data_4NKZ
#
_model_server_result.job_id            Km4xeY-H1Vsd_rVIHrpJLg 
_model_server_result.datetime_utc      '2024-10-12 06:23:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4nkz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":601}' 
#
_entry.id    4NKZ 
#
_exptl.entry_id    4NKZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              332.477 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (3alpha,8alpha)-3,17-dihydroxypregn-5-en-20-one 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4NKZ 
_cell.length_a            85.82 
_cell.length_b            151.093 
_cell.length_c            170.342 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4NKZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,M 1 1 
B,G,H,N 2 1 
C,I,J 3 1 
D,K,L,O 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 424 A CYS 442 1_555 E FE HEM . A HEM 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.697 ? 
metalc ? metalc2 B SG CYS 424 B CYS 442 1_555 G FE HEM . B HEM 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.658 ? 
metalc ? metalc3 C SG CYS 424 C CYS 442 1_555 I FE HEM . C HEM 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? 
metalc ? metalc4 D SG CYS 424 D CYS 442 1_555 K FE HEM . D HEM 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? 
#
_chem_comp.formula           'C21 H32 O3' 
_chem_comp.formula_weight    332.477 
_chem_comp.id                LZZ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (3alpha,8alpha)-3,17-dihydroxypregn-5-en-20-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     17-Hydroxypregnenolone 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAE CAF LZZ sing 300 n n 
CAE CAC LZZ sing 301 n n 
CAG CAH LZZ sing 302 n n 
CAG CAF LZZ doub 303 n n 
CAH CAI LZZ sing 304 n n 
CAF CAV LZZ sing 305 n n 
CAW CAV LZZ sing 306 n n 
CAK CAL LZZ sing 307 n n 
CAK CAJ LZZ sing 308 n n 
OAD CAC LZZ sing 309 n n 
CAI CAJ LZZ sing 310 n n 
CAI CAU LZZ sing 311 n n 
CAC CAB LZZ sing 312 n n 
CAV CAU LZZ sing 313 n n 
CAV CAA LZZ sing 314 n n 
CAL CAM LZZ sing 315 n n 
CAR CAQ LZZ sing 316 n n 
CAJ CAQ LZZ sing 317 n n 
CAB CAA LZZ sing 318 n n 
CAU CAT LZZ sing 319 n n 
CAQ CAM LZZ sing 320 n n 
CAQ CAS LZZ sing 321 n n 
CAT CAS LZZ sing 322 n n 
CAM CAN LZZ sing 323 n n 
CAM OAX LZZ sing 324 n n 
OAO CAN LZZ doub 325 n n 
CAN CAP LZZ sing 326 n n 
CAR HAU LZZ sing 327 n n 
CAR HAV LZZ sing 328 n n 
CAR HAT LZZ sing 329 n n 
CAS HAX LZZ sing 330 n n 
CAS HAW LZZ sing 331 n n 
CAT HAY LZZ sing 332 n n 
CAT HAZ LZZ sing 333 n n 
CAU HA0 LZZ sing 334 n n 
CAW HA2 LZZ sing 335 n n 
CAW HA3 LZZ sing 336 n n 
CAW HA1 LZZ sing 337 n n 
CAA HAB LZZ sing 338 n n 
CAA HAA LZZ sing 339 n n 
CAB HAC LZZ sing 340 n n 
CAB HAD LZZ sing 341 n n 
CAC HAE LZZ sing 342 n n 
OAD HA4 LZZ sing 343 n n 
CAE HAG LZZ sing 344 n n 
CAE HAF LZZ sing 345 n n 
CAG HAH LZZ sing 346 n n 
CAH HAI LZZ sing 347 n n 
CAH HAJ LZZ sing 348 n n 
CAI HAK LZZ sing 349 n n 
CAJ HAL LZZ sing 350 n n 
CAK HAN LZZ sing 351 n n 
CAK HAM LZZ sing 352 n n 
CAL HAO LZZ sing 353 n n 
CAL HAP LZZ sing 354 n n 
OAX HA5 LZZ sing 355 n n 
CAP HAR LZZ sing 356 n n 
CAP HAQ LZZ sing 357 n n 
CAP HAS LZZ sing 358 n n 
#
_atom_sites.entry_id                     4NKZ 
_atom_sites.fract_transf_matrix[1][1]    0.011652 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006618 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005871 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 HEM A 1 600 600 HEM HEM . 
F 3 LZZ A 1 601 601 LZZ LZZ . 
G 2 HEM B 1 600 600 HEM HEM . 
H 3 LZZ B 1 601 601 LZZ LZZ . 
I 2 HEM C 1 600 600 HEM HEM . 
J 3 LZZ C 1 601 601 LZZ LZZ . 
K 2 HEM D 1 600 600 HEM HEM . 
L 3 LZZ D 1 601 601 LZZ LZZ . 
M 4 HOH A 1 701 3 HOH HOH . 
M 4 HOH A 2 702 8 HOH HOH . 
N 4 HOH B 1 701 2 HOH HOH . 
N 4 HOH B 2 702 4 HOH HOH . 
N 4 HOH B 3 703 5 HOH HOH . 
N 4 HOH B 4 704 9 HOH HOH . 
N 4 HOH B 5 705 10 HOH HOH . 
O 4 HOH D 1 701 7 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAR LZZ . . . F 3 25.592 -4.953 201.397 1 63.96 ? CAR LZZ 601 A 1 
HETATM 2 C CAQ LZZ . . . F 3 26.851 -4.922 202.253 1 69.11 ? CAQ LZZ 601 A 1 
HETATM 3 C CAS LZZ . . . F 3 26.68 -3.823 203.355 1 64.78 ? CAS LZZ 601 A 1 
HETATM 4 C CAT LZZ . . . F 3 26.605 -2.477 202.641 1 75.65 ? CAT LZZ 601 A 1 
HETATM 5 C CAU LZZ . . . F 3 27.883 -2.166 201.797 1 68.77 ? CAU LZZ 601 A 1 
HETATM 6 C CAV LZZ . . . F 3 27.77 -0.821 201.124 1 55.45 ? CAV LZZ 601 A 1 
HETATM 7 C CAW LZZ . . . F 3 26.478 -0.674 200.364 1 59.37 ? CAW LZZ 601 A 1 
HETATM 8 C CAA LZZ . . . F 3 27.851 0.296 202.16 1 64.53 ? CAA LZZ 601 A 1 
HETATM 9 C CAB LZZ . . . F 3 28.11 1.602 201.488 1 65.34 ? CAB LZZ 601 A 1 
HETATM 10 C CAC LZZ . . . F 3 29.458 1.546 200.852 1 73.76 ? CAC LZZ 601 A 1 
HETATM 11 O OAD LZZ . . . F 3 29.919 2.876 200.594 1 67.65 ? OAD LZZ 601 A 1 
HETATM 12 C CAE LZZ . . . F 3 29.377 0.74 199.578 1 68.93 ? CAE LZZ 601 A 1 
HETATM 13 C CAF LZZ . . . F 3 28.996 -0.651 200.096 1 56.94 ? CAF LZZ 601 A 1 
HETATM 14 C CAG LZZ . . . F 3 29.714 -1.761 199.66 1 72.04 ? CAG LZZ 601 A 1 
HETATM 15 C CAH LZZ . . . F 3 29.461 -3.17 200.083 1 69.49 ? CAH LZZ 601 A 1 
HETATM 16 C CAI LZZ . . . F 3 28.115 -3.264 200.762 1 65.64 ? CAI LZZ 601 A 1 
HETATM 17 C CAJ LZZ . . . F 3 28.098 -4.568 201.486 1 62.71 ? CAJ LZZ 601 A 1 
HETATM 18 C CAK LZZ . . . F 3 28.214 -5.777 200.511 1 67.64 ? CAK LZZ 601 A 1 
HETATM 19 C CAL LZZ . . . F 3 27.787 -6.836 201.314 1 62.49 ? CAL LZZ 601 A 1 
HETATM 20 C CAM LZZ . . . F 3 27.221 -6.169 202.718 1 65.15 ? CAM LZZ 601 A 1 
HETATM 21 O OAX LZZ . . . F 3 28.194 -6.213 203.724 1 67.99 ? OAX LZZ 601 A 1 
HETATM 22 C CAN LZZ . . . F 3 26.128 -6.953 203.385 1 66.09 ? CAN LZZ 601 A 1 
HETATM 23 O OAO LZZ . . . F 3 25.468 -7.797 202.798 1 63.52 ? OAO LZZ 601 A 1 
HETATM 24 C CAP LZZ . . . F 3 25.844 -6.729 204.861 1 68.72 ? CAP LZZ 601 A 1 
HETATM 25 H HAU LZZ . . . F 3 25.704 -4.355 200.634 1 76.75 ? HAU LZZ 601 A 1 
HETATM 26 H HAV LZZ . . . F 3 25.436 -5.862 201.077 1 76.75 ? HAV LZZ 601 A 1 
