data_4NJG # _model_server_result.job_id VyXlVtghsr_-Lnwygio-bg _model_server_result.datetime_utc '2024-11-14 20:49:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4njg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":301}' # _entry.id 4NJG # _exptl.entry_id 4NJG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 351.64 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IRON/SULFUR CLUSTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4NJG _cell.length_a 118.956 _cell.length_b 118.956 _cell.length_c 101.952 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4NJG _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 51 A CYS 31 1_555 C FE4 SF4 . A SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc2 A SG CYS 66 A CYS 46 1_555 C FE1 SF4 . A SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc3 A SG CYS 69 A CYS 49 1_555 C FE2 SF4 . A SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc4 C FE3 SF4 . A SF4 301 1_555 D O SAM . A SAM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc5 C FE3 SF4 . A SF4 301 1_555 D N SAM . A SAM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc6 B SG CYS 51 B CYS 31 1_555 F FE4 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc7 B SG CYS 66 B CYS 46 1_555 F FE1 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc8 B SG CYS 69 B CYS 49 1_555 F FE2 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc9 F FE3 SF4 . B SF4 301 1_555 G N SAM . B SAM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc10 F FE3 SF4 . B SF4 301 1_555 G O SAM . B SAM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? # _chem_comp.formula 'Fe4 S4' _chem_comp.formula_weight 351.64 _chem_comp.id SF4 _chem_comp.mon_nstd_flag . _chem_comp.name 'IRON/SULFUR CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S2 SF4 sing 362 n n FE1 S3 SF4 sing 363 n n FE1 S4 SF4 sing 364 n n FE2 S1 SF4 sing 365 n n FE2 S3 SF4 sing 366 n n FE2 S4 SF4 sing 367 n n FE3 S1 SF4 sing 368 n n FE3 S2 SF4 sing 369 n n FE3 S4 SF4 sing 370 n n FE4 S1 SF4 sing 371 n n FE4 S2 SF4 sing 372 n n FE4 S3 SF4 sing 373 n n # _atom_sites.entry_id 4NJG _atom_sites.fract_transf_matrix[1][1] 0.008406 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008406 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009809 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SF4 A 1 301 240 SF4 SF4 . D 3 SAM A 1 302 241 SAM SAM . E 4 HHS A 1 303 242 HHS HHS . F 2 SF4 B 1 301 240 SF4 SF4 . G 3 SAM B 1 302 241 SAM SAM . H 4 HHS B 1 303 242 HHS HHS . I 5 HOH A 1 401 2 HOH HOH . I 5 HOH A 2 402 3 HOH HOH . I 5 HOH A 3 403 4 HOH HOH . I 5 HOH A 4 404 5 HOH HOH . I 5 HOH A 5 405 9 HOH HOH . I 5 HOH A 6 406 11 HOH HOH . I 5 HOH A 7 407 14 HOH HOH . I 5 HOH A 8 408 16 HOH HOH . I 5 HOH A 9 409 20 HOH HOH . I 5 HOH A 10 410 21 HOH HOH . I 5 HOH A 11 411 24 HOH HOH . I 5 HOH A 12 412 25 HOH HOH . I 5 HOH A 13 413 26 HOH HOH . I 5 HOH A 14 414 27 HOH HOH . I 5 HOH A 15 415 28 HOH HOH . I 5 HOH A 16 416 30 HOH HOH . I 5 HOH A 17 417 33 HOH HOH . I 5 HOH A 18 418 35 HOH HOH . I 5 HOH A 19 419 37 HOH HOH . I 5 HOH A 20 420 39 HOH HOH . I 5 HOH A 21 421 40 HOH HOH . I 5 HOH A 22 422 41 HOH HOH . I 5 HOH A 23 423 42 HOH HOH . I 5 HOH A 24 424 44 HOH HOH . I 5 HOH A 25 425 47 HOH HOH . I 5 HOH A 26 426 48 HOH HOH . I 5 HOH A 27 427 49 HOH HOH . I 5 HOH A 28 428 51 HOH HOH . I 5 HOH A 29 429 52 HOH HOH . I 5 HOH A 30 430 53 HOH HOH . I 5 HOH A 31 431 55 HOH HOH . I 5 HOH A 32 432 57 HOH HOH . I 5 HOH A 33 433 59 HOH HOH . I 5 HOH A 34 434 60 HOH HOH . I 5 HOH A 35 435 62 HOH HOH . I 5 HOH A 36 436 66 HOH HOH . I 5 HOH A 37 437 68 HOH HOH . I 5 HOH A 38 438 69 HOH HOH . I 5 HOH A 39 439 71 HOH HOH . I 5 HOH A 40 440 74 HOH HOH . I 5 HOH A 41 441 75 HOH HOH . I 5 HOH A 42 442 78 HOH HOH . I 5 HOH A 43 443 79 HOH HOH . I 5 HOH A 44 444 80 HOH HOH . I 5 HOH A 45 445 83 HOH HOH . I 5 HOH A 46 446 84 HOH HOH . I 5 HOH A 47 447 85 HOH HOH . I 5 HOH A 48 448 86 HOH HOH . I 5 HOH A 49 449 87 HOH HOH . I 5 HOH A 50 450 88 HOH HOH . I 5 HOH A 51 451 89 HOH HOH . I 5 HOH A 52 452 90 HOH HOH . I 5 HOH A 53 453 91 HOH HOH . I 5 HOH A 54 454 92 HOH HOH . I 5 HOH A 55 455 93 HOH HOH . I 5 HOH A 56 456 100 HOH HOH . J 5 HOH B 1 401 1 HOH HOH . J 5 HOH B 2 402 6 HOH HOH . J 5 HOH B 3 403 7 HOH HOH . J 5 HOH B 4 404 8 HOH HOH . J 5 HOH B 5 405 10 HOH HOH . J 5 HOH B 6 406 12 HOH HOH . J 5 HOH B 7 407 13 HOH HOH . J 5 HOH B 8 408 15 HOH HOH . J 5 HOH B 9 409 17 HOH HOH . J 5 HOH B 10 410 18 HOH HOH . J 5 HOH B 11 411 19 HOH HOH . J 5 HOH B 12 412 22 HOH HOH . J 5 HOH B 13 413 23 HOH HOH . J 5 HOH B 14 414 29 HOH HOH . J 5 HOH B 15 415 31 HOH HOH . J 5 HOH B 16 416 32 HOH HOH . J 5 HOH B 17 417 34 HOH HOH . J 5 HOH B 18 418 36 HOH HOH . J 5 HOH B 19 419 38 HOH HOH . J 5 HOH B 20 420 43 HOH HOH . J 5 HOH B 21 421 45 HOH HOH . J 5 HOH B 22 422 46 HOH HOH . J 5 HOH B 23 423 50 HOH HOH . J 5 HOH B 24 424 54 HOH HOH . J 5 HOH B 25 425 56 HOH HOH . J 5 HOH B 26 426 58 HOH HOH . J 5 HOH B 27 427 61 HOH HOH . J 5 HOH B 28 428 63 HOH HOH . J 5 HOH B 29 429 64 HOH HOH . J 5 HOH B 30 430 65 HOH HOH . J 5 HOH B 31 431 67 HOH HOH . J 5 HOH B 32 432 70 HOH HOH . J 5 HOH B 33 433 72 HOH HOH . J 5 HOH B 34 434 73 HOH HOH . J 5 HOH B 35 435 76 HOH HOH . J 5 HOH B 36 436 77 HOH HOH . J 5 HOH B 37 437 81 HOH HOH . J 5 HOH B 38 438 82 HOH HOH . J 5 HOH B 39 439 94 HOH HOH . J 5 HOH B 40 440 95 HOH HOH . J 5 HOH B 41 441 96 HOH HOH . J 5 HOH B 42 442 97 HOH HOH . J 5 HOH B 43 443 98 HOH HOH . J 5 HOH B 44 444 99 HOH HOH . J 5 HOH B 45 445 101 HOH HOH . J 5 HOH B 46 446 102 HOH HOH . J 5 HOH B 47 447 103 HOH HOH . J 5 HOH B 48 448 104 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 SF4 . . . F 2 21.679 80.568 10.113 1 42.58 ? FE1 SF4 301 B 1 HETATM 2 FE FE2 SF4 . . . F 2 20.265 79.537 7.999 1 44.33 ? FE2 SF4 301 B 1 HETATM 3 FE FE3 SF4 . . . F 2 19.896 82.148 8.751 1 45.31 ? FE3 SF4 301 B 1 HETATM 4 FE FE4 SF4 . . . F 2 22.243 81.382 7.561 1 45.08 ? FE4 SF4 301 B 1 HETATM 5 S S1 SF4 . . . F 2 20.161 81.355 6.627 1 43.68 ? S1 SF4 301 B 1 HETATM 6 S S2 SF4 . . . F 2 22.013 82.707 9.403 1 39.21 ? S2 SF4 301 B 1 HETATM 7 S S3 SF4 . . . F 2 22.496 79.285 8.412 1 45.55 ? S3 SF4 301 B 1 HETATM 8 S S4 SF4 . . . F 2 19.415 80.286 9.979 1 41.62 ? S4 SF4 301 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 369 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 8 #