 29 n y CAV OBF 2M9 sing 30 n n SBE OAK 2M9 doub 31 n n SBE OAF 2M9 sing 32 n n OBF CAG 2M9 sing 33 n n CAM H1 2M9 sing 34 n n CAO H2 2M9 sing 35 n n CAP H3 2M9 sing 36 n n CAQ H4 2M9 sing 37 n n CAR H5 2M9 sing 38 n n CAG H6 2M9 sing 39 n n CAG H7 2M9 sing 40 n n CAG H8 2M9 sing 41 n n CAN H9 2M9 sing 42 n n OAJ H10 2M9 sing 43 n n OAI H11 2M9 sing 44 n n OAF H12 2M9 sing 45 n n # _atom_sites.entry_id 4NJA _atom_sites.fract_transf_matrix[1][1] 0.010792 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007822 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020927 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN L 1 301 2 ZN ZN . D 4 ACT L 1 302 1 ACT ACT . E 4 ACT L 1 303 2 ACT ACT . F 5 2M9 H 1 501 501 2M9 2M9 . G 6 PO4 H 1 502 1 PO4 PO4 . H 3 ZN H 1 503 1 ZN ZN . I 7 HOH L 1 401 3 HOH HOH . I 7 HOH L 2 402 5 HOH HOH . I 7 HOH L 3 403 6 HOH HOH . I 7 HOH L 4 404 7 HOH HOH . I 7 HOH L 5 405 9 HOH HOH . I 7 HOH L 6 406 10 HOH HOH . I 7 HOH L 7 407 11 HOH HOH . I 7 HOH L 8 408 13 HOH HOH . I 7 HOH L 9 409 15 HOH HOH . I 7 HOH L 10 410 16 HOH HOH . I 7 HOH L 11 411 18 HOH HOH . I 7 HOH L 12 412 20 HOH HOH . I 7 HOH L 13 413 21 HOH HOH . I 7 HOH L 14 414 23 HOH HOH . I 7 HOH L 15 415 25 HOH HOH . I 7 HOH L 16 416 26 HOH HOH . I 7 HOH L 17 417 27 HOH HOH . I 7 HOH L 18 418 28 HOH HOH . I 7 HOH L 19 419 29 HOH HOH . I 7 HOH L 20 420 31 HOH HOH . I 7 HOH L 21 421 33 HOH HOH . I 7 HOH L 22 422 34 HOH HOH . I 7 HOH L 23 423 35 HOH HOH . I 7 HOH L 24 424 38 HOH HOH . I 7 HOH L 25 425 39 HOH HOH . I 7 HOH L 26 426 42 HOH HOH . I 7 HOH L 27 427 43 HOH HOH . I 7 HOH L 28 428 44 HOH HOH . I 7 HOH L 29 429 48 HOH HOH . I 7 HOH L 30 430 50 HOH HOH . I 7 HOH L 31 431 51 HOH HOH . I 7 HOH L 32 432 52 HOH HOH . I 7 HOH L 33 433 53 HOH HOH . I 7 HOH L 34 434 55 HOH HOH . I 7 HOH L 35 435 56 HOH HOH . I 7 HOH L 36 436 57 HOH HOH . I 7 HOH L 37 437 59 HOH HOH . I 7 HOH L 38 438 60 HOH HOH . I 7 HOH L 39 439 61 HOH HOH . I 7 HOH L 40 440 62 HOH HOH . I 7 HOH L 41 441 64 HOH HOH . I 7 HOH L 42 442 65 HOH HOH . I 7 HOH L 43 443 66 HOH HOH . I 7 HOH L 44 444 67 HOH HOH . I 7 HOH L 45 445 70 HOH HOH . I 7 HOH L 46 446 72 HOH HOH . I 7 HOH L 47 447 78 HOH HOH . I 7 HOH L 48 448 79 HOH HOH . I 7 HOH L 49 449 82 HOH HOH . I 7 HOH L 50 450 84 HOH HOH . I 7 HOH L 51 451 85 HOH HOH . I 7 HOH L 52 452 86 HOH HOH . I 7 HOH L 53 453 88 HOH HOH . I 7 HOH L 54 454 89 HOH HOH . I 7 HOH L 55 455 90 HOH HOH . I 7 HOH L 56 456 91 HOH HOH . I 