data_4NLV # _model_server_result.job_id RMF4YwbbO6l402pmy1Wd3A _model_server_result.datetime_utc '2024-12-13 08:52:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4nlv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":911}' # _entry.id 4NLV # _exptl.entry_id 4NLV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4NLV _cell.length_a 128.53 _cell.length_b 128.53 _cell.length_c 111.623 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4NLV _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id L _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MET 95 A MET 95 1_555 A N CAS 96 A CAS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C CAS 96 A CAS 96 1_555 A N LEU 97 A LEU 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale3 A C GLY 211 A GLY 211 1_555 A N CAS 212 A CAS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale4 A C CAS 212 A CAS 212 1_555 A N ASP 213 A ASP 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale5 A C TYR 280 A TYR 280 1_555 A N CAS 281 A CAS 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale6 A C CAS 281 A CAS 281 1_555 A N VAL 282 A VAL 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? metalc ? metalc1 A O LEU 268 A LEU 268 1_555 L NA NA . A NA 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? metalc ? metalc2 A O ASN 269 A ASN 269 1_555 L NA NA . A NA 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.91 ? metalc ? metalc3 A OG SER 271 A SER 271 1_555 L NA NA . A NA 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.656 ? metalc ? metalc4 A O GLY 284 A GLY 284 1_555 L NA NA . A NA 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? metalc ? metalc5 A O GLY 285 A GLY 285 1_555 L NA NA . A NA 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc6 L NA NA . A NA 911 1_555 M O HOH . A HOH 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.687 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4NLV _atom_sites.fract_transf_matrix[1][1] 0.00778 _atom_sites.fract_transf_matrix[1][2] 0.004492 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008984 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008959 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACY A 1 901 901 ACY ACY . C 2 ACY A 1 902 902 ACY ACY . D 2 ACY A 1 903 903 ACY ACY . E 2 ACY A 1 904 904 ACY ACY . F 2 ACY A 1 905 905 ACY ACY . G 2 ACY A 1 906 906 ACY ACY . H 2 ACY A 1 907 907 ACY ACY . I 2 ACY A 1 908 908 ACY ACY . J 3 1PE A 1 909 1001 1PE 1PE . K 3 1PE A 1 910 1002 1PE 1PE . L 4 NA A 1 911 2001 NA NA . M 5 HOH A 1 1001 501 HOH HOH . M 5 HOH A 2 1002 502 HOH HOH . M 5 HOH A 3 1003 503 HOH HOH . M 5 HOH A 4 1004 504 HOH HOH . M 5 HOH A 5 1005 505 HOH HOH . M 5 HOH A 6 1006 506 HOH HOH . M 5 HOH A 7 1007 507 HOH HOH . M 5 HOH A 8 1008 508 HOH HOH . M 5 HOH A 9 1009 509 HOH HOH . M 5 HOH A 10 1010 510 HOH HOH . M 5 HOH A 11 1011 511 HOH HOH . M 5 HOH A 12 1012 512 HOH HOH . M 5 HOH A 13 1013 513 HOH HOH . M 5 HOH A 14 1014 514 HOH HOH . M 5 HOH A 15 1015 515 HOH HOH . M 5 HOH A 16 1016 516 HOH HOH . M 5 HOH A 17 1017 517 HOH HOH . M 5 HOH A 18 1018 518 HOH HOH . M 5 HOH A 19 1019 519 HOH HOH . M 5 HOH A 20 1020 520 HOH HOH . M 5 HOH A 21 1021 521 HOH HOH . M 5 HOH A 22 1022 522 HOH HOH . M 5 HOH A 23 1023 523 HOH HOH . M 5 HOH A 24 1024 524 HOH HOH . M 5 HOH A 25 1025 