data_4NKX # _model_server_result.job_id NfIk_CZOT-t548ESgBpx1w _model_server_result.datetime_utc '2024-11-28 16:59:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4nkx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":601}' # _entry.id 4NKX # _exptl.entry_id 4NKX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 314.462 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PROGESTERONE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4NKX _cell.length_a 85.934 _cell.length_b 153.036 _cell.length_c 173.243 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4NKX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,M 1 1 B,G,H,N 2 1 C,I,J,O 3 1 D,K,L,P 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 J N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 424 A CYS 442 1_555 E FE HEM . A HEM 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.62 ? metalc ? metalc2 B SG CYS 424 B CYS 442 1_555 G FE HEM . B HEM 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? metalc ? metalc3 C SG CYS 424 C CYS 442 1_555 I FE HEM . C HEM 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.624 ? metalc ? metalc4 D SG CYS 424 D CYS 442 1_555 K FE HEM . D HEM 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? # _chem_comp.formula 'C21 H30 O2' _chem_comp.formula_weight 314.462 _chem_comp.id STR _chem_comp.mon_nstd_flag . _chem_comp.name PROGESTERONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 STR sing 372 n n C1 C10 STR sing 373 n n C1 H11 STR sing 374 n n C1 H12 STR sing 375 n n C2 C3 STR sing 376 n n C2 H21 STR sing 377 n n C2 H22 STR sing 378 n n C3 O3 STR doub 379 n n C3 C4 STR sing 380 n n C4 C5 STR doub 381 n n C4 H4 STR sing 382 n n C5 C6 STR sing 383 n n C5 C10 STR sing 384 n n C6 C7 STR sing 385 n n C6 H61 STR sing 386 n n C6 H62 STR sing 387 n n C7 C8 STR sing 388 n n C7 H71 STR sing 389 n n C7 H72 STR sing 390 n n C8 C9 STR sing 391 n n C8 C14 STR sing 392 n n C8 H8 STR sing 393 n n C9 C10 STR sing 394 n n C9 C11 STR sing 395 n n C9 H9 STR sing 396 n n C10 C19 STR sing 397 n n C11 C12 STR sing 398 n n C11 H111 STR sing 399 n n C11 H112 STR sing 400 n n C12 C13 STR sing 401 n n C12 H121 STR sing 402 n n C12 H122 STR sing 403 n n C13 C14 STR sing 404 n n C13 C17 STR sing 405 n n C13 C18 STR sing 406 n n C14 C15 STR sing 407 n n C14 H14 STR sing 408 n n C15 C16 STR sing 409 n n C15 H151 STR sing 410 n n C15 H152 STR sing 411 n n C16 C17 STR sing 412 n n C16 H161 STR sing 413 n n C16 H162 STR sing 414 n n C17 C20 STR sing 415 n n C17 H17 STR sing 416 n n C18 H181 STR sing 417 n n C18 H182 STR sing 418 n n C18 H183 STR sing 419 n n C19 H191 STR sing 420 n n C19 H192 STR sing 421 n n C19 H193 STR sing 422 n n C20 O20 STR doub 423 n n C20 C21 STR sing 424 n n C21 H211 STR sing 425 n n C21 H212 STR sing 426 n n C21 H213 STR sing 427 n n # _atom_sites.entry_id 4NKX _atom_sites.fract_transf_matrix[1][1] 0.011637 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006534 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005772 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HEM A 1 600 600 HEM HEM . F 3 STR A 1 601 601 STR STR . G 2 HEM B 1 600 600 HEM HEM . H 3 STR B 1 601 601 STR STR . I 2 HEM C 1 600 600 HEM HEM . J 3 STR C 1 601 601 STR STR . K 2 HEM D 1 600 600 HEM HEM . L 3 STR D 1 601 601 STR STR . M 4 HOH A 1 701 1 HOH HOH . M 4 HOH A 2 702 2 HOH HOH . M 4 HOH A 3 703 4 HOH HOH . M 4 HOH A 4 704 5 HOH HOH . M 4 HOH A 5 705 8 HOH HOH . M 4 HOH A 6 706 41 HOH HOH . M 4 HOH A 7 707 46 HOH HOH . M 4 HOH A 8 708 51 HOH HOH . M 4 HOH A 9 709 52 HOH HOH . M 4 HOH A 10 710 64 HOH HOH . M 4 HOH A 11 711 79 HOH HOH . M 4 HOH A 12 712 97 HOH HOH . M 4 HOH A 13 713 98 HOH HOH . M 4 HOH A 14 714 99 HOH HOH . N 4 HOH B 1 701 12 HOH HOH . N 4 HOH B 2 702 13 HOH HOH . N 4 HOH B 3 703 14 HOH HOH . N 4 HOH B 4 704 15 HOH HOH . N 4 HOH B 5 705 21 HOH HOH . N 4 HOH B 6 706 43 HOH HOH . N 4 HOH B 7 707 45 HOH HOH . N 4 HOH B 8 708 50 HOH HOH . N 4 HOH B 9 709 69 HOH HOH . N 4 HOH B 10 710 74 HOH HOH . N 4 HOH B 11 711 80 HOH HOH . N 4 HOH B 12 712 85 HOH HOH . N 4 HOH B 13 713 93 HOH HOH . O 4 HOH C 1 701 22 HOH HOH . O 4 HOH C 2 702 23 HOH HOH . O 4 HOH C 3 703 26 HOH HOH . O 4 HOH C 4 704 28 HOH HOH . O 4 HOH C 5 705 56 HOH HOH . O 4 HOH C 6 706 75 HOH HOH . O 4 HOH C 7 707 82 HOH HOH . O 4 HOH C 8 708 94 HOH HOH . O 4 HOH C 9 709 100 HOH HOH . O 4 HOH C 10 710 101 HOH HOH . P 4 HOH D 1 701 30 HOH HOH . P 4 HOH D 2 702 32 HOH HOH . P 4 HOH D 3 703 35 HOH HOH . P 4 HOH D 4 704 38 HOH HOH . P 4 HOH D 5 705 57 HOH HOH . P 4 HOH D 6 706 90 HOH HOH . P 4 HOH D 7 707 91 HOH HOH . P 4 HOH D 8 708 95 HOH HOH . P 4 HOH D 9 709 102 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 STR . . . H 3 -27.553 31.47 -54.613 1 41.34 ? C1 STR 601 B 1 HETATM 2 C C2 STR . . . H 3 -27.339 29.992 -55.083 1 41.37 ? C2 STR 601 B 1 HETATM 3 C C3 STR . . . H 3 -28.408 29.932 -56.255 1 35.84 ? C3 STR 601 B 1 HETATM 4 O O3 STR . . . H 3 -28.985 28.886 -56.51 1 34.25 ? O3 STR 601 B 1 HETATM 5 C C4 STR . . . H 3 -28.682 31.197 -57.087 1 34.31 ? C4 STR 601 B 1 HETATM 6 C C5 STR . . . H 3 -28.121 32.374 -56.813 1 48.06 ? C5 STR 601 B 1 HETATM 7 C C6 STR . . . H 3 -28.547 33.528 -57.814 1 45.41 ? C6 STR 601 B 1 HETATM 8 C C7 STR . . . H 3 -28.46 34.947 -56.95 1 41.29 ? C7 STR 601 B 1 HETATM 9 C C8 STR . . . H 3 -27.176 34.986 -55.963 1 41.49 ? C8 STR 601 B 1 HETATM 10 C C9 STR . . . H 3 -27.241 33.837 -55.064 1 38.03 ? C9 STR 601 B 1 HETATM 11 C C10 STR . . . H 3 -27.175 32.56 -55.72 1 43.03 ? C10 STR 601 B 1 HETATM 12 C C11 STR . . . H 3 -25.966 34.03 -53.913 1 37.81 ? C11 STR 601 B 1 HETATM 13 C C12 STR . . . H 3 -25.924 35.622 -53.281 1 39.26 ? C12 STR 601 B 1 HETATM 14 C C13 STR . . . H 3 -26.109 36.567 -54.383 1 42.69 ? C13 STR 601 B 1 HETATM 15 C C14 STR . . . H 3 -27.289 36.22 -55.153 1 46.75 ? C14 STR 601 B 1 HETATM 16 C C15 STR . . . H 3 -27.641 37.433 -56.02 1 45.26 ? C15 STR 601 B 1 HETATM 17 C C16 STR . . . H 3 -27.01 38.666 -55.181 1 41.56 ? C16 STR 601 B 1 HETATM 18 C C17 STR . . . H 3 -26.456 37.969 -53.817 1 40.19 ? C17 STR 601 B 1 HETATM 19 C C18 STR . . . H 3 -24.851 36.61 -55.278 1 40.88 ? C18 STR 601 B 1 HETATM 20 C C19 STR . . . H 3 -25.754 32.31 -56.271 1 36.61 ? C19 STR 601 B 1 HETATM 21 C C20 STR . . . H 3 -25.436 38.776 -53.153 1 33.01 ? C20 STR 601 B 1 HETATM 22 O O20 STR . . . H 3 -24.774 39.555 -53.79 1 42.13 ? O20 STR 601 B 1 HETATM 23 C C21 STR . . . H 3 -25.214 38.693 -51.645 1 36.22 ? C21 STR 601 B 1 HETATM 24 H H11 STR . . . H 3 -27.01 31.625 -53.817 1 49.61 ? H11 STR 601 B 1 HETATM 25 H H12 STR . . . H 3 -28.491 31.583 -54.366 1 49.61 ? H12 STR 601 B 1 HETATM 26 H H21 STR . . . H 3 -27.549 29.309 -54.417 1 49.64 ? H21 STR 601 B 1 HETATM 27 H H22 STR . . . H 3 -26.432 29.915 -55.436 1 49.64 ? H22 STR 601 B 1 HETATM 28 H H4 STR . . . H 3 -29.3 31.136 -57.839 1 41.17 ? H4 STR 601 B 1 HETATM 29 H H61 STR . . . H 3 -29.412 33.471 -58.262 1 54.49 ? H61 STR 601 B 1 HETATM 30 H H62 STR . . . H 3 -27.942 33.497 -58.579 1 54.49 ? H62 STR 601 B 1 HETATM 31 H H71 STR . . . H 3 -29.28 35.064 -56.433 1 49.54 ? H71 STR 601 B 1 HETATM 32 H H72 STR . . . H 3 -28.376 35.686 -57.581 1 49.54 ? H72 STR 601 B 1 HETATM 33 H H8 STR . . . H 3 -26.345 34.982 -56.474 1 49.79 ? H8 STR 601 B 1 HETATM 34 H H9 STR . . . H 3 -28.089 33.881 -54.583 1 45.64 ? H9 STR 601 B 1 HETATM 35 H H111 STR . . . H 3 -26.103 33.401 -53.179 1 45.37 ? H111 STR 601 B 1 HETATM 36 H H112 STR . . . H 3 -25.112 33.835 -54.344 1 45.37 ? H112 STR 601 B 1 HETATM 37 H H121 STR . . . H 3 -26.639 35.735 -52.626 1 47.11 ? H121 STR 601 B 1 HETATM 38 H H122 STR . . . H 3 -25.061 35.783 -52.855 1 47.11 ? H122 STR 601 B 1 HETATM 39 H H14 STR . . . H 3 -28.022 36.087 -54.522 1 56.09 ? H14 STR 601 B 1 HETATM 40 H H151 STR . . . H 3 -28.608 37.534 -56.104 1 54.31 ? H151 STR 601 B 1 HETATM 41 H H152 STR . . . H 3 -27.228 37.369 -56.902 1 54.31 ? H152 STR 601 B 1 HETATM 42 H H161 STR . . . H 3 -26.28 39.078 -55.681 1 49.87 ? H161 STR 601 B 1 HETATM 43 H H162 STR . . . H 3 -27.697 39.33 -54.982 1 49.87 ? H162 STR 601 B 1 HETATM 44 H H17 STR . . . H 3 -27.143 37.922 -53.125 1 48.22 ? H17 STR 601 B 1 HETATM 45 H H181 STR . . . H 3 -24.546 35.699 -55.454 1 49.05 ? H181 STR 601 B 1 HETATM 46 H H182 STR . . . H 3 -25.066 37.05 -56.122 1 49.05 ? H182 STR 601 B 1 HETATM 47 H H183 STR . . . H 3 -24.144 37.106 -54.823 1 49.05 ? H183 STR 601 B 1 HETATM 48 H H191 STR . . . H 3 -25.808 31.747 -57.066 1 43.93 ? H191 STR 601 B 1 HETATM 49 H H192 STR . . . H 3 -25.216 31.862 -55.591 1 43.93 ? H192 STR 601 B 1 HETATM 50 H H193 STR . . . H 3 -25.34 33.163 -56.504 1 43.93 ? H193 STR 601 B 1 HETATM 51 H H211 STR . . . H 3 -26.015 39.001 -51.181 1 43.47 ? H211 STR 601 B 1 HETATM 52 H H212 STR . . . H 3 -24.456 39.256 -51.396 1 43.47 ? H212 STR 601 B 1 HETATM 53 H H213 STR . . . H 3 -25.028 37.768 -51.394 1 43.47 ? H213 STR 601 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 53 #