data_4NJJ
#
_model_server_result.job_id            ZgKs8q8Gm_G_aZJ5aEueag 
_model_server_result.datetime_utc      '2024-11-24 20:01:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4njj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":302}' 
#
_entry.id    4NJJ 
#
_exptl.entry_id    4NJJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              398.437 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYLMETHIONINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4NJJ 
_cell.length_a            119.174 
_cell.length_b            119.174 
_cell.length_c            105.31 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4NJJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 51 A CYS 31 1_555 C FE4 SF4 . A SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? 
metalc ? metalc2 A SG CYS 66 A CYS 46 1_555 C FE1 SF4 . A SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? 
metalc ? metalc3 A SG CYS 69 A CYS 49 1_555 C FE2 SF4 . A SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? 
metalc ? metalc4 A OD2 ASP 72 A ASP 52 1_555 G MN MN . A MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.512 ? 
metalc ? metalc5 C FE3 SF4 . A SF4 301 1_555 D N SAM . A SAM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? 
metalc ? metalc6 C FE3 SF4 . A SF4 301 1_555 D O SAM . A SAM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? 
metalc ? metalc7 E N5 2K8 . A 2K8 303 1_555 F MN MN . A MN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? 
metalc ? metalc8 E O4 2K8 . A 2K8 303 1_555 F MN MN . A MN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? 
metalc ? metalc9 F MN MN . A MN 304 1_555 M O HOH . A HOH 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? 
metalc ? metalc10 B SG CYS 51 B CYS 31 1_555 H FE4 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? 
metalc ? metalc11 B SG CYS 66 B CYS 46 1_555 H FE1 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? 
metalc ? metalc12 B SG CYS 69 B CYS 49 1_555 H FE2 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? 
metalc ? metalc13 B OD2 ASP 72 B ASP 52 1_555 L MN MN . B MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.585 ? 
metalc ? metalc14 H FE3 SF4 . B SF4 301 1_555 I N SAM . B SAM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? 
metalc ? metalc15 H FE3 SF4 . B SF4 301 1_555 I O SAM . B SAM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? 
metalc ? metalc16 J N5 2K8 . B 2K8 303 1_555 K MN MN . B MN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? 
metalc ? metalc17 J O4 2K8 . B 2K8 303 1_555 K MN MN . B MN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.777 ? 
metalc ? metalc18 K MN MN . B MN 304 1_555 N O HOH . B HOH 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? 
metalc ? metalc19 K MN MN . B MN 304 1_555 N O HOH . B HOH 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? 
#
_chem_comp.formula           'C15 H22 N6 O5 S' 
_chem_comp.formula_weight    398.437 
_chem_comp.id                SAM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              S-ADENOSYLMETHIONINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAM sing 302 n n 
N HN1 SAM sing 303 n n 
N HN2 SAM sing 304 n n 
CA C SAM sing 305 n n 
CA CB SAM sing 306 n n 
CA HA SAM sing 307 n n 
C O SAM doub 308 n n 
C OXT SAM sing 309 n n 
CB CG SAM sing 310 n n 
CB HB1 SAM sing 311 n n 
CB HB2 SAM sing 312 n n 
CG SD SAM sing 313 n n 
CG HG1 SAM sing 314 n n 
CG HG2 SAM sing 315 n n 
SD CE SAM sing 316 n n 
SD C5' SAM sing 317 n n 
CE HE1 SAM sing 318 n n 
CE HE2 SAM sing 319 n n 
CE HE3 SAM sing 320 n n 
C5' C4' SAM sing 321 n n 
C5' "H5'1" SAM sing 322 n n 
C5' "H5'2" SAM sing 323 n n 
C4' O4' SAM sing 324 n n 
C4' C3' SAM sing 325 n n 
C4' H4' SAM sing 326 n n 
O4' C1' SAM sing 327 n n 
C3' O3' SAM sing 328 n n 
C3' C2' SAM sing 329 n n 
C3' H3' SAM sing 330 n n 
O3' HO3' SAM sing 331 n n 
C2' O2' SAM sing 332 n n 
C2' C1' SAM sing 333 n n 
C2' H2' SAM sing 334 n n 
O2' HO2' SAM sing 335 n n 
C1' N9 SAM sing 336 n n 
C1' H1' SAM sing 337 n n 
N9 C8 SAM sing 338 n y 
N9 C4 SAM sing 339 n y 
C8 N7 SAM doub 340 n y 
C8 H8 SAM sing 341 n n 
N7 C5 SAM sing 342 n y 
C5 C6 SAM sing 343 n y 
C5 C4 SAM doub 344 n y 
C6 N6 SAM sing 345 n n 
C6 N1 SAM doub 346 n y 
N6 HN61 SAM sing 347 n n 
N6 HN62 SAM sing 348 n n 
N1 C2 SAM sing 349 n y 
C2 N3 SAM doub 350 n y 
C2 H2 SAM sing 351 n n 
N3 C4 SAM sing 352 n y 
#
_atom_sites.entry_id                     4NJJ 
_atom_sites.fract_transf_matrix[1][1]    0.008391 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008391 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009496 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SF4 A 1 301 240 SF4 SF4 . 
D 3 SAM A 1 302 241 SAM SAM . 
E 4 2K8 A 1 303 501 2K8 2K8 . 
F 5 MN A 1 304 601 MN MN . 
G 5 MN A 1 305 2 MN MN . 
H 2 SF4 B 1 301 240 SF4 SF4 . 
I 3 SAM B 1 302 241 SAM SAM . 
J 4 2K8 B 1 303 501 2K8 2K8 . 
K 5 MN B 1 304 601 MN MN . 
L 5 MN B 1 305 1 MN MN . 
M 6 HOH A 1 401 2 HOH HOH . 
M 6 HOH A 2 402 5 HOH HOH . 
M 6 HOH A 3 403 6 HOH HOH . 
M 6 HOH A 4 404 7 HOH HOH . 
M 6 HOH A 5 405 8 HOH HOH . 
M 6 HOH A 6 406 12 HOH HOH . 
M 6 HOH A 7 407 13 HOH HOH . 
M 6 HOH A 8 408 16 HOH HOH . 
M 6 HOH A 9 409 18 HOH HOH . 
M 6 HOH A 10 410 22 HOH HOH . 
M 6 HOH A 11 411 24 HOH HOH . 
M 6 HOH A 12 412 25 HOH HOH . 
M 6 HOH A 13 413 29 HOH HOH . 
M 6 HOH A 14 414 31 HOH HOH . 
M 6 HOH A 15 415 32 HOH HOH . 
M 6 HOH A 16 416 33 HOH HOH . 
M 6 HOH A 17 417 37 HOH HOH . 
M 6 HOH A 18 418 38 HOH HOH . 
M 6 HOH A 19 419 39 HOH HOH . 
M 6 HOH A 20 420 40 HOH HOH . 
M 6 HOH A 21 421 41 HOH HOH . 
M 6 HOH A 22 422 42 HOH HOH . 
M 6 HOH A 23 423 45 HOH HOH . 
M 6 HOH A 24 424 48 HOH HOH . 
M 6 HOH A 25 425 50 HOH HOH . 
M 6 HOH A 26 426 51 HOH HOH . 
M 6 HOH A 27 427 53 HOH HOH . 
M 6 HOH A 28 428 55 HOH HOH . 
M 6 HOH A 29 429 56 HOH HOH . 
M 6 HOH A 30 430 57 HOH HOH . 
M 6 HOH A 31 431 60 HOH HOH . 
M 6 HOH A 32 432 61 HOH HOH . 
M 6 HOH A 33 433 63 HOH HOH . 
M 6 HOH A 34 434 64 HOH HOH . 
M 6 HOH A 35 435 65 HOH HOH . 
M 6 HOH A 36 436 67 HOH HOH . 
N 6 HOH B 1 401 1 HOH HOH . 
N 6 HOH B 2 402 3 HOH HOH . 
N 6 HOH B 3 403 4 HOH HOH . 
N 6 HOH B 4 404 9 HOH HOH . 
N 6 HOH B 5 405 10 HOH HOH . 
N 6 HOH B 6 406 11 HOH HOH . 
N 6 HOH B 7 407 14 HOH HOH . 
N 6 HOH B 8 408 15 HOH HOH . 
N 6 HOH B 9 409 17 HOH HOH . 
N 6 HOH B 10 410 19 HOH HOH . 
N 6 HOH B 11 411 20 HOH HOH . 
N 6 HOH B 12 412 21 HOH HOH . 
N 6 HOH B 13 413 23 HOH HOH . 
N 6 HOH B 14 414 26 HOH HOH . 
N 6 HOH B 15 415 27 HOH HOH . 
N 6 HOH B 16 416 28 HOH HOH . 
N 6 HOH B 17 417 30 HOH HOH . 
N 6 HOH B 18 418 34 HOH HOH . 
N 6 HOH B 19 419 35 HOH HOH . 
N 6 HOH B 20 420 36 HOH HOH . 
N 6 HOH B 21 421 43 HOH HOH . 
N 6 HOH B 22 422 44 HOH HOH . 
N 6 HOH B 23 423 46 HOH HOH . 
N 6 HOH B 24 424 47 HOH HOH . 
N 6 HOH B 25 425 49 HOH HOH . 
N 6 HOH B 26 426 52 HOH HOH . 
N 6 HOH B 27 427 54 HOH HOH . 
N 6 HOH B 28 428 58 HOH HOH . 
N 6 HOH B 29 429 59 HOH HOH . 
N 6 HOH B 30 430 62 HOH HOH . 
N 6 HOH B 31 431 66 HOH HOH . 
N 6 HOH B 32 432 68 HOH HOH . 
N 6 HOH B 33 433 69 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAM . . . D 3 -18.299 85.756 21.912 1 48.28 ? N SAM 302 A 1 
HETATM 2 C CA SAM . . . D 3 -17.173 86.609 21.496 1 48.13 ? CA SAM 302 A 1 
HETATM 3 C C SAM . . . D 3 -16.795 86.429 19.989 1 49.37 ? C SAM 302 A 1 
HETATM 4 O O SAM . . . D 3 -17.438 85.57 19.346 1 50.83 ? O SAM 302 A 1 
HETATM 5 O OXT SAM . . . D 3 -15.88 87.146 19.532 1 45.97 ? OXT SAM 302 A 1 
HETATM 6 C CB SAM . . . D 3 -15.893 86.315 22.321 1 41.38 ? CB SAM 302 A 1 
HETATM 7 C CG SAM . . . D 3 -15.768 84.841 22.785 1 45.15 ? CG SAM 302 A 1 
HETATM 8 S SD SAM . . . D 3 -15.421 83.748 21.428 1 53.97 ? SD SAM 302 A 1 
HETATM 9 C CE SAM . . . D 3 -15.463 82.195 22.227 1 51.81 ? CE SAM 302 A 1 
HETATM 10 C C5' SAM . . . D 3 -13.65 83.962 21.221 1 61.35 ? C5' SAM 302 A 1 
HETATM 11 C C4' SAM . . . D 3 -13.13 83.806 19.764 1 52.77 ? C4' SAM 302 A 1 
HETATM 12 O O4' SAM . . . D 3 -13.095 82.411 19.378 1 52.27 ? O4' SAM 302 A 1 
HETATM 13 C C3' SAM . . . D 3 -13.985 84.527 18.717 1 45.11 ? C3' SAM 302 A 1 
HETATM 14 O O3' SAM . . . D 3 -13.179 85.223 17.773 1 44.04 ? O3' SAM 302 A 1 
HETATM 15 C C2' SAM . . . D 3 -14.744 83.383 18.042 1 47.33 ? C2' SAM 302 A 1 
HETATM 16 O O2' SAM . . . D 3 -15.072 83.699 16.696 1 55.19 ? O2' SAM 302 A 1 
HETATM 17 C C1' SAM . . . D 3 -13.703 82.276 18.11 1 49.16 ? C1' SAM 302 A 1 
HETATM 18 N N9 SAM . . . D 3 -14.256 80.933 17.985 1 45.88 ? N9 SAM 302 A 1 
HETATM 19 C C8 SAM . . . D 3 -15.316 80.401 18.672 1 54.39 ? C8 SAM 302 A 1 
HETATM 20 N N7 SAM . . . D 3 -15.631 79.182 18.306 1 49.74 ? N7 SAM 302 A 1 
HETATM 21 C C5 SAM . . . D 3 -14.713 78.891 17.307 1 45.34 ? C5 SAM 302 A 1 
HETATM 22 C C6 SAM . . . D 3 -14.523 77.757 16.495 1 48.25 ? C6 SAM 302 A 1 
HETATM 23 N N6 SAM . . . D 3 -15.284 76.659 16.559 1 49.51 ? N6 SAM 302 A 1 
HETATM 24 N N1 SAM . . . D 3 -13.517 77.794 15.594 1 48.89 ? N1 SAM 302 A 1 
HETATM 25 C C2 SAM . . . D 3 -12.763 78.891 15.516 1 40.09 ? C2 SAM 302 A 1 
HETATM 26 N N3 SAM . . . D 3 -12.851 80.018 16.223 1 50.92 ? N3 SAM 302 A 1 
HETATM 27 C C4 SAM . . . D 3 -13.855 79.957 17.106 1 47.91 ? C4 SAM 302 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           27 
#