data_4NJE # _model_server_result.job_id hV_qu-gTi-MvYE6YKSob-g _model_server_result.datetime_utc '2025-01-10 22:13:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4nje # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 4NJE # _exptl.entry_id 4NJE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 133.103 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ASPARTIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4NJE _cell.length_a 91.59 _cell.length_b 91.59 _cell.length_c 188.77 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4NJE _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 61 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 39 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 64 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 42 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.814 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C4 H7 N O4' _chem_comp.formula_weight 133.103 _chem_comp.id ASP _chem_comp.mon_nstd_flag y _chem_comp.name 'ASPARTIC ACID' _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA ASP sing 55 n n N H ASP sing 56 n n N H2 ASP sing 57 n n CA C ASP sing 58 n n CA CB ASP sing 59 n n CA HA ASP sing 60 n n C O ASP doub 61 n n C OXT ASP sing 62 n n CB CG ASP sing 63 n n CB HB2 ASP sing 64 n n CB HB3 ASP sing 65 n n CG OD1 ASP doub 66 n n CG OD2 ASP sing 67 n n OD2 HD2 ASP sing 68 n n OXT HXT ASP sing 69 n n # _atom_sites.entry_id 4NJE _atom_sites.fract_transf_matrix[1][1] 0.010918 _atom_sites.fract_transf_matrix[1][2] 0.006304 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012607 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005297 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ASP A 1 201 1 ASP ASP . D 4 HOH A 1 301 1 HOH HOH . D 4 HOH A 2 302 2 HOH HOH . D 4 HOH A 3 303 3 HOH HOH . D 4 HOH A 4 304 4 HOH HOH . D 4 HOH A 5 305 5 HOH HOH . D 4 HOH A 6 306 7 HOH HOH . D 4 HOH A 7 307 8 HOH HOH . D 4 HOH A 8 308 9 HOH HOH . D 4 HOH A 9 309 10 HOH HOH . D 4 HOH A 10 310 11 HOH HOH . D 4 HOH A 11 311 15 HOH HOH . D 4 HOH A 12 312 16 HOH HOH . D 4 HOH A 13 313 17 HOH HOH . D 4 HOH A 14 314 20 HOH HOH . D 4 HOH A 15 315 22 HOH HOH . D 4 HOH A 16 316 23 HOH HOH . D 4 HOH A 17 317 25 HOH HOH . D 4 HOH A 18 318 27 HOH HOH . D 4 HOH A 19 319 30 HOH HOH . D 4 HOH A 20 320 34 HOH HOH . D 4 HOH A 21 321 36 HOH HOH . D 4 HOH A 22 322 40 HOH HOH . D 4 HOH A 23 323 42 HOH HOH . D 4 HOH A 24 324 47 HOH HOH . D 4 HOH A 25 325 50 HOH HOH . D 4 HOH A 26 326 51 HOH HOH . D 4 HOH A 27 327 54 HOH HOH . D 4 HOH A 28 328 57 HOH HOH . D 4 HOH A 29 329 64 HOH HOH . D 4 HOH A 30 330 66 HOH HOH . D 4 HOH A 31 331 68 HOH HOH . D 4 HOH A 32 332 70 HOH HOH . D 4 HOH A 33 333 71 HOH HOH . D 4 HOH A 34 334 73 HOH HOH . E 4 HOH B 1 401 6 HOH HOH . E 4 HOH B 2 402 12 HOH HOH . E 4 HOH B 3 403 13 HOH HOH . E 4 HOH B 4 404 14 HOH HOH . E 4 HOH B 5 405 24 HOH HOH . E 4 HOH B 6 406 32 HOH HOH . E 4 HOH B 7 407 39 HOH HOH . E 4 HOH B 8 408 52 HOH HOH . E 4 HOH B 9 409 53 HOH HOH . E 4 HOH B 10 410 56 HOH HOH . E 4 HOH B 11 411 65 HOH HOH . E 4 HOH B 12 412 67 HOH HOH . E 4 HOH B 13 413 75 HOH HOH . E 4 HOH B 14 414 78 HOH HOH . E 4 HOH B 15 415 79 HOH HOH . E 4 HOH B 16 416 80 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N ASP . . . C 3 54.031 29.991 188.076 1 37.54 ? N ASP 201 A 1 HETATM 2 C CA ASP . . . C 3 54.552 28.848 187.319 1 41.51 ? CA ASP 201 A 1 HETATM 3 C C ASP . . . C 3 53.431 27.92 186.831 1 39.57 ? C ASP 201 A 1 HETATM 4 O O ASP . . . C 3 52.995 27.942 185.672 1 37.66 ? O ASP 201 A 1 HETATM 5 C CB ASP . . . C 3 55.535 28.063 188.193 1 37.82 ? CB ASP 201 A 1 HETATM 6 C CG ASP . . . C 3 56.187 26.876 187.47 1 39.28 ? CG ASP 201 A 1 HETATM 7 O OD1 ASP . . . C 3 55.65 26.32 186.479 1 33.76 ? OD1 ASP 201 A 1 HETATM 8 O OD2 ASP . . . C 3 57.286 26.497 187.922 1 43.21 ? OD2 ASP 201 A 1 HETATM 9 O OXT ASP . . . C 3 52.964 27.09 187.615 1 38.02 ? OXT ASP 201 A 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 351 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 9 #