525 HOH HOH . M 5 HOH A 26 1026 526 HOH HOH . M 5 HOH A 27 1027 527 HOH HOH . M 5 HOH A 28 1028 528 HOH HOH . M 5 HOH A 29 1029 529 HOH HOH . M 5 HOH A 30 1030 530 HOH HOH . M 5 HOH A 31 1031 531 HOH HOH . M 5 HOH A 32 1032 532 HOH HOH . M 5 HOH A 33 1033 533 HOH HOH . M 5 HOH A 34 1034 534 HOH HOH . M 5 HOH A 35 1035 535 HOH HOH . M 5 HOH A 36 1036 536 HOH HOH . M 5 HOH A 37 1037 537 HOH HOH . M 5 HOH A 38 1038 538 HOH HOH . M 5 HOH A 39 1039 539 HOH HOH . M 5 HOH A 40 1040 540 HOH HOH . M 5 HOH A 41 1041 541 HOH HOH . M 5 HOH A 42 1042 542 HOH HOH . M 5 HOH A 43 1043 543 HOH HOH . M 5 HOH A 44 1044 544 HOH HOH . M 5 HOH A 45 1045 545 HOH HOH . M 5 HOH A 46 1046 546 HOH HOH . M 5 HOH A 47 1047 547 HOH HOH . M 5 HOH A 48 1048 548 HOH HOH . M 5 HOH A 49 1049 549 HOH HOH . M 5 HOH A 50 1050 550 HOH HOH . M 5 HOH A 51 1051 551 HOH HOH . M 5 HOH A 52 1052 552 HOH HOH . M 5 HOH A 53 1053 553 HOH HOH . M 5 HOH A 54 1054 554 HOH HOH . M 5 HOH A 55 1055 555 HOH HOH . M 5 HOH A 56 1056 556 HOH HOH . M 5 HOH A 57 1057 557 HOH HOH . M 5 HOH A 58 1058 558 HOH HOH . M 5 HOH A 59 1059 559 HOH HOH . M 5 HOH A 60 1060 560 HOH HOH . M 5 HOH A 61 1061 561 HOH HOH . M 5 HOH A 62 1062 562 HOH HOH . M 5 HOH A 63 1063 563 HOH HOH . M 5 HOH A 64 1064 564 HOH HOH . M 5 HOH A 65 1065 565 HOH HOH . M 5 HOH A 66 1066 566 HOH HOH . M 5 HOH A 67 1067 567 HOH HOH . M 5 HOH A 68 1068 568 HOH HOH . M 5 HOH A 69 1069 569 HOH HOH . M 5 HOH A 70 1070 570 HOH HOH . M 5 HOH A 71 1071 571 HOH HOH . M 5 HOH A 72 1072 572 HOH HOH . M 5 HOH A 73 1073 573 HOH HOH . M 5 HOH A 74 1074 574 HOH HOH . M 5 HOH A 75 1075 575 HOH HOH . M 5 HOH A 76 1076 576 HOH HOH . M 5 HOH A 77 1077 577 HOH HOH . M 5 HOH A 78 1078 578 HOH HOH . M 5 HOH A 79 1079 579 HOH HOH . M 5 HOH A 80 1080 580 HOH HOH . M 5 HOH A 81 1081 581 HOH HOH . M 5 HOH A 82 1082 582 HOH HOH . M 5 HOH A 83 1083 583 HOH HOH . M 5 HOH A 84 1084 584 HOH HOH . M 5 HOH A 85 1085 585 HOH HOH . M 5 HOH A 86 1086 586 HOH HOH . M 5 HOH A 87 1087 587 HOH HOH . M 5 HOH A 88 1088 588 HOH HOH . M 5 HOH A 89 1089 590 HOH HOH . M 5 HOH A 90 1090 591 HOH HOH . M 5 HOH A 91 1091 592 HOH HOH . M 5 HOH A 92 1092 593 HOH HOH . M 5 HOH A 93 1093 594 HOH HOH . M 5 HOH A 94 1094 595 HOH HOH . M 5 HOH A 95 1095 596 HOH HOH . M 5 HOH A 96 1096 597 HOH HOH . M 5 HOH A 97 1097 599 HOH HOH . M 5 HOH A 98 1098 600 HOH HOH . M 5 HOH A 99 1099 601 HOH HOH . M 5 HOH A 100 1100 602 HOH HOH . M 5 HOH A 101 1101 603 HOH HOH . M 5 HOH A 102 1102 604 HOH HOH . M 5 HOH A 103 1103 605 HOH HOH . M 5 HOH A 104 1104 606 HOH HOH . M 5 HOH A 105 1105 607 HOH HOH . M 5 HOH A 106 1106 608 HOH HOH . M 5 HOH A 107 1107 609 HOH HOH . M 5 HOH A 108 1108 610 HOH HOH . M 5 HOH A 109 1109 611 HOH HOH . M 5 HOH A 110 1110 612 HOH HOH . M 5 HOH A 111 1111 613 HOH HOH . M 5 HOH A 112 1112 614 HOH HOH . M 5 HOH A 113 1113 615 HOH HOH . M 5 HOH A 114 1114 616 HOH HOH . M 5 HOH A 115 1115 617 HOH HOH . M 5 HOH A 116 1116 618 HOH HOH . M 5 HOH A 117 1117 619 HOH HOH . M 5 HOH A 118 1118 620 HOH HOH . M 5 HOH A 119 1119 621 HOH HOH . M 5 HOH A 120 1120 622 HOH HOH . M 5 HOH A 121 1121 623 HOH HOH . M 5 HOH A 122 1122 624 HOH HOH . M 5 HOH A 123 1123 625 HOH HOH . M 5 HOH A 124 1124 626 HOH HOH . M 5 HOH A 125 1125 627 HOH HOH . M 5 HOH A 126 1126 628 HOH HOH . M 5 HOH A 127 1127 629 HOH HOH . M 5 HOH A 128 1128 630 HOH HOH . M 5 HOH A 129 1129 631 HOH HOH . M 5 HOH A 130 1130 632 HOH HOH . M 5 HOH A 131 1131 633 HOH HOH . M 5 HOH A 132 1132 634 HOH HOH . M 5 HOH A 133 1133 635 HOH HOH . M 5 HOH A 134 1134 636 HOH HOH . M 5 HOH A 135 1135 637 HOH HOH . M 5 HOH A 136 1136 638 HOH HOH . M 5 HOH A 137 1137 639 HOH HOH . M 5 HOH A 138 1138 640 HOH HOH . M 5 HOH A 139 1139 641 HOH HOH . M 5 HOH A 140 1140 642 HOH HOH . M 5 HOH A 141 1141 644 HOH HOH . M 5 HOH A 142 1142 645 HOH HOH . M 5 HOH A 143 1143 646 HOH HOH . M 5 HOH A 144 1144 647 HOH HOH . M 5 HOH A 145 1145 648 HOH HOH . M 5 HOH A 146 1146 649 HOH HOH . M 5 HOH A 147 1147 650 HOH HOH . M 5 HOH A 148 1148 651 HOH HOH . M 5 HOH A 149 1149 652 HOH HOH . M 5 HOH A 150 1150 654 HOH HOH . M 5 HOH A 151 1151 655 HOH HOH . M 5 HOH A 152 1152 656 HOH HOH . M 5 HOH A 153 1153 657 HOH HOH . M 5 HOH A 154 1154 658 HOH HOH . M 5 HOH A 155 1155 659 HOH HOH . M 5 HOH A 156 1156 660 HOH HOH . M 5 HOH A 157 1157 661 HOH HOH . M 5 HOH A 158 1158 662 HOH HOH . M 5 HOH A 159 1159 663 HOH HOH . M 5 HOH A 160 1160 664 HOH HOH . M 5 HOH A 161 1161 665 HOH HOH . M 5 HOH A 162 1162 666 HOH HOH . M 5 HOH A 163 1163 667 HOH HOH . M 5 HOH A 164 1164 668 HOH HOH . M 5 HOH A 165 1165 669 HOH HOH . M 5 HOH A 166 1166 670 HOH HOH . M 5 HOH A 167 1167 673 HOH HOH . M 5 HOH A 168 1168 674 HOH HOH . M 5 HOH A 169 1169 675 HOH HOH . M 5 HOH A 170 1170 676 HOH HOH . M 5 HOH A 171 1171 678 HOH HOH . M 5 HOH A 172 1172 679 HOH HOH . M 5 HOH A 173 1173 680 HOH HOH . M 5 HOH A 174 1174 681 HOH HOH . M 5 HOH A 175 1175 682 HOH HOH . M 5 HOH A 176 1176 683 HOH HOH . M 5 HOH A 177 1177 684 HOH HOH . M 5 HOH A 178 1178 685 HOH HOH . M 5 HOH A 179 1179 686 HOH HOH . M 5 HOH A 180 1180 687 HOH HOH . M 5 HOH A 181 1181 688 HOH HOH . M 5 HOH A 182 1182 689 HOH HOH . M 5 HOH A 183 1183 690 HOH HOH . M 5 HOH A 184 1184 691 HOH HOH . M 5 HOH A 185 1185 692 HOH HOH . M 5 HOH A 186 1186 693 HOH HOH . M 5 HOH A 187 1187 695 HOH HOH . M 5 HOH A 188 1188 696 HOH HOH . M 5 HOH A 189 1189 697 HOH HOH . M 5 HOH A 190 1190 698 HOH HOH . M 5 HOH A 191 1191 699 HOH HOH . M 5 HOH A 192 1192 700 HOH HOH . M 5 HOH A 193 1193 701 HOH HOH . M 5 HOH A 194 1194 702 HOH HOH . M 5 HOH A 195 1195 703 HOH HOH . M 5 HOH A 196 1196 704 HOH HOH . M 5 HOH A 197 1197 706 HOH HOH . M 5 HOH A 198 1198 707 HOH HOH . M 5 HOH A 199 1199 708 HOH HOH . M 5 HOH A 200 1200 709 HOH HOH . M 5 HOH A 201 1201 710 HOH HOH . M 5 HOH A 202 1202 711 HOH HOH . M 5 HOH A 203 1203 712 HOH HOH . M 5 HOH A 204 1204 713 HOH HOH . M 5 HOH A 205 1205 714 HOH HOH . M 5 HOH A 206 1206 716 HOH HOH . M 5 HOH A 207 1207 717 HOH HOH . M 5 HOH A 208 1208 718 HOH HOH . M 5 HOH A 209 1209 720 HOH HOH . M 5 HOH A 210 1210 721 HOH HOH . M 5 HOH A 211 1211 722 HOH HOH . M 5 HOH A 212 1212 723 HOH HOH . M 5 HOH A 213 1213 724 HOH HOH . M 5 HOH A 214 1214 725 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id L _atom_site.label_entity_id 4 _atom_site.Cartn_x 224.492 _atom_site.Cartn_y -57.587 _atom_site.Cartn_z -13.729 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 32.52 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 911 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 345 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #