data_4NK1
#
_model_server_result.job_id            66f8Pqmsrn0fLiFRJR3oSA 
_model_server_result.datetime_utc      '2024-10-28 02:35:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4nk1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":202}' 
#
_entry.id    4NK1 
#
_exptl.entry_id    4NK1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              94.971 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHATE ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4NK1 
_cell.length_a            68.258 
_cell.length_b            84.485 
_cell.length_c            92.991 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4NK1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 124 A HIS 124 1_555 C FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? 
metalc ? metalc2 C FE HEM . A HEM 201 1_555 D O4 PO4 . A PO4 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? 
metalc ? metalc3 B NE2 HIS 124 B HIS 124 1_555 E FE HEM . B HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? 
metalc ? metalc4 E FE HEM . B HEM 201 1_555 F O2 PO4 . B PO4 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
#
_chem_comp.formula           'O4 P -3' 
_chem_comp.formula_weight    94.971 
_chem_comp.id                PO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1 PO4 doub 342 n n 
P O2 PO4 sing 343 n n 
P O3 PO4 sing 344 n n 
P O4 PO4 sing 345 n n 
#
_atom_sites.entry_id                     4NK1 
_atom_sites.fract_transf_matrix[1][1]    0.01465 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011836 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010754 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 201 700 HEM HEM . 
D 3 PO4 A 1 202 361 PO4 PO4 . 
E 2 HEM B 1 201 700 HEM HEM . 
F 3 PO4 B 1 202 362 PO4 PO4 . 
G 4 HOH A 1 301 1 HOH HOH . 
G 4 HOH A 2 302 2 HOH HOH . 
G 4 HOH A 3 303 3 HOH HOH . 
G 4 HOH A 4 304 4 HOH HOH . 
G 4 HOH A 5 305 5 HOH HOH . 
G 4 HOH A 6 306 6 HOH HOH . 
G 4 HOH A 7 307 9 HOH HOH . 
G 4 HOH A 8 308 10 HOH HOH . 
G 4 HOH A 9 309 15 HOH HOH . 
G 4 HOH A 10 310 17 HOH HOH . 
G 4 HOH A 11 311 18 HOH HOH . 
G 4 HOH A 12 312 20 HOH HOH . 
G 4 HOH A 13 313 21 HOH HOH . 
G 4 HOH A 14 314 23 HOH HOH . 
G 4 HOH A 15 315 24 HOH HOH . 
G 4 HOH A 16 316 26 HOH HOH . 
G 4 HOH A 17 317 28 HOH HOH . 
G 4 HOH A 18 318 29 HOH HOH . 
G 4 HOH A 19 319 31 HOH HOH . 
G 4 HOH A 20 320 32 HOH HOH . 
G 4 HOH A 21 321 34 HOH HOH . 
G 4 HOH A 22 322 36 HOH HOH . 
G 4 HOH A 23 323 37 HOH HOH . 
G 4 HOH A 24 324 39 HOH HOH . 
G 4 HOH A 25 325 41 HOH HOH . 
G 4 HOH A 26 326 42 HOH HOH . 
G 4 HOH A 27 327 43 HOH HOH . 
G 4 HOH A 28 328 44 HOH HOH . 
G 4 HOH A 29 329 45 HOH HOH . 
G 4 HOH A 30 330 46 HOH HOH . 
G 4 HOH A 31 331 47 HOH HOH . 
G 4 HOH A 32 332 48 HOH HOH . 
G 4 HOH A 33 333 49 HOH HOH . 
G 4 HOH A 34 334 50 HOH HOH . 
G 4 HOH A 35 335 51 HOH HOH . 
G 4 HOH A 36 336 57 HOH HOH . 
G 4 HOH A 37 337 60 HOH HOH . 
G 4 HOH A 38 338 65 HOH HOH . 
G 4 HOH A 39 339 67 HOH HOH . 
G 4 HOH A 40 340 70 HOH HOH . 
G 4 HOH A 41 341 73 HOH HOH . 
G 4 HOH A 42 342 74 HOH HOH . 
G 4 HOH A 43 343 76 HOH HOH . 
G 4 HOH A 44 344 93 HOH HOH . 
G 4 HOH A 45 345 98 HOH HOH . 
G 4 HOH A 46 346 100 HOH HOH . 
G 4 HOH A 47 347 104 HOH HOH . 
G 4 HOH A 48 348 105 HOH HOH . 
G 4 HOH A 49 349 106 HOH HOH . 
G 4 HOH A 50 350 110 HOH HOH . 
G 4 HOH A 51 351 111 HOH HOH . 
G 4 HOH A 52 352 112 HOH HOH . 
G 4 HOH A 53 353 116 HOH HOH . 
G 4 HOH A 54 354 117 HOH HOH . 
G 4 HOH A 55 355 119 HOH HOH . 
G 4 HOH A 56 356 120 HOH HOH . 
G 4 HOH A 57 357 121 HOH HOH . 
G 4 HOH A 58 358 123 HOH HOH . 
G 4 HOH A 59 359 124 HOH HOH . 
G 4 HOH A 60 360 139 HOH HOH . 
G 4 HOH A 61 361 140 HOH HOH . 
G 4 HOH A 62 362 141 HOH HOH . 
G 4 HOH A 63 363 142 HOH HOH . 
G 4 HOH A 64 364 148 HOH HOH . 
G 4 HOH A 65 365 149 HOH HOH . 
G 4 HOH A 66 366 153 HOH HOH . 
G 4 HOH A 67 367 156 HOH HOH . 
G 4 HOH A 68 368 161 HOH HOH . 
G 4 HOH A 69 369 166 HOH HOH . 
G 4 HOH A 70 370 173 HOH HOH . 
G 4 HOH A 71 371 175 HOH HOH . 
G 4 HOH A 72 372 179 HOH HOH . 
G 4 HOH A 73 373 180 HOH HOH . 
G 4 HOH A 74 374 182 HOH HOH . 
G 4 HOH A 75 375 209 HOH HOH . 
G 4 HOH A 76 376 210 HOH HOH . 
G 4 HOH A 77 377 211 HOH HOH . 
G 4 HOH A 78 378 213 HOH HOH . 
G 4 HOH A 79 379 225 HOH HOH . 
G 4 HOH A 80 380 227 HOH HOH . 
G 4 HOH A 81 381 229 HOH HOH . 
G 4 HOH A 82 382 231 HOH HOH . 
G 4 HOH A 83 383 237 HOH HOH . 
G 4 HOH A 84 384 239 HOH HOH . 
G 4 HOH A 85 385 242 HOH HOH . 
G 4 HOH A 86 386 246 HOH HOH . 
G 4 HOH A 87 387 254 HOH HOH . 
G 4 HOH A 88 388 255 HOH HOH . 
G 4 HOH A 89 389 272 HOH HOH . 
G 4 HOH A 90 390 276 HOH HOH . 
G 4 HOH A 91 391 308 HOH HOH . 
G 4 HOH A 92 392 309 HOH HOH . 
G 4 HOH A 93 393 315 HOH HOH . 
G 4 HOH A 94 394 318 HOH HOH . 
G 4 HOH A 95 395 319 HOH HOH . 
G 4 HOH A 96 396 320 HOH HOH . 
G 4 HOH A 97 397 322 HOH HOH . 
G 4 HOH A 98 398 323 HOH HOH . 
G 4 HOH A 99 399 331 HOH HOH . 
G 4 HOH A 100 400 332 HOH HOH . 
G 4 HOH A 101 401 333 HOH HOH . 
G 4 HOH A 102 402 338 HOH HOH . 
G 4 HOH A 103 403 339 HOH HOH . 
G 4 HOH A 104 404 340 HOH HOH . 
G 4 HOH A 105 405 343 HOH HOH . 
G 4 HOH A 106 406 345 HOH HOH . 
G 4 HOH A 107 407 354 HOH HOH . 
G 4 HOH A 108 408 357 HOH HOH . 
G 4 HOH A 109 409 360 HOH HOH . 
H 4 HOH B 1 301 7 HOH HOH . 
H 4 HOH B 2 302 11 HOH HOH . 
H 4 HOH B 3 303 12 HOH HOH . 
H 4 HOH B 4 304 13 HOH HOH . 
H 4 HOH B 5 305 14 HOH HOH . 
H 4 HOH B 6 306 16 HOH HOH . 
H 4 HOH B 7 307 19 HOH HOH . 
H 4 HOH B 8 308 22 HOH HOH . 
H 4 HOH B 9 309 27 HOH HOH . 
H 4 HOH B 10 310 35 HOH HOH . 
H 4 HOH B 11 311 38 HOH HOH . 
H 4 HOH B 12 312 52 HOH HOH . 
H 4 HOH B 13 313 58 HOH HOH . 
H 4 HOH B 14 314 62 HOH HOH . 
H 4 HOH B 15 315 64 HOH HOH . 
H 4 HOH B 16 316 66 HOH HOH . 
H 4 HOH B 17 317 77 HOH HOH . 
H 4 HOH B 18 318 78 HOH HOH . 
H 4 HOH B 19 319 79 HOH HOH . 
H 4 HOH B 20 320 80 HOH HOH . 
H 4 HOH B 21 321 81 HOH HOH . 
H 4 HOH B 22 322 83 HOH HOH . 
H 4 HOH B 23 323 84 HOH HOH . 
H 4 HOH B 24 324 85 HOH HOH . 
H 4 HOH B 25 325 86 HOH HOH . 
H 4 HOH B 26 326 87 HOH HOH . 
H 4 HOH B 27 327 88 HOH HOH . 
H 4 HOH B 28 328 90 HOH HOH . 
H 4 HOH B 29 329 94 HOH HOH . 
H 4 HOH B 30 330 95 HOH HOH . 
H 4 HOH B 31 331 96 HOH HOH . 
H 4 HOH B 32 332 97 HOH HOH . 
H 4 HOH B 33 333 99 HOH HOH . 
H 4 HOH B 34 334 102 HOH HOH . 
H 4 HOH B 35 335 103 HOH HOH . 
H 4 HOH B 36 336 115 HOH HOH . 
H 4 HOH B 37 337 125 HOH HOH . 
H 4 HOH B 38 338 127 HOH HOH . 
H 4 HOH B 39 339 128 HOH HOH . 
H 4 HOH B 40 340 129 HOH HOH . 
H 4 HOH B 41 341 130 HOH HOH . 
H 4 HOH B 42 342 135 HOH HOH . 
H 4 HOH B 43 343 136 HOH HOH . 
H 4 HOH B 44 344 137 HOH HOH . 
H 4 HOH B 45 345 146 HOH HOH . 
H 4 HOH B 46 346 147 HOH HOH . 
H 4 HOH B 47 347 150 HOH HOH . 
H 4 HOH B 48 348 155 HOH HOH . 
H 4 HOH B 49 349 164 HOH HOH . 
H 4 HOH B 50 350 165 HOH HOH . 
H 4 HOH B 51 351 169 HOH HOH . 
H 4 HOH B 52 352 171 HOH HOH . 
H 4 HOH B 53 353 176 HOH HOH . 
H 4 HOH B 54 354 178 HOH HOH . 
H 4 HOH B 55 355 197 HOH HOH . 
H 4 HOH B 56 356 200 HOH HOH . 
H 4 HOH B 57 357 201 HOH HOH . 
H 4 HOH B 58 358 202 HOH HOH . 
H 4 HOH B 59 359 220 HOH HOH . 
H 4 HOH B 60 360 271 HOH HOH . 
H 4 HOH B 61 361 311 HOH HOH . 
H 4 HOH B 62 362 329 HOH HOH . 
H 4 HOH B 63 363 330 HOH HOH . 
H 4 HOH B 64 364 346 HOH HOH . 
H 4 HOH B 65 365 347 HOH HOH . 
H 4 HOH B 66 366 348 HOH HOH . 
H 4 HOH B 67 367 353 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P PO4 . . . F 3 56.362 54.637 24.802 1 50.9 ? P PO4 202 B 1 
HETATM 2 O O1 PO4 . . . F 3 56.986 55.874 24.255 1 52.25 ? O1 PO4 202 B 1 
HETATM 3 O O2 PO4 . . . F 3 55.095 54.345 24.059 1 42.36 ? O2 PO4 202 B 1 
HETATM 4 O O3 PO4 . . . F 3 57.325 53.499 24.687 1 49.29 ? O3 PO4 202 B 1 
HETATM 5 O O4 PO4 . . . F 3 56.068 54.867 26.245 1 46.83 ? O4 PO4 202 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           323 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           5 
#