data_4NJQ # _model_server_result.job_id CrGkj4g7HaODKpuJN5JDCw _model_server_result.datetime_utc '2024-11-29 16:16:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4njq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":502}' # _entry.id 4NJQ # _exptl.entry_id 4NJQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.933 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COBALT (II) ION' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4NJQ _cell.length_a 133.205 _cell.length_b 133.205 _cell.length_c 322.316 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4NJQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 I N N ? 2 J N N ? 2 L N N ? 2 M N N ? 2 P N N ? 2 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 82 A HIS 82 1_555 E CO CO . A CO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc2 A OD1 ASP 236 A ASP 236 1_555 E CO CO . A CO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc3 A OD2 ASP 236 A ASP 236 1_555 F CO CO . A CO 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.865 ? metalc ? metalc4 A OE1 GLU 266 A GLU 266 1_555 F CO CO . A CO 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc5 A OE2 GLU 266 A GLU 266 1_555 F CO CO . A CO 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc6 A OD1 ASP 307 A ASP 307 1_555 E CO CO . A CO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc7 A OD2 ASP 307 A ASP 307 1_555 E CO CO . A CO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc8 A NE2 HIS 401 A HIS 401 1_555 F CO CO . A CO 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.677 ? metalc ? metalc9 E CO CO . A CO 501 1_555 G O3 CO3 . A CO3 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? metalc ? metalc10 F CO CO . A CO 502 1_555 G O2 CO3 . A CO3 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.741 ? metalc ? metalc11 B NE2 HIS 82 B HIS 82 1_555 I CO CO . B CO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc12 B OD1 ASP 236 B ASP 236 1_555 I CO CO . B CO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc13 B OD2 ASP 236 B ASP 236 1_555 J CO CO . B CO 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.924 ? metalc ? metalc14 B OE1 GLU 266 B GLU 266 1_555 J CO CO . B CO 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.837 ? metalc ? metalc15 B OE2 GLU 266 B GLU 266 1_555 J CO CO . B CO 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? metalc ? metalc16 B OD1 ASP 307 B ASP 307 1_555 I CO CO . B CO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc17 B OD2 ASP 307 B ASP 307 1_555 I CO CO . B CO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.576 ? metalc ? metalc18 B NE2 HIS 401 B HIS 401 1_555 J CO CO . B CO 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc19 I CO CO . B CO 501 1_555 K O1 CO3 . B CO3 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? metalc ? metalc20 J CO CO . B CO 502 1_555 K O2 CO3 . B CO3 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.8 ? metalc ? metalc21 C NE2 HIS 82 C HIS 82 1_555 L CO CO . C CO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc22 C OD1 ASP 236 C ASP 236 1_555 L CO CO . C CO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc23 C OD2 ASP 236 C ASP 236 1_555 M CO CO . C CO 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.903 ? metalc ? metalc24 C OE1 GLU 266 C GLU 266 1_555 M CO CO . C CO 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc25 C OE2 GLU 266 C GLU 266 1_555 M CO CO . C CO 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc26 C OD1 ASP 307 C ASP 307 1_555 L CO CO . C CO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc27 C OD2 ASP 307 C ASP 307 1_555 L CO CO . C CO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc28 C NE2 HIS 401 C HIS 401 1_555 M CO CO . C CO 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc29 L CO CO . C CO 501 1_555 N O2 CO3 . C CO3 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc30 M CO CO . C CO 502 1_555 N O2 CO3 . C CO3 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.666 ? metalc ? metalc31 M CO CO . C CO 502 1_555 N O3 CO3 . C CO3 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? metalc ? metalc32 D NE2 HIS 82 D HIS 82 1_555 Q CO CO . D CO 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc33 D OD2 ASP 236 D ASP 236 1_555 P CO CO . D CO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc34 D OD1 ASP 236 D ASP 236 1_555 Q CO CO . D CO 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc35 D OE1 GLU 266 D GLU 266 1_555 P CO CO . D CO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.799 ? metalc ? metalc36 D OE2 GLU 266 D GLU 266 1_555 P CO CO . D CO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.822 ? metalc ? metalc37 D OD1 ASP 307 D ASP 307 1_555 Q CO CO . D CO 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc38 D OD2 ASP 307 D ASP 307 1_555 Q CO CO . D CO 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.603 ? metalc ? metalc39 D NE2 HIS 401 D HIS 401 1_555 P CO CO . D CO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc40 P CO CO . D CO 501 1_555 R O2 CO3 . D CO3 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? metalc ? metalc41 P CO CO . D CO 501 1_555 R O3 CO3 . D CO3 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.716 ? metalc ? metalc42 Q CO CO . D CO 502 1_555 R O3 CO3 . D CO3 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? # _chem_comp.formula 'Co 2' _chem_comp.formula_weight 58.933 _chem_comp.id CO _chem_comp.mon_nstd_flag . _chem_comp.name 'COBALT (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4NJQ _atom_sites.fract_transf_matrix[1][1] 0.007507 _atom_sites.fract_transf_matrix[1][2] 0.004334 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008669 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003103 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 CO A 1 501 7 CO CO . F 2 CO A 1 502 8 CO CO . G 3 CO3 A 1 503 503 CO3 CO3 . H 4 NHE A 1 504 3 NHE NHE . I 2 CO B 1 501 1 CO CO . J 2 CO B 1 502 2 CO CO . K 3 CO3 B 1 503 500 CO3 CO3 . L 2 CO C 1 501 3 CO CO . M 2 CO C 1 502 4 CO CO . N 3 CO3 C 1 503 501 CO3 CO3 . O 4 NHE C 1 504 1 NHE NHE . P 2 CO D 1 501 5 CO CO . Q 2 CO D 1 502 6 CO CO . R 3 CO3 D 1 503 502 CO3 CO3 . S 4 NHE D 1 504 2 NHE NHE . T 5 HOH A 1 601 1 HOH HOH . T 5 HOH A 2 602 6 HOH HOH . T 5 HOH A 3 603 7 HOH HOH . T 5 HOH A 4 604 8 HOH HOH . T 5 HOH A 5 605 11 HOH HOH . T 5 HOH A 6 606 13 HOH HOH . T 5 HOH A 7 607 17 HOH HOH . T 5 HOH A 8 608 20 HOH HOH . T 5 HOH A 9 609 23 HOH HOH . T 5 HOH A 10 610 29 HOH HOH . T 5 HOH A 11 611 31 HOH HOH . T 5 HOH A 12 612 32 HOH HOH . T 5 HOH A 13 613 37 HOH HOH . T 5 HOH A 14 614 40 HOH HOH . T 5 HOH A 15 615 41 HOH HOH . T 5 HOH A 16 616 43 HOH HOH . T 5 HOH A 17 617 48 HOH HOH . T 5 HOH A 18 618 49 HOH HOH . T 5 HOH A 19 619 54 HOH HOH . T 5 HOH A 20 620 63 HOH HOH . T 5 HOH A 21 621 68 HOH HOH . T 5 HOH A 22 622 73 HOH HOH . T 5 HOH A 23 623 74 HOH HOH . T 5 HOH A 24 624 76 HOH HOH . T 5 HOH A 25 625 83 HOH HOH . T 5 HOH A 26 626 89 HOH HOH . T 5 HOH A 27 627 104 HOH HOH . U 5 HOH B 1 601 2 HOH HOH . U 5 HOH B 2 602 21 HOH HOH . U 5 HOH B 3 603 22 HOH HOH . U 5 HOH B 4 604 24 HOH HOH . U 5 HOH B 5 605 39 HOH HOH . U 5 HOH B 6 606 45 HOH HOH . U 5 HOH B 7 607 47 HOH HOH . U 5 HOH B 8 608 51 HOH HOH . U 5 HOH B 9 609 53 HOH HOH . U 5 HOH B 10 610 58 HOH HOH . U 5 HOH B 11 611 75 HOH HOH . U 5 HOH B 12 612 79 HOH HOH . U 5 HOH B 13 613 82 HOH HOH . U 5 HOH B 14 614 84 HOH HOH . U 5 HOH B 15 615 92 HOH HOH . U 5 HOH B 16 616 94 HOH HOH . U 5 HOH B 17 617 96 HOH HOH . U 5 HOH B 18 618 99 HOH HOH . U 5 HOH B 19 619 101 HOH HOH . U 5 HOH B 20 620 110 HOH HOH . U 5 HOH B 21 621 111 HOH HOH . U 5 HOH B 22 622 112 HOH HOH . V 5 HOH C 1 601 9 HOH HOH . V 5 HOH C 2 602 10 HOH HOH . V 5 HOH C 3 603 14 HOH HOH . V 5 HOH C 4 604 15 HOH HOH . V 5 HOH C 5 605 16 HOH HOH . V 5 HOH C 6 606 18 HOH HOH . V 5 HOH C 7 607 26 HOH HOH . V 5 HOH C 8 608 33 HOH HOH . V 5 HOH C 9 609 35 HOH HOH . V 5 HOH C 10 610 44 HOH HOH . V 5 HOH C 11 611 46 HOH HOH . V 5 HOH C 12 612 50 HOH HOH . V 5 HOH C 13 613 56 HOH HOH . V 5 HOH C 14 614 59 HOH HOH . V 5 HOH C 15 615 60 HOH HOH . V 5 HOH C 16 616 62 HOH HOH . V 5 HOH C 17 617 77 HOH HOH . V 5 HOH C 18 618 88 HOH HOH . V 5 HOH C 19 619 91 HOH HOH . V 5 HOH C 20 620 97 HOH HOH . V 5 HOH C 21 621 105 HOH HOH . V 5 HOH C 22 622 106 HOH HOH . V 5 HOH C 23 623 108 HOH HOH . V 5 HOH C 24 624 113 HOH HOH . W 5 HOH D 1 601 3 HOH HOH . W 5 HOH D 2 602 4 HOH HOH . W 5 HOH D 3 603 5 HOH HOH . W 5 HOH D 4 604 12 HOH HOH . W 5 HOH D 5 605 19 HOH HOH . W 5 HOH D 6 606 25 HOH HOH . W 5 HOH D 7 607 27 HOH HOH . W 5 HOH D 8 608 28 HOH HOH . W 5 HOH D 9 609 30 HOH HOH . W 5 HOH D 10 610 36 HOH HOH . W 5 HOH D 11 611 38 HOH HOH . W 5 HOH D 12 612 42 HOH HOH . W 5 HOH D 13 613 52 HOH HOH . W 5 HOH D 14 614 55 HOH HOH . W 5 HOH D 15 615 57 HOH HOH . W 5 HOH D 16 616 61 HOH HOH . W 5 HOH D 17 617 67 HOH HOH . W 5 HOH D 18 618 69 HOH HOH . W 5 HOH D 19 619 71 HOH HOH . W 5 HOH D 20 620 72 HOH HOH . W 5 HOH D 21 621 80 HOH HOH . W 5 HOH D 22 622 81 HOH HOH . W 5 HOH D 23 623 85 HOH HOH . W 5 HOH D 24 624 86 HOH HOH . W 5 HOH D 25 625 87 HOH HOH . W 5 HOH D 26 626 90 HOH HOH . W 5 HOH D 27 627 93 HOH HOH . W 5 HOH D 28 628 95 HOH HOH . W 5 HOH D 29 629 102 HOH HOH . W 5 HOH D 30 630 114 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CO _atom_site.label_atom_id CO _atom_site.label_comp_id CO _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id M _atom_site.label_entity_id 2 _atom_site.Cartn_x -21.116 _atom_site.Cartn_y -26.863 _atom_site.Cartn_z -15.874 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 40 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CO _atom_site.auth_comp_id CO _atom_site.auth_seq_id 502 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #