data_4NLD # _model_server_result.job_id mzrxEUlSj_Wb57466YfLyQ _model_server_result.datetime_utc '2025-02-28 12:48:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4nld # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":607}' # _entry.id 4NLD # _exptl.entry_id 4NLD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.369 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'octyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4NLD _cell.length_a 73 _cell.length_b 120.6 _cell.length_c 201.5 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4NLD _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 I N N # _chem_comp.formula 'C14 H28 O6' _chem_comp.formula_weight 292.369 _chem_comp.id BOG _chem_comp.mon_nstd_flag n _chem_comp.name 'octyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BOG sing 221 n n C1 C2 BOG sing 222 n n C1 O5 BOG sing 223 n n C1 H1 BOG sing 224 n n O1 C1' BOG sing 225 n n C2 O2 BOG sing 226 n n C2 C3 BOG sing 227 n n C2 H2 BOG sing 228 n n O2 HO2 BOG sing 229 n n C3 O3 BOG sing 230 n n C3 C4 BOG sing 231 n n C3 H3 BOG sing 232 n n O3 HO3 BOG sing 233 n n C4 O4 BOG sing 234 n n C4 C5 BOG sing 235 n n C4 H4 BOG sing 236 n n O4 HO4 BOG sing 237 n n C5 O5 BOG sing 238 n n C5 C6 BOG sing 239 n n C5 H5 BOG sing 240 n n C6 O6 BOG sing 241 n n C6 H61 BOG sing 242 n n C6 H62 BOG sing 243 n n O6 HO6 BOG sing 244 n n C1' C2' BOG sing 245 n n C1' "H1'1" BOG sing 246 n n C1' "H1'2" BOG sing 247 n n C2' C3' BOG sing 248 n n C2' "H2'1" BOG sing 249 n n C2' "H2'2" BOG sing 250 n n C3' C4' BOG sing 251 n n C3' "H3'1" BOG sing 252 n n C3' "H3'2" BOG sing 253 n n C4' C5' BOG sing 254 n n C4' "H4'1" BOG sing 255 n n C4' "H4'2" BOG sing 256 n n C5' C6' BOG sing 257 n n C5' "H5'1" BOG sing 258 n n C5' "H5'2" BOG sing 259 n n C6' C7' BOG sing 260 n n C6' "H6'1" BOG sing 261 n n C6' "H6'2" BOG sing 262 n n C7' C8' BOG sing 263 n n C7' "H7'1" BOG sing 264 n n C7' "H7'2" BOG sing 265 n n C8' "H8'1" BOG sing 266 n n C8' "H8'2" BOG sing 267 n n C8' "H8'3" BOG sing 268 n n # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.identifier b-octylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 4NLD _atom_sites.fract_transf_matrix[1][1] 0.013699 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008292 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004963 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 2N7 A 1 601 1 2N7 LG1 . C 3 2N5 A 1 602 1 2N5 LG2 . D 4 SO4 A 1 603 1 SO4 SO4 . E 4 SO4 A 1 604 2 SO4 SO4 . F 4 SO4 A 1 605 3 SO4 SO4 . G 4 SO4 A 1 606 4 SO4 SO4 . H 5 BOG A 1 607 5 BOG BOG . I 5 BOG A 1 608 6 BOG BOG . J 6 HOH A 1 701 1 HOH HOH . J 6 HOH A 2 702 2 HOH HOH . J 6 HOH A 3 703 3 HOH HOH . J 6 HOH A 4 704 4 HOH HOH . J 6 HOH A 5 705 5 HOH HOH . J 6 HOH A 6 706 6 HOH HOH . J 6 HOH A 7 707 7 HOH HOH . J 6 HOH A 8 708 8 HOH HOH . J 6 HOH A 9 709 9 HOH HOH . J 6 HOH A 10 710 10 HOH HOH . J 6 HOH A 11 711 11 HOH HOH . J 6 HOH A 12 712 12 HOH HOH . J 6 HOH A 13 713 13 HOH HOH . J 6 HOH A 14 714 14 HOH HOH . J 6 HOH A 15 715 15 HOH HOH . J 6 HOH A 16 716 16 HOH HOH . J 6 HOH A 17 717 17 HOH HOH . J 6 HOH A 18 718 18 HOH HOH . J 6 HOH A 19 719 19 HOH HOH . J 6 HOH A 20 720 20 HOH HOH . J 6 HOH A 21 721 21 HOH HOH . J 6 HOH A 22 722 22 HOH HOH . J 6 HOH A 23 723 23 HOH HOH . J 6 HOH A 24 724 24 HOH HOH . J 6 HOH A 25 725 25 HOH HOH . J 6 HOH A 26 726 26 HOH HOH . J 6 HOH A 27 727 27 HOH HOH . J 6 HOH A 28 728 28 HOH HOH . J 6 HOH A 29 729 29 HOH HOH . J 6 HOH A 30 730 30 HOH HOH . J 6 HOH A 31 731 31 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BOG . . . H 5 30.951 -3.681 57.387 1 61.89 ? C1 BOG 607 A 1 HETATM 2 O O1 BOG . . . H 5 31.095 -2.321 57.058 1 63.59 ? O1 BOG 607 A 1 HETATM 3 C C2 BOG . . . H 5 30.164 -3.787 58.694 1 60.24 ? C2 BOG 607 A 1 HETATM 4 O O2 BOG . . . H 5 30.901 -3.213 59.772 1 59.28 ? O2 BOG 607 A 1 HETATM 5 C C3 BOG . . . H 5 29.83 -5.246 59.012 1 57.43 ? C3 BOG 607 A 1 HETATM 6 O O3 BOG . . . H 5 28.953 -5.334 60.132 1 52.68 ? O3 BOG 607 A 1 HETATM 7 C C4 BOG . . . H 5 29.209 -5.962 57.815 1 57.84 ? C4 BOG 607 A 1 HETATM 8 O O4 BOG . . . H 5 29.172 -7.359 58.076 1 58.17 ? O4 BOG 607 A 1 HETATM 9 C C5 BOG . . . H 5 30.053 -5.746 56.56 1 60.54 ? C5 BOG 607 A 1 HETATM 10 O O5 BOG . . . H 5 30.259 -4.34 56.335 1 62.44 ? O5 BOG 607 A 1 HETATM 11 C C6 BOG . . . H 5 29.446 -6.33 55.301 1 59.38 ? C6 BOG 607 A 1 HETATM 12 O O6 BOG . . . H 5 28.082 -5.97 55.09 1 58.56 ? O6 BOG 607 A 1 HETATM 13 C C1' BOG . . . H 5 32.297 -2.015 56.346 1 63.74 ? C1' BOG 607 A 1 HETATM 14 C C2' BOG . . . H 5 32.125 -0.754 55.536 1 63.06 ? C2' BOG 607 A 1 HETATM 15 C C3' BOG . . . H 5 32.982 -0.746 54.277 1 63.65 ? C3' BOG 607 A 1 HETATM 16 C C4' BOG . . . H 5 33.481 0.625 53.83 1 66.85 ? C4' BOG 607 A 1 HETATM 17 C C5' BOG . . . H 5 34.914 0.927 54.291 1 69.29 ? C5' BOG 607 A 1 HETATM 18 C C6' BOG . . . H 5 35.524 2.29 53.911 1 67.53 ? C6' BOG 607 A 1 HETATM 19 C C7' BOG . . . H 5 36.352 2.325 52.627 1 65.95 ? C7' BOG 607 A 1 HETATM 20 C C8' BOG . . . H 5 35.543 2.433 51.345 1 64.86 ? C8' BOG 607 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 20 #