data_4NLX # _model_server_result.job_id wDhLh2ZFaB73yVgRnot9CA _model_server_result.datetime_utc '2024-12-25 18:14:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4nlx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":908}' # _entry.id 4NLX # _exptl.entry_id 4NLX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4NLX _cell.length_a 129.177 _cell.length_b 129.177 _cell.length_c 111.613 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4NLX _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MET 95 A MET 95 1_555 A N CAS 96 A CAS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C CAS 96 A CAS 96 1_555 A N LEU 97 A LEU 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 A C GLY 211 A GLY 211 1_555 A N CAS 212 A CAS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale4 A C CAS 212 A CAS 212 1_555 A N ASP 213 A ASP 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale5 A C TYR 280 A TYR 280 1_555 A N CAS 281 A CAS 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale6 A C CAS 281 A CAS 281 1_555 A N VAL 282 A VAL 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? metalc ? metalc1 A O LEU 268 A LEU 268 1_555 I NA NA . A NA 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.737 ? metalc ? metalc2 A O ASN 269 A ASN 269 1_555 I NA NA . A NA 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.77 ? metalc ? metalc3 A OG SER 271 A SER 271 1_555 I NA NA . A NA 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.743 ? metalc ? metalc4 A O GLY 284 A GLY 284 1_555 I NA NA . A NA 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? metalc ? metalc5 A O GLY 285 A GLY 285 1_555 I NA NA . A NA 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.696 ? metalc ? metalc6 I NA NA . A NA 908 1_555 J O HOH . A HOH 1078 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.691 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4NLX _atom_sites.fract_transf_matrix[1][1] 0.007741 _atom_sites.fract_transf_matrix[1][2] 0.004469 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008939 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00896 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACY A 1 901 901 ACY ACY . C 2 ACY A 1 902 902 ACY ACY . D 2 ACY A 1 903 904 ACY ACY . E 2 ACY A 1 904 905 ACY ACY . F 2 ACY A 1 905 906 ACY ACY . G 3 1PE A 1 906 1001 1PE 1PE . H 3 1PE A 1 907 1002 1PE 1PE . I 4 NA A 1 908 2001 NA NA . J 5 HOH A 1 1001 504 HOH HOH . J 5 HOH A 2 1002 505 HOH HOH . J 5 HOH A 3 1003 507 HOH HOH . J 5 HOH A 4 1004 509 HOH HOH . J 5 HOH A 5 1005 510 HOH HOH . J 5 HOH A 6 1006 511 HOH HOH . J 5 HOH A 7 1007 512 HOH HOH . J 5 HOH A 8 1008 520 HOH HOH . J 5 HOH A 9 1009 521 HOH HOH . J 5 HOH A 10 1010 523 HOH HOH . J 5 HOH A 11 1011 524 HOH HOH . J 5 HOH A 12 1012 525 HOH HOH . J 5 HOH A 13 1013 526 HOH HOH . J 5 HOH A 14 1014 529 HOH HOH . J 5 HOH A 15 1015 530 HOH HOH . J 5 HOH A 16 1016 532 HOH HOH . J 5 HOH A 17 1017 534 HOH HOH . J 5 HOH A 18 1018 535 HOH HOH . J 5 HOH A 19 1019 536 HOH HOH . J 5 HOH A 20 1020 538 HOH HOH . J 5 HOH A 21 1021 539 HOH HOH . J 5 HOH A 22 1022 540 HOH HOH . J 5 HOH A 23 1023 543 HOH HOH . J 5 HOH A 24 1024 544 HOH HOH . J 5 HOH A 25 1025 545 HOH HOH . J 5 HOH A 26 1026 546 HOH HOH . J 5 HOH A 27 1027 549 HOH HOH . J 5 HOH A 28 1028 551 HOH HOH . J 5 HOH A 29 1029 553 HOH HOH . J 5 HOH A 30 1030 554 HOH HOH . J 5 HOH A 31 1031 555 HOH HOH . J 5 HOH A 32 1032 556 HOH HOH . J 5 HOH A 33 1033 558 HOH HOH . J 5 HOH A 34 1034 559 HOH HOH . J 5 HOH A 35 1035 561 HOH HOH . J 5 HOH A 36 1036 562 HOH HOH . J 5 HOH A 37 1037 564 HOH HOH . J 5 HOH A 38 1038 565 HOH HOH . J 5 HOH A 39 1039 566 HOH HOH . J 5 HOH A 40 1040 568 HOH HOH . J 5 HOH A 41 1041 570 HOH HOH . J 5 HOH A 42 1042 571 HOH HOH . J 5 HOH A 43 1043 572 HOH HOH . J 5 HOH A 44 1044 576 HOH HOH . J 5 HOH A 45 1045 577 HOH HOH . J 5 HOH A 46 1046 579 HOH HOH . J 5 HOH A 47 1047 580 HOH HOH . J 5 HOH A 48 1048 581 HOH HOH . J 5 HOH A 49 1049 582 HOH HOH . J 5 HOH A 50 1050 584 HOH HOH . J 5 HOH A 51 1051 585 HOH HOH . J 5 HOH A 52 1052 587 HOH HOH . J 5 HOH A 53 1053 589 HOH HOH . J 5 HOH A 54 1054 591 HOH HOH . J 5 HOH A 55 1055 593 HOH HOH . J 5 HOH A 56 1056 595 HOH HOH . J 5 HOH A 57 1057 600 HOH HOH . J 5 HOH A 58 1058 606 HOH HOH . J 5 HOH A 59 1059 607 HOH HOH . J 5 HOH A 60 1060 608 HOH HOH . J 5 HOH A 61 1061 609 HOH HOH . J 5 HOH A 62 1062 611 HOH HOH . J 5 HOH A 63 1063 612 HOH HOH . J 5 HOH A 64 1064 613 HOH HOH . J 5 HOH A 65 1065 614 HOH HOH . J 5 HOH A 66 1066 616 HOH HOH . J 5 HOH A 67 1067 617 HOH HOH . J 5 HOH A 68 1068 622 HOH HOH . J 5 HOH A 69 1069 624 HOH HOH . J 5 HOH A 70 1070 625 HOH HOH . J 5 HOH A 71 1071 626 HOH HOH . J 5 HOH A 72 1072 630 HOH HOH . J 5 HOH A 73 1073 631 HOH HOH . J 5 HOH A 74 1074 633 HOH HOH . J 5 HOH A 75 1075 634 HOH HOH . J 5 HOH A 76 1076 636 HOH HOH . J 5 HOH A 77 1077 637 HOH HOH . J 5 HOH A 78 1078 640 HOH HOH . J 5 HOH A 79 1079 646 HOH HOH . J 5 HOH A 80 1080 647 HOH HOH . J 5 HOH A 81 1081 649 HOH HOH . J 5 HOH A 82 1082 653 HOH HOH . J 5 HOH A 83 1083 654 HOH HOH . J 5 HOH A 84 1084 655 HOH HOH . J 5 HOH A 85 1085 656 HOH HOH . J 5 HOH A 86 1086 657 HOH HOH . J 5 HOH A 87 1087 667 HOH HOH . J 5 HOH A 88 1088 668 HOH HOH . J 5 HOH A 89 1089 670 HOH HOH . J 5 HOH A 90 1090 673 HOH HOH . J 5 HOH A 91 1091 678 HOH HOH . J 5 HOH A 92 1092 694 HOH HOH . J 5 HOH A 93 1093 695 HOH HOH . J 5 HOH A 94 1094 696 HOH HOH . J 5 HOH A 95 1095 706 HOH HOH . J 5 HOH A 96 1096 707 HOH HOH . J 5 HOH A 97 1097 708 HOH HOH . J 5 HOH A 98 1098 709 HOH HOH . J 5 HOH A 99 1099 712 HOH HOH . J 5 HOH A 100 1100 716 HOH HOH . J 5 HOH A 101 1101 719 HOH HOH . J 5 HOH A 102 1102 724 HOH HOH . J 5 HOH A 103 1103 727 HOH HOH . J 5 HOH A 104 1104 728 HOH HOH . J 5 HOH A 105 1105 729 HOH HOH . J 5 HOH A 106 1106 731 HOH HOH . J 5 HOH A 107 1107 732 HOH HOH . J 5 HOH A 108 1108 734 HOH HOH . J 5 HOH A 109 1109 741 HOH HOH . J 5 HOH A 110 1110 742 HOH HOH . J 5 HOH A 111 1111 743 HOH HOH . J 5 HOH A 112 1112 748 HOH HOH . J 5 HOH A 113 1113 749 HOH HOH . J 5 HOH A 114 1114 750 HOH HOH . J 5 HOH A 115 1115 753 HOH HOH . J 5 HOH A 116 1116 757 HOH HOH . J 5 HOH A 117 1117 761 HOH HOH . J 5 HOH A 118 1118 763 HOH HOH . J 5 HOH A 119 1119 769 HOH HOH . J 5 HOH A 120 1120 773 HOH HOH . J 5 HOH A 121 1121 774 HOH HOH . J 5 HOH A 122 1122 777 HOH HOH . J 5 HOH A 123 1123 779 HOH HOH . J 5 HOH A 124 1124 781 HOH HOH . J 5 HOH A 125 1125 784 HOH HOH . J 5 HOH A 126 1126 785 HOH HOH . J 5 HOH A 127 1127 788 HOH HOH . J 5 HOH A 128 1128 791 HOH HOH . J 5 HOH A 129 1129 793 HOH HOH . J 5 HOH A 130 1130 796 HOH HOH . J 5 HOH A 131 1131 798 HOH HOH . J 5 HOH A 132 1132 799 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 4 _atom_site.Cartn_x 225.583 _atom_site.Cartn_y -58.069 _atom_site.Cartn_z -14.088 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 32.87 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 908 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #