data_4NKI
#
_model_server_result.job_id            1CaW3G4fi_s5Cw74AlzH3w 
_model_server_result.datetime_utc      '2024-11-17 01:27:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4nki 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":302}' 
#
_entry.id    4NKI 
#
_exptl.entry_id    4NKI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4NKI 
_cell.length_a            115.944 
_cell.length_b            115.944 
_cell.length_c            78.92 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4NKI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        95 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
disulf ? disulf2 A SG CYS 147 H CYS 147 1_555 A SG CYS 203 H CYS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf3 B SG CYS 22 L CYS 22 1_555 B SG CYS 90 L CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf4 B SG CYS 138 L CYS 138 1_555 B SG CYS 197 L CYS 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     4NKI 
_atom_sites.fract_transf_matrix[1][1]    0.008625 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008625 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012671 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 EDO H 1 301 1 EDO EDO . 
D 3 EDO H 1 302 2 EDO EDO . 
E 4 HOH H 1 401 2 HOH HOH . 
E 4 HOH H 2 402 4 HOH HOH . 
E 4 HOH H 3 403 5 HOH HOH . 
E 4 HOH H 4 404 6 HOH HOH . 
E 4 HOH H 5 405 11 HOH HOH . 
E 4 HOH H 6 406 14 HOH HOH . 
E 4 HOH H 7 407 15 HOH HOH . 
E 4 HOH H 8 408 16 HOH HOH . 
E 4 HOH H 9 409 17 HOH HOH . 
E 4 HOH H 10 410 19 HOH HOH . 
E 4 HOH H 11 411 20 HOH HOH . 
E 4 HOH H 12 412 21 HOH HOH . 
E 4 HOH H 13 413 23 HOH HOH . 
E 4 HOH H 14 414 25 HOH HOH . 
E 4 HOH H 15 415 26 HOH HOH . 
E 4 HOH H 16 416 27 HOH HOH . 
E 4 HOH H 17 417 32 HOH HOH . 
E 4 HOH H 18 418 33 HOH HOH . 
E 4 HOH H 19 419 34 HOH HOH . 
E 4 HOH H 20 420 35 HOH HOH . 
E 4 HOH H 21 421 36 HOH HOH . 
E 4 HOH H 22 422 38 HOH HOH . 
E 4 HOH H 23 423 44 HOH HOH . 
E 4 HOH H 24 424 45 HOH HOH . 
E 4 HOH H 25 425 46 HOH HOH . 
E 4 HOH H 26 426 48 HOH HOH . 
E 4 HOH H 27 427 50 HOH HOH . 
E 4 HOH H 28 428 52 HOH HOH . 
E 4 HOH H 29 429 54 HOH HOH . 
E 4 HOH H 30 430 55 HOH HOH . 
E 4 HOH H 31 431 57 HOH HOH . 
E 4 HOH H 32 432 58 HOH HOH . 
E 4 HOH H 33 433 60 HOH HOH . 
E 4 HOH H 34 434 64 HOH HOH . 
E 4 HOH H 35 435 65 HOH HOH . 
E 4 HOH H 36 436 67 HOH HOH . 
E 4 HOH H 37 437 69 HOH HOH . 
E 4 HOH H 38 438 70 HOH HOH . 
E 4 HOH H 39 439 73 HOH HOH . 
E 4 HOH H 40 440 74 HOH HOH . 
E 4 HOH H 41 441 75 HOH HOH . 
E 4 HOH H 42 442 76 HOH HOH . 
E 4 HOH H 43 443 79 HOH HOH . 
E 4 HOH H 44 444 81 HOH HOH . 
E 4 HOH H 45 445 83 HOH HOH . 
E 4 HOH H 46 446 84 HOH HOH . 
E 4 HOH H 47 447 85 HOH HOH . 
E 4 HOH H 48 448 86 HOH HOH . 
E 4 HOH H 49 449 88 HOH HOH . 
E 4 HOH H 50 450 89 HOH HOH . 
E 4 HOH H 51 451 91 HOH HOH . 
E 4 HOH H 52 452 92 HOH HOH . 
E 4 HOH H 53 453 93 HOH HOH . 
E 4 HOH H 54 454 95 HOH HOH . 
E 4 HOH H 55 455 96 HOH HOH . 
E 4 HOH H 56 456 97 HOH HOH . 
E 4 HOH H 57 457 99 HOH HOH . 
E 4 HOH H 58 458 101 HOH HOH . 
E 4 HOH H 59 459 104 HOH HOH . 
E 4 HOH H 60 460 107 HOH HOH . 
E 4 HOH H 61 461 108 HOH HOH . 
E 4 HOH H 62 462 110 HOH HOH . 
E 4 HOH H 63 463 112 HOH HOH . 
E 4 HOH H 64 464 114 HOH HOH . 
E 4 HOH H 65 465 118 HOH HOH . 
E 4 HOH H 66 466 119 HOH HOH . 
E 4 HOH H 67 467 122 HOH HOH . 
E 4 HOH H 68 468 123 HOH HOH . 
E 4 HOH H 69 469 124 HOH HOH . 
E 4 HOH H 70 470 126 HOH HOH . 
E 4 HOH H 71 471 127 HOH HOH . 
E 4 HOH H 72 472 129 HOH HOH . 
E 4 HOH H 73 473 130 HOH HOH . 
E 4 HOH H 74 474 133 HOH HOH . 
E 4 HOH H 75 475 137 HOH HOH . 
F 4 HOH L 1 301 1 HOH HOH . 
F 4 HOH L 2 302 3 HOH HOH . 
F 4 HOH L 3 303 7 HOH HOH . 
F 4 HOH L 4 304 8 HOH HOH . 
F 4 HOH L 5 305 9 HOH HOH . 
F 4 HOH L 6 306 10 HOH HOH . 
F 4 HOH L 7 307 12 HOH HOH . 
F 4 HOH L 8 308 13 HOH HOH . 
F 4 HOH L 9 309 18 HOH HOH . 
F 4 HOH L 10 310 22 HOH HOH . 
F 4 HOH L 11 311 24 HOH HOH . 
F 4 HOH L 12 312 28 HOH HOH . 
F 4 HOH L 13 313 29 HOH HOH . 
F 4 HOH L 14 314 30 HOH HOH . 
F 4 HOH L 15 315 31 HOH HOH . 
F 4 HOH L 16 316 37 HOH HOH . 
F 4 HOH L 17 317 39 HOH HOH . 
F 4 HOH L 18 318 40 HOH HOH . 
F 4 HOH L 19 319 41 HOH HOH . 
F 4 HOH L 20 320 42 HOH HOH . 
F 4 HOH L 21 321 43 HOH HOH . 
F 4 HOH L 22 322 47 HOH HOH . 
F 4 HOH L 23 323 49 HOH HOH . 
F 4 HOH L 24 324 51 HOH HOH . 
F 4 HOH L 25 325 53 HOH HOH . 
F 4 HOH L 26 326 56 HOH HOH . 
F 4 HOH L 27 327 59 HOH HOH . 
F 4 HOH L 28 328 61 HOH HOH . 
F 4 HOH L 29 329 62 HOH HOH . 
F 4 HOH L 30 330 63 HOH HOH . 
F 4 HOH L 31 331 66 HOH HOH . 
F 4 HOH L 32 332 68 HOH HOH . 
F 4 HOH L 33 333 71 HOH HOH . 
F 4 HOH L 34 334 72 HOH HOH . 
F 4 HOH L 35 335 77 HOH HOH . 
F 4 HOH L 36 336 78 HOH HOH . 
F 4 HOH L 37 337 80 HOH HOH . 
F 4 HOH L 38 338 82 HOH HOH . 
F 4 HOH L 39 339 87 HOH HOH . 
F 4 HOH L 40 340 90 HOH HOH . 
F 4 HOH L 41 341 94 HOH HOH . 
F 4 HOH L 42 342 98 HOH HOH . 
F 4 HOH L 43 343 100 HOH HOH . 
F 4 HOH L 44 344 102 HOH HOH . 
F 4 HOH L 45 345 103 HOH HOH . 
F 4 HOH L 46 346 105 HOH HOH . 
F 4 HOH L 47 347 106 HOH HOH . 
F 4 HOH L 48 348 109 HOH HOH . 
F 4 HOH L 49 349 111 HOH HOH . 
F 4 HOH L 50 350 113 HOH HOH . 
F 4 HOH L 51 351 115 HOH HOH . 
F 4 HOH L 52 352 116 HOH HOH . 
F 4 HOH L 53 353 117 HOH HOH . 
F 4 HOH L 54 354 120 HOH HOH . 
F 4 HOH L 55 355 121 HOH HOH . 
F 4 HOH L 56 356 128 HOH HOH . 
F 4 HOH L 57 357 131 HOH HOH . 
F 4 HOH L 58 358 132 HOH HOH . 
F 4 HOH L 59 359 134 HOH HOH . 
F 4 HOH L 60 360 135 HOH HOH . 
F 4 HOH L 61 361 136 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . D 3 13.289 47.946 -5.282 1 58.44 ? C1 EDO 302 H 1 
HETATM 2 O O1 EDO . . . D 3 13.673 48.03 -3.889 1 56.97 ? O1 EDO 302 H 1 
HETATM 3 C C2 EDO . . . D 3 13.95 49.068 -6.154 1 61.55 ? C2 EDO 302 H 1 
HETATM 4 O O2 EDO . . . D 3 13.857 48.8 -7.567 1 62.16 ? O2 EDO 302 H 1 
#
_model_server_stats.io_time_ms              78 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           523 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           4 
#