HETATM 27 H HAT LZZ . . . F 3 24.828 -4.661 201.93 1 76.75 ? HAT LZZ 601 A 1 
HETATM 28 H HAX LZZ . . . F 3 25.857 -3.98 203.857 1 77.73 ? HAX LZZ 601 A 1 
HETATM 29 H HAW LZZ . . . F 3 27.446 -3.837 203.959 1 77.73 ? HAW LZZ 601 A 1 
HETATM 30 H HAY LZZ . . . F 3 25.83 -2.48 202.048 1 90.78 ? HAY LZZ 601 A 1 
HETATM 31 H HAZ LZZ . . . F 3 26.489 -1.774 203.308 1 90.78 ? HAZ LZZ 601 A 1 
HETATM 32 H HA0 LZZ . . . F 3 28.651 -2.145 202.399 1 82.53 ? HA0 LZZ 601 A 1 
HETATM 33 H HA2 LZZ . . . F 3 26.561 0.052 199.717 1 71.24 ? HA2 LZZ 601 A 1 
HETATM 34 H HA3 LZZ . . . F 3 26.28 -1.506 199.895 1 71.24 ? HA3 LZZ 601 A 1 
HETATM 35 H HA1 LZZ . . . F 3 25.755 -0.472 200.987 1 71.24 ? HA1 LZZ 601 A 1 
HETATM 36 H HAB LZZ . . . F 3 27.006 0.345 202.647 1 77.44 ? HAB LZZ 601 A 1 
HETATM 37 H HAA LZZ . . . F 3 28.575 0.105 202.786 1 77.44 ? HAA LZZ 601 A 1 
HETATM 38 H HAC LZZ . . . F 3 27.43 1.761 200.806 1 78.4 ? HAC LZZ 601 A 1 
HETATM 39 H HAD LZZ . . . F 3 28.088 2.32 202.148 1 78.4 ? HAD LZZ 601 A 1 
HETATM 40 H HAE LZZ . . . F 3 30.08 1.109 201.465 1 88.51 ? HAE LZZ 601 A 1 
HETATM 41 H HA4 LZZ . . . F 3 30.729 2.982 200.941 1 81.18 ? HA4 LZZ 601 A 1 
HETATM 42 H HAG LZZ . . . F 3 28.683 1.007 198.945 1 82.71 ? HAG LZZ 601 A 1 
HETATM 43 H HAF LZZ . . . F 3 30.157 0.82 198.997 1 82.71 ? HAF LZZ 601 A 1 
HETATM 44 H HAH LZZ . . . F 3 30.45 -1.604 199.039 1 86.44 ? HAH LZZ 601 A 1 
HETATM 45 H HAI LZZ . . . F 3 29.605 -3.817 199.367 1 83.39 ? HAI LZZ 601 A 1 
HETATM 46 H HAJ LZZ . . . F 3 30.115 -3.525 200.715 1 83.39 ? HAJ LZZ 601 A 1 
HETATM 47 H HAK LZZ . . . F 3 27.404 -3.246 200.093 1 78.77 ? HAK LZZ 601 A 1 
HETATM 48 H HAL LZZ . . . F 3 28.856 -4.588 202.101 1 75.25 ? HAL LZZ 601 A 1 
HETATM 49 H HAN LZZ . . . F 3 27.626 -5.664 199.74 1 81.17 ? HAN LZZ 601 A 1 
HETATM 50 H HAM LZZ . . . F 3 29.139 -5.907 200.23 1 81.17 ? HAM LZZ 601 A 1 
HETATM 51 H HAO LZZ . . . F 3 27.068 -7.323 200.867 1 74.98 ? HAO LZZ 601 A 1 
HETATM 52 H HAP LZZ . . . F 3 28.533 -7.435 201.503 1 74.98 ? HAP LZZ 601 A 1 
HETATM 53 H HA5 LZZ . . . F 3 28.521 -7.036 203.785 1 81.59 ? HA5 LZZ 601 A 1 
HETATM 54 H HAR LZZ . . . F 3 24.902 -6.91 205.042 1 82.47 ? HAR LZZ 601 A 1 
HETATM 55 H HAQ LZZ . . . F 3 26.049 -5.804 205.096 1 82.47 ? HAQ LZZ 601 A 1 
HETATM 56 H HAS LZZ . . . F 3 26.398 -7.33 205.394 1 82.47 ? HAS LZZ 601 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    31 
_model_server_stats.query_time_ms           264 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           56 
#