7 HOH L 57 457 95 HOH HOH . I 7 HOH L 58 458 96 HOH HOH . I 7 HOH L 59 459 97 HOH HOH . I 7 HOH L 60 460 98 HOH HOH . I 7 HOH L 61 461 99 HOH HOH . I 7 HOH L 62 462 101 HOH HOH . I 7 HOH L 63 463 103 HOH HOH . I 7 HOH L 64 464 104 HOH HOH . I 7 HOH L 65 465 105 HOH HOH . I 7 HOH L 66 466 107 HOH HOH . I 7 HOH L 67 467 108 HOH HOH . I 7 HOH L 68 468 113 HOH HOH . I 7 HOH L 69 469 114 HOH HOH . I 7 HOH L 70 470 117 HOH HOH . I 7 HOH L 71 471 119 HOH HOH . I 7 HOH L 72 472 120 HOH HOH . I 7 HOH L 73 473 121 HOH HOH . I 7 HOH L 74 474 124 HOH HOH . I 7 HOH L 75 475 125 HOH HOH . I 7 HOH L 76 476 127 HOH HOH . I 7 HOH L 77 477 128 HOH HOH . I 7 HOH L 78 478 129 HOH HOH . I 7 HOH L 79 479 131 HOH HOH . I 7 HOH L 80 480 132 HOH HOH . I 7 HOH L 81 481 134 HOH HOH . I 7 HOH L 82 482 136 HOH HOH . J 7 HOH H 1 601 1 HOH HOH . J 7 HOH H 2 602 2 HOH HOH . J 7 HOH H 3 603 4 HOH HOH . J 7 HOH H 4 604 8 HOH HOH . J 7 HOH H 5 605 12 HOH HOH . J 7 HOH H 6 606 14 HOH HOH . J 7 HOH H 7 607 17 HOH HOH . J 7 HOH H 8 608 19 HOH HOH . J 7 HOH H 9 609 22 HOH HOH . J 7 HOH H 10 610 24 HOH HOH . J 7 HOH H 11 611 30 HOH HOH . J 7 HOH H 12 612 32 HOH HOH . J 7 HOH H 13 613 36 HOH HOH . J 7 HOH H 14 614 37 HOH HOH . J 7 HOH H 15 615 40 HOH HOH . J 7 HOH H 16 616 41 HOH HOH . J 7 HOH H 17 617 45 HOH HOH . J 7 HOH H 18 618 46 HOH HOH . J 7 HOH H 19 619 47 HOH HOH . J 7 HOH H 20 620 49 HOH HOH . J 7 HOH H 21 621 54 HOH HOH . J 7 HOH H 22 622 58 HOH HOH . J 7 HOH H 23 623 63 HOH HOH . J 7 HOH H 24 624 68 HOH HOH . J 7 HOH H 25 625 69 HOH HOH . J 7 HOH H 26 626 71 HOH HOH . J 7 HOH H 27 627 73 HOH HOH . J 7 HOH H 28 628 74 HOH HOH . J 7 HOH H 29 629 75 HOH HOH . J 7 HOH H 30 630 76 HOH HOH . J 7 HOH H 31 631 77 HOH HOH . J 7 HOH H 32 632 80 HOH HOH . J 7 HOH H 33 633 81 HOH HOH . J 7 HOH H 34 634 83 HOH HOH . J 7 HOH H 35 635 87 HOH HOH . J 7 HOH H 36 636 92 HOH HOH . J 7 HOH H 37 637 93 HOH HOH . J 7 HOH H 38 638 94 HOH HOH . J 7 HOH H 39 639 100 HOH HOH . J 7 HOH H 40 640 102 HOH HOH . J 7 HOH H 41 641 106 HOH HOH . J 7 HOH H 42 642 109 HOH HOH . J 7 HOH H 43 643 110 HOH HOH . J 7 HOH H 44 644 111 HOH HOH . J 7 HOH H 45 645 112 HOH HOH . J 7 HOH H 46 646 115 HOH HOH . J 7 HOH H 47 647 116 HOH HOH . J 7 HOH H 48 648 118 HOH HOH . J 7 HOH H 49 649 122 HOH HOH . J 7 HOH H 50 650 123 HOH HOH . J 7 HOH H 51 651 126 HOH HOH . J 7 HOH H 52 652 130 HOH HOH . J 7 HOH H 53 653 133 HOH HOH . J 7 HOH H 54 654 135 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAJ 2M9 . . . F 5 -30.5 -18.931 14.104 1 37.7 ? OAJ 2M9 501 H 1 HETATM 2 S SBD 2M9 . . . F 5 -31.014 -17.557 13.724 1 36.68 ? SBD 2M9 501 H 1 HETATM 3 O OAC 2M9 . . . F 5 -31.795 -17.701 12.475 1 36.84 ? OAC 2M9 501 H 1 HETATM 4 O OAD 2M9 . . . F 5 -29.753 -16.76 13.562 1 29.66 ? OAD 2M9 501 H 1 HETATM 5 C CAT 2M9 . . . F 5 -31.972 -16.947 14.879 1 31.28 ? CAT 2M9 501 H 1 HETATM 6 C CAM 2M9 . . . F 5 -31.624 -15.811 15.601 1 29.52 ? CAM 2M9 501 H 1 HETATM 7 C CAS 2M9 . . . F 5 -32.455 -15.271 16.602 1 33.77 ? CAS 2M9 501 H 1 HETATM 8 S SBC 2M9 . . . F 5 -31.998 -13.942 17.43 1 31.96 ? SBC 2M9 501 H 1 HETATM 9 O OAA 2M9 . . . F 5 -30.612 -13.637 17.146 1 26.05 ? OAA 2M9 501 H 1 HETATM 10 O OAB 2M9 . . . F 5 -32.993 -12.897 17.129 1 33.36 ? OAB 2M9 501 H 1 HETATM 11 O OAI 2M9 . . . F 5 -32.085 -14.11 18.853 1 37.68 ? OAI 2M9 501 H 1 HETATM 12 C CAW 2M9 . . . F 5 -33.693 -15.902 16.856 1 34.29 ? CAW 2M9 501 H 1 HETATM 13 C CAO 2M9 . . . F 5 -34.559 -15.416 17.864 1 34.1 ? CAO 2M9 501 H 1 HETATM 14 C CAP 2M9 . . . F 5 -35.772 -16.033 18.156 1 31.7 ? CAP 2M9 501 H 1 HETATM 15 C CAX 2M9 . . . F 5 -33.176 -17.565 15.154 1 32.08 ? CAX 2M9 501 H 1 HETATM 16 C CBA 2M9 . . . F 5 -34.041 -17.058 16.144 1 30.63 ? CBA 2M9 501 H 1 HETATM 17 C CBB 2M9 . . . F 5 -35.255 -17.685 16.427 1 33.73 ? CBB 2M9 501 H 1 HETATM 18 C CAY 2M9 . . . F 5 -36.12 -17.184 17.439 1 36.6 ? CAY 2M9 501 H 1 HETATM 19 C CAQ 2M9 . . . F 5 -33.534 -18.693 14.409 1 31.44 ? CAQ 2M9 501 H 1 HETATM 20 C CAR 2M9 . . . F 5 -34.786 -19.299 14.674 1 31.5 ? CAR 2M9 501 H 1 HETATM 21 C CAZ 2M9 . . . F 5 -35.623 -18.829 15.69 1 35.45 ? CAZ 2M9 501 H 1 HETATM 22 C CAV 2M9 . . . F 5 -36.849 -19.479 15.97 1 38.63 ? CAV 2M9 501 H 1 HETATM 23 O OBF 2M9 . . . F 5 -37.233 -20.629 15.295 1 42.36 ? OBF 2M9 501 H 1 HETATM 24 C CAG 2M9 . . . F 5 -38.573 -21.138 15.374 1 43.58 ? CAG 2M9 501 H 1 HETATM 25 C CAN 2M9 . . . F 5 -37.691 -18.974 16.969 1 40.51 ? CAN 2M9 501 H 1 HETATM 26 C CAU 2M9 . . . F 5 -37.349 -17.829 17.71 1 41.32 ? CAU 2M9 501 H 1 HETATM 27 S SBE 2M9 . . . F 5 -38.395 -17.366 18.889 1 47.2 ? SBE 2M9 501 H 1 HETATM 28 O OAK 2M9 . . . F 5 -37.732 -17.507 20.207 1 45.84 ? OAK 2M9 501 H 1 HETATM 29 O OAE 2M9 . . . F 5 -38.837 -15.941 18.826 1 46.28 ? OAE 2M9 501 H 1 HETATM 30 O OAF 2M9 . . . F 5 -39.512 -18.378 18.907 1 48.1 ? OAF 2M9 501 H 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 370 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 30 #