data_4NKZ
#
_model_server_result.job_id            m1NofIAVi_PejAzTdMz5dA 
_model_server_result.datetime_utc      '2024-10-12 06:17:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4nkz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":601}' 
#
_entry.id    4NKZ 
#
_exptl.entry_id    4NKZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              332.477 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (3alpha,8alpha)-3,17-dihydroxypregn-5-en-20-one 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4NKZ 
_cell.length_a            85.82 
_cell.length_b            151.093 
_cell.length_c            170.342 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4NKZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,M 1 1 
B,G,H,N 2 1 
C,I,J 3 1 
D,K,L,O 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 424 A CYS 442 1_555 E FE HEM . A HEM 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.697 ? 
metalc ? metalc2 B SG CYS 424 B CYS 442 1_555 G FE HEM . B HEM 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.658 ? 
metalc ? metalc3 C SG CYS 424 C CYS 442 1_555 I FE HEM . C HEM 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? 
metalc ? metalc4 D SG CYS 424 D CYS 442 1_555 K FE HEM . D HEM 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? 
#
_chem_comp.formula           'C21 H32 O3' 
_chem_comp.formula_weight    332.477 
_chem_comp.id                LZZ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (3alpha,8alpha)-3,17-dihydroxypregn-5-en-20-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     17-Hydroxypregnenolone 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAE CAF LZZ sing 300 n n 
CAE CAC LZZ sing 301 n n 
CAG CAH LZZ sing 302 n n 
CAG CAF LZZ doub 303 n n 
CAH CAI LZZ sing 304 n n 
CAF CAV LZZ sing 305 n n 
CAW CAV LZZ sing 306 n n 
CAK CAL LZZ sing 307 n n 
CAK CAJ LZZ sing 308 n n 
OAD CAC LZZ sing 309 n n 
CAI CAJ LZZ sing 310 n n 
CAI CAU LZZ sing 311 n n 
CAC CAB LZZ sing 312 n n 
CAV CAU LZZ sing 313 n n 
CAV CAA LZZ sing 314 n n 
CAL CAM LZZ sing 315 n n 
CAR CAQ LZZ sing 316 n n 
CAJ CAQ LZZ sing 317 n n 
CAB CAA LZZ sing 318 n n 
CAU CAT LZZ sing 319 n n 
CAQ CAM LZZ sing 320 n n 
CAQ CAS LZZ sing 321 n n 
CAT CAS LZZ sing 322 n n 
CAM CAN LZZ sing 323 n n 
CAM OAX LZZ sing 324 n n 
OAO CAN LZZ doub 325 n n 
CAN CAP LZZ sing 326 n n 
CAR HAU LZZ sing 327 n n 
CAR HAV LZZ sing 328 n n 
CAR HAT LZZ sing 329 n n 
CAS HAX LZZ sing 330 n n 
CAS HAW LZZ sing 331 n n 
CAT HAY LZZ sing 332 n n 
CAT HAZ LZZ sing 333 n n 
CAU HA0 LZZ sing 334 n n 
CAW HA2 LZZ sing 335 n n 
CAW HA3 LZZ sing 336 n n 
CAW HA1 LZZ sing 337 n n 
CAA HAB LZZ sing 338 n n 
CAA HAA LZZ sing 339 n n 
CAB HAC LZZ sing 340 n n 
CAB HAD LZZ sing 341 n n 
CAC HAE LZZ sing 342 n n 
OAD HA4 LZZ sing 343 n n 
CAE HAG LZZ sing 344 n n 
CAE HAF LZZ sing 345 n n 
CAG HAH LZZ sing 346 n n 
CAH HAI LZZ sing 347 n n 
CAH HAJ LZZ sing 348 n n 
CAI HAK LZZ sing 349 n n 
CAJ HAL LZZ sing 350 n n 
CAK HAN LZZ sing 351 n n 
CAK HAM LZZ sing 352 n n 
CAL HAO LZZ sing 353 n n 
CAL HAP LZZ sing 354 n n 
OAX HA5 LZZ sing 355 n n 
CAP HAR LZZ sing 356 n n 
CAP HAQ LZZ sing 357 n n 
CAP HAS LZZ sing 358 n n 
#
_atom_sites.entry_id                     4NKZ 
_atom_sites.fract_transf_matrix[1][1]    0.011652 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006618 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005871 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 HEM A 1 600 600 HEM HEM . 
F 3 LZZ A 1 601 601 LZZ LZZ . 
G 2 HEM B 1 600 600 HEM HEM . 
H 3 LZZ B 1 601 601 LZZ LZZ . 
I 2 HEM C 1 600 600 HEM HEM . 
J 3 LZZ C 1 601 601 LZZ LZZ . 
K 2 HEM D 1 600 600 HEM HEM . 
L 3 LZZ D 1 601 601 LZZ LZZ . 
M 4 HOH A 1 701 3 HOH HOH . 
M 4 HOH A 2 702 8 HOH HOH . 
N 4 HOH B 1 701 2 HOH HOH . 
N 4 HOH B 2 702 4 HOH HOH . 
N 4 HOH B 3 703 5 HOH HOH . 
N 4 HOH B 4 704 9 HOH HOH . 
N 4 HOH B 5 705 10 HOH HOH . 
O 4 HOH D 1 701 7 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAR LZZ . . . L 3 -7.5 20.469 192.829 1 57.45 ? CAR LZZ 601 D 1 
HETATM 2 C CAQ LZZ . . . L 3 -7.795 21.934 192.647 1 56.57 ? CAQ LZZ 601 D 1 
HETATM 3 C CAS LZZ . . . L 3 -6.622 22.585 191.843 1 58.82 ? CAS LZZ 601 D 1 
HETATM 4 C CAT LZZ . . . L 3 -5.373 22.57 192.701 1 60.27 ? CAT LZZ 601 D 1 
HETATM 5 C CAU LZZ . . . L 3 -5.6 23.312 194.046 1 56.78 ? CAU LZZ 601 D 1 
HETATM 6 C CAV LZZ . . . L 3 -4.324 23.348 194.844 1 58.66 ? CAV LZZ 601 D 1 
HETATM 7 C CAW LZZ . . . L 3 -3.738 21.977 195.066 1 61.96 ? CAW LZZ 601 D 1 
HETATM 8 C CAA LZZ . . . L 3 -3.29 24.195 194.1 1 62.76 ? CAA LZZ 601 D 1 
HETATM 9 C CAB LZZ . . . L 3 -2.245 24.651 195.057 1 72.21 ? CAB LZZ 601 D 1 
HETATM 10 C CAC LZZ . . . L 3 -2.858 25.524 196.108 1 74.02 ? CAC LZZ 601 D 1 
HETATM 11 O OAD LZZ . . . L 3 -1.807 26.302 196.683 1 66.22 ? OAD LZZ 601 D 1 
HETATM 12 C CAE LZZ . . . L 3 -3.564 24.67 197.138 1 66.27 ? CAE LZZ 601 D 1 
HETATM 13 C CAF LZZ . . . L 3 -4.66 23.992 196.294 1 63.5 ? CAF LZZ 601 D 1 
HETATM 14 C CAG LZZ . . . L 3 -5.963 23.925 196.8 1 63.85 ? CAG LZZ 601 D 1 
HETATM 15 C CAH LZZ . . . L 3 -7.136 23.307 196.109 1 62.1 ? CAH LZZ 601 D 1 
HETATM 16 C CAI LZZ . . . L 3 -6.728 22.636 194.815 1 52.21 ? CAI LZZ 601 D 1 
HETATM 17 C CAJ LZZ . . . L 3 -7.915 22.709 193.921 1 56.46 ? CAJ LZZ 601 D 1 
HETATM 18 C CAK LZZ . . . L 3 -9.217 22.128 194.558 1 58.25 ? CAK LZZ 601 D 1 
HETATM 19 C CAL LZZ . . . L 3 -10.017 21.935 193.434 1 58.18 ? CAL LZZ 601 D 1 
HETATM 20 C CAM LZZ . . . L 3 -9.041 22.132 192.114 1 61.33 ? CAM LZZ 601 D 1 
HETATM 21 O OAX LZZ . . . L 3 -9.267 23.362 191.485 1 63.68 ? OAX LZZ 601 D 1 
HETATM 22 C CAN LZZ . . . L 3 -9.363 21.181 191.016 1 64.55 ? CAN LZZ 601 D 1 
HETATM 23 O OAO LZZ . . . L 3 -10.007 20.184 191.24 1 65.35 ? OAO LZZ 601 D 1 
HETATM 24 C CAP LZZ . . . L 3 -8.93 21.452 189.595 1 68.61 ? CAP LZZ 601 D 1 
HETATM 25 H HAU LZZ . . . L 3 -8.299 20.016 193.16 1 68.94 ? HAU LZZ 601 D 1 
HETATM 26 H HAV LZZ . . . L 3 -7.237 20.08 191.973 1 68.94 ? HAV LZZ 601 D 1 
HETATM 27 H HAT LZZ . . . L 3 -6.774 20.36 193.472 1 68.94 ? HAT LZZ 601 D 1 
HETATM 28 H HAX LZZ . . . L 3 -6.464 22.079 191.024 1 70.58 ? HAX LZZ 601 D 1 
HETATM 29 H HAW LZZ . . . L 3 -6.854 23.507 191.619 1 70.58 ? HAW LZZ 601 D 1 
HETATM 30 H HAY LZZ . . . L 3 -4.646 23.003 192.214 1 72.32 ? HAY LZZ 601 D 1 
HETATM 31 H HAZ LZZ . . . L 3 -5.127 21.644 192.887 1 72.32 ? HAZ LZZ 601 D 1 
HETATM 32 H HA0 LZZ . . . L 3 -5.867 24.23 193.85 1 68.13 ? HA0 LZZ 601 D 1 
HETATM 33 H HA2 LZZ . . . L 3 -4.447 21.357 195.321 1 74.35 ? HA2 LZZ 601 D 1 
HETATM 34 H HA3 LZZ . . . L 3 -3.071 22.019 195.778 1 74.35 ? HA3 LZZ 601 D 1 
HETATM 35 H HA1 LZZ . . . L 3 -3.315 21.667 194.243 1 74.35 ? HA1 LZZ 601 D 1 
HETATM 36 H HAB LZZ . . . L 3 -2.876 23.66 193.397 1 75.32 ? HAB LZZ 601 D 1 
HETATM 37 H HAA LZZ . . . L 3 -3.729 24.971 193.703 1 75.32 ? HAA LZZ 601 D 1 
HETATM 38 H HAC LZZ . . . L 3 -1.833 23.874 195.481 1 86.65 ? HAC LZZ 601 D 1 
HETATM 39 H HAD LZZ . . . L 3 -1.563 25.156 194.575 1 86.65 ? HAD LZZ 601 D 1 
HETATM 40 H HAE LZZ . . . L 3 -3.507 26.122 195.689 1 88.83 ? HAE LZZ 601 D 1 
HETATM 41 H HA4 LZZ . . . L 3 -2.064 27.15 196.743 1 79.47 ? HA4 LZZ 601 D 1 
HETATM 42 H HAG LZZ . . . L 3 -3.033 23.956 197.539 1 79.52 ? HAG LZZ 601 D 1 
HETATM 43 H HAF LZZ . . . L 3 -3.829 25.143 197.949 1 79.52 ? HAF LZZ 601 D 1 
HETATM 44 H HAH LZZ . . . L 3 -6.122 24.326 197.675 1 76.62 ? HAH LZZ 601 D 1 
HETATM 45 H HAI LZZ . . . L 3 -7.894 23.918 196.03 1 74.52 ? HAI LZZ 601 D 1 
HETATM 46 H HAJ LZZ . . . L 3 -7.584 22.617 196.634 1 74.52 ? HAJ LZZ 601 D 1 
HETATM 47 H HAK LZZ . . . L 3 -6.499 21.702 194.985 1 62.65 ? HAK LZZ 601 D 1 
HETATM 48 H HAL LZZ . . . L 3 -8.072 23.646 193.698 1 67.76 ? HAL LZZ 601 D 1 
HETATM 49 H HAN LZZ . . . L 3 -9.04 21.282 195.01 1 69.9 ? HAN LZZ 601 D 1 
HETATM 50 H HAM LZZ . . . L 3 -9.623 22.774 195.167 1 69.9 ? HAM LZZ 601 D 1 
HETATM 51 H HAO LZZ . . . L 3 -10.386 21.032 193.44 1 69.82 ? HAO LZZ 601 D 1 
HETATM 52 H HAP LZZ . . . L 3 -10.738 22.593 193.419 1 69.82 ? HAP LZZ 601 D 1 
HETATM 53 H HA5 LZZ . . . L 3 -10.137 23.463 191.334 1 76.41 ? HA5 LZZ 601 D 1 
HETATM 54 H HAR LZZ . . . L 3 -8.095 21.957 189.6 1 82.33 ? HAR LZZ 601 D 1 
HETATM 55 H HAQ LZZ . . . L 3 -8.796 20.605 189.13 1 82.33 ? HAQ LZZ 601 D 1 
HETATM 56 H HAS LZZ . . . L 3 -9.62 21.968 189.138 1 82.33 ? HAS LZZ 601 D 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    60 
_model_server_stats.query_time_ms           327 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           56 
#