data_4NKB # _model_server_result.job_id JVq3Q4cJAMN6bEyAZVeGEg _model_server_result.datetime_utc '2024-11-05 00:38:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4nkb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":602}' # _entry.id 4NKB # _exptl.entry_id 4NKB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.31 _cell.angle_gamma 90 _cell.entry_id 4NKB _cell.length_a 53.383 _cell.length_b 60.093 _cell.length_c 87.515 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4NKB _symmetry.cell_setting ? _symmetry.Int_Tables_number 3 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 PISA tetrameric 4 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 1 2 A,B,C,D,E,F,G,H,I,J 2 1,2 A,C,D,E,I 3 1,3 B,F,G,H,J 3 4,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 48.330035 0 87.369004 3 'crystal symmetry operation' 2_756 -x+2,y,-z+1 -1 0 0 0 1 0 0 0 -1 101.713035 0 87.369004 4 'crystal symmetry operation' 1_655 x+1,y,z 1 0 0 0 1 0 0 0 1 53.383 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D MG MG . A MG 602 1_555 E O2 DTT . A DTT 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? metalc ? metalc2 D MG MG . A MG 602 1_555 I O HOH . A HOH 783 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc3 G MG MG . B MG 602 1_555 J O HOH . B HOH 771 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? metalc ? metalc4 G MG MG . B MG 602 1_555 J O HOH . B HOH 774 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.858 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4NKB _atom_sites.fract_transf_matrix[1][1] 0.018733 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001083 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016641 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011446 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 601 1 MG MG . D 2 MG A 1 602 3 MG MG . E 3 DTT A 1 603 1 DTT DTT . F 4 TRS B 1 601 1 TRS TRS . G 2 MG B 1 602 2 MG MG . H 3 DTT B 1 603 2 DTT DTT . I 5 HOH A 1 701 4 HOH HOH . I 5 HOH A 2 702 6 HOH HOH . I 5 HOH A 3 703 10 HOH HOH . I 5 HOH A 4 704 13 HOH HOH . I 5 HOH A 5 705 16 HOH HOH . I 5 HOH A 6 706 21 HOH HOH . I 5 HOH A 7 707 22 HOH HOH . I 5 HOH A 8 708 25 HOH HOH . I 5 HOH A 9 709 27 HOH HOH . I 5 HOH A 10 710 29 HOH HOH . I 5 HOH A 11 711 31 HOH HOH . I 5 HOH A 12 712 35 HOH HOH . I 5 HOH A 13 713 37 HOH HOH . I 5 HOH A 14 714 38 HOH HOH . I 5 HOH A 15 715 39 HOH HOH . I 5 HOH A 16 716 40 HOH HOH . I 5 HOH A 17 717 41 HOH HOH . I 5 HOH A 18 718 42 HOH HOH . I 5 HOH A 19 719 45 HOH HOH . I 5 HOH A 20 720 49 HOH HOH . I 5 HOH A 21 721 50 HOH HOH . I 5 HOH A 22 722 51 HOH HOH . I 5 HOH A 23 723 52 HOH HOH . I 5 HOH A 24 724 54 HOH HOH . I 5 HOH A 25 725 56 HOH HOH . I 5 HOH A 26 726 57 HOH HOH . I 5 HOH A 27 727 58 HOH HOH . I 5 HOH A 28 728 62 HOH HOH . I 5 HOH A 29 729 64 HOH HOH . I 5 HOH A 30 730 65 HOH HOH . I 5 HOH A 31 731 66 HOH HOH . I 5 HOH A 32 732 67 HOH HOH . I 5 HOH A 33 733 68 HOH HOH . I 5 HOH A 34 734 70 HOH HOH . I 5 HOH A 35 735 72 HOH HOH . I 5 HOH A 36 736 74 HOH HOH . I 5 HOH A 37 737 75 HOH HOH . I 5 HOH A 38 738 76 HOH HOH . I 5 HOH A 39 739 77 HOH HOH . I 5 HOH A 40 740 79 HOH HOH . I 5 HOH A 41 741 80 HOH HOH . I 5 HOH A 42 742 81 HOH HOH . I 5 HOH A 43 743 83 HOH HOH . I 5 HOH A 44 744 84 HOH HOH . I 5 HOH A 45 745 85 HOH HOH . I 5 HOH A 46 746 87 HOH HOH . I 5 HOH A 47 747 88 HOH HOH . I 5 HOH A 48 748 89 HOH HOH . I 5 HOH A 49 749 92 HOH HOH . I 5 HOH A 50 750 102 HOH HOH . I 5 HOH A 51 751 104 HOH HOH . I 5 HOH A 52 752 112 HOH HOH . I 5 HOH A 53 753 116 HOH HOH . I 5 HOH A 54 754 120 HOH HOH . I 5 HOH A 55 755 121 HOH HOH . I 5 HOH A 56 756 123 HOH HOH . I 5 HOH A 57 757 124 HOH HOH . I 5 HOH A 58 758 125 HOH HOH . I 5 HOH A 59 759 129 HOH HOH . I 5 HOH A 60 760 134 HOH HOH . I 5 HOH A 61 761 135 HOH HOH . I 5 HOH A 62 762 136 HOH HOH . I 5 HOH A 63 763 138 HOH HOH . I 5 HOH A 64 764 140 HOH HOH . I 5 HOH A 65 765 141 HOH HOH . I 5 HOH A 66 766 142 HOH HOH . I 5 HOH A 67 767 144 HOH HOH . I 5 HOH A 68 768 145 HOH HOH . I 5 HOH A 69 769 146 HOH HOH . I 5 HOH A 70 770 147 HOH HOH . I 5 HOH A 71 771 150 HOH HOH . I 5 HOH A 72 772 151 HOH HOH . I 5 HOH A 73 773 152 HOH HOH . I 5 HOH A 74 774 153 HOH HOH . I 5 HOH A 75 775 159 HOH HOH . I 5 HOH A 76 776 165 HOH HOH . I 5 HOH A 77 777 166 HOH HOH . I 5 HOH A 78 778 167 HOH HOH . I 5 HOH A 79 779 168 HOH HOH . I 5 HOH A 80 780 169 HOH HOH . I 5 HOH A 81 781 170 HOH HOH . I 5 HOH A 82 782 173 HOH HOH . I 5 HOH A 83 783 174 HOH HOH . I 5 HOH A 84 784 176 HOH HOH . I 5 HOH A 85 785 177 HOH HOH . I 5 HOH A 86 786 178 HOH HOH . I 5 HOH A 87 787 180 HOH HOH . I 5 HOH A 88 788 183 HOH HOH . I 5 HOH A 89 789 184 HOH HOH . I 5 HOH A 90 790 188 HOH HOH . I 5 HOH A 91 791 189 HOH HOH . I 5 HOH A 92 792 190 HOH HOH . I 5 HOH A 93 793 191 HOH HOH . I 5 HOH A 94 794 193 HOH HOH . I 5 HOH A 95 795 194 HOH HOH . I 5 HOH A 96 796 195 HOH HOH . I 5 HOH A 97 797 199 HOH HOH . I 5 HOH A 98 798 202 HOH HOH . I 5 HOH A 99 799 205 HOH HOH . I 5 HOH A 100 800 207 HOH HOH . I 5 HOH A 101 801 209 HOH HOH . I 5 HOH A 102 802 211 HOH HOH . I 5 HOH A 103 803 212 HOH HOH . I 5 HOH A 104 804 213 HOH HOH . I 5 HOH A 105 805 214 HOH HOH . I 5 HOH A 106 806 216 HOH HOH . I 5 HOH A 107 807 218 HOH HOH . I 5 HOH A 108 808 220 HOH HOH . I 5 HOH A 109 809 221 HOH HOH . I 5 HOH A 110 810 222 HOH HOH . I 5 HOH A 111 811 224 HOH HOH . I 5 HOH A 112 812 225 HOH HOH . I 5 HOH A 113 813 203 HOH HOH . J 5 HOH B 1 701 1 HOH HOH . J 5 HOH B 2 702 2 HOH HOH . J 5 HOH B 3 703 3 HOH HOH . J 5 HOH B 4 704 5 HOH HOH . J 5 HOH B 5 705 7 HOH HOH . J 5 HOH B 6 706 8 HOH HOH . J 5 HOH B 7 707 9 HOH HOH . J 5 HOH B 8 708 11 HOH HOH . J 5 HOH B 9 709 12 HOH HOH . J 5 HOH B 10 710 14 HOH HOH . J 5 HOH B 11 711 15 HOH HOH . J 5 HOH B 12 712 17 HOH HOH . J 5 HOH B 13 713 18 HOH HOH . J 5 HOH B 14 714 19 HOH HOH . J 5 HOH B 15 715 20 HOH HOH . J 5 HOH B 16 716 23 HOH HOH . J 5 HOH B 17 717 24 HOH HOH . J 5 HOH B 18 718 26 HOH HOH . J 5 HOH B 19 719 28 HOH HOH . J 5 HOH B 20 720 30 HOH HOH . J 5 HOH B 21 721 32 HOH HOH . J 5 HOH B 22 722 33 HOH HOH . J 5 HOH B 23 723 34 HOH HOH . J 5 HOH B 24 724 36 HOH HOH . J 5 HOH B 25 725 43 HOH HOH . J 5 HOH B 26 726 44 HOH HOH . J 5 HOH B 27 727 46 HOH HOH . J 5 HOH B 28 728 47 HOH HOH . J 5 HOH B 29 729 48 HOH HOH . J 5 HOH B 30 730 53 HOH HOH . J 5 HOH B 31 731 55 HOH HOH . J 5 HOH B 32 732 59 HOH HOH . J 5 HOH B 33 733 60 HOH HOH . J 5 HOH B 34 734 61 HOH HOH . J 5 HOH B 35 735 63 HOH HOH . J 5 HOH B 36 736 69 HOH HOH . J 5 HOH B 37 737 71 HOH HOH . J 5 HOH B 38 738 73 HOH HOH . J 5 HOH B 39 739 78 HOH HOH . J 5 HOH B 40 740 82 HOH HOH . J 5 HOH B 41 741 86 HOH HOH . J 5 HOH B 42 742 90 HOH HOH . J 5 HOH B 43 743 91 HOH HOH . J 5 HOH B 44 744 93 HOH HOH . J 5 HOH B 45 745 94 HOH HOH . J 5 HOH B 46 746 95 HOH HOH . J 5 HOH B 47 747 96 HOH HOH . J 5 HOH B 48 748 97 HOH HOH . J 5 HOH B 49 749 98 HOH HOH . J 5 HOH B 50 750 99 HOH HOH . J 5 HOH B 51 751 100 HOH HOH . J 5 HOH B 52 752 101 HOH HOH . J 5 HOH B 53 753 103 HOH HOH . J 5 HOH B 54 754 105 HOH HOH . J 5 HOH B 55 755 106 HOH HOH . J 5 HOH B 56 756 107 HOH HOH . J 5 HOH B 57 757 108 HOH HOH . J 5 HOH B 58 758 109 HOH HOH . J 5 HOH B 59 759 110 HOH HOH . J 5 HOH B 60 760 111 HOH HOH . J 5 HOH B 61 761 113 HOH HOH . J 5 HOH B 62 762 114 HOH HOH . J 5 HOH B 63 763 115 HOH HOH . J 5 HOH B 64 764 117 HOH HOH . J 5 HOH B 65 765 118 HOH HOH . J 5 HOH B 66 766 119 HOH HOH . J 5 HOH B 67 767 122 HOH HOH . J 5 HOH B 68 768 126 HOH HOH . J 5 HOH B 69 769 127 HOH HOH . J 5 HOH B 70 770 128 HOH HOH . J 5 HOH B 71 771 130 HOH HOH . J 5 HOH B 72 772 131 HOH HOH . J 5 HOH B 73 773 132 HOH HOH . J 5 HOH B 74 774 133 HOH HOH . J 5 HOH B 75 775 137 HOH HOH . J 5 HOH B 76 776 139 HOH HOH . J 5 HOH B 77 777 143 HOH HOH . J 5 HOH B 78 778 148 HOH HOH . J 5 HOH B 79 779 149 HOH HOH . J 5 HOH B 80 780 154 HOH HOH . J 5 HOH B 81 781 155 HOH HOH . J 5 HOH B 82 782 156 HOH HOH . J 5 HOH B 83 783 157 HOH HOH . J 5 HOH B 84 784 158 HOH HOH . J 5 HOH B 85 785 160 HOH HOH . J 5 HOH B 86 786 161 HOH HOH . J 5 HOH B 87 787 162 HOH HOH . J 5 HOH B 88 788 163 HOH HOH . J 5 HOH B 89 789 164 HOH HOH . J 5 HOH B 90 790 171 HOH HOH . J 5 HOH B 91 791 172 HOH HOH . J 5 HOH B 92 792 175 HOH HOH . J 5 HOH B 93 793 179 HOH HOH . J 5 HOH B 94 794 181 HOH HOH . J 5 HOH B 95 795 182 HOH HOH . J 5 HOH B 96 796 185 HOH HOH . J 5 HOH B 97 797 186 HOH HOH . J 5 HOH B 98 798 187 HOH HOH . J 5 HOH B 99 799 192 HOH HOH . J 5 HOH B 100 800 196 HOH HOH . J 5 HOH B 101 801 197 HOH HOH . J 5 HOH B 102 802 198 HOH HOH . J 5 HOH B 103 803 200 HOH HOH . J 5 HOH B 104 804 201 HOH HOH . J 5 HOH B 105 805 204 HOH HOH . J 5 HOH B 106 806 206 HOH HOH . J 5 HOH B 107 807 208 HOH HOH . J 5 HOH B 108 808 210 HOH HOH . J 5 HOH B 109 809 215 HOH HOH . J 5 HOH B 110 810 217 HOH HOH . J 5 HOH B 111 811 219 HOH HOH . J 5 HOH B 112 812 223 HOH HOH . J 5 HOH B 113 813 226 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 49.481 _atom_site.Cartn_y 51.331 _atom_site.Cartn_z 50.041 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 12.01 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 602 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 244 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #