data_4NLY # _model_server_result.job_id DeDbwFPV4pehg-BkUA46JA _model_server_result.datetime_utc '2024-12-25 17:10:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4nly # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":903}' # _entry.id 4NLY # _exptl.entry_id 4NLY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 60.052 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETIC ACID' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4NLY _cell.length_a 128.802 _cell.length_b 128.802 _cell.length_c 111.679 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4NLY _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MET 95 A MET 95 1_555 A N CAS 96 A CAS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C CAS 96 A CAS 96 1_555 A N LEU 97 A LEU 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 A C GLY 211 A GLY 211 1_555 A N CAS 212 A CAS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale4 A C CAS 212 A CAS 212 1_555 A N ASP 213 A ASP 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 A C TYR 280 A TYR 280 1_555 A N CAS 281 A CAS 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale6 A C CAS 281 A CAS 281 1_555 A N VAL 282 A VAL 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? metalc ? metalc1 A O LEU 268 A LEU 268 1_555 I NA NA . A NA 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.632 ? metalc ? metalc2 A O ASN 269 A ASN 269 1_555 I NA NA . A NA 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.686 ? metalc ? metalc3 A OG SER 271 A SER 271 1_555 I NA NA . A NA 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.764 ? metalc ? metalc4 A O GLY 284 A GLY 284 1_555 I NA NA . A NA 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.652 ? metalc ? metalc5 A O GLY 285 A GLY 285 1_555 I NA NA . A NA 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.573 ? metalc ? metalc6 I NA NA . A NA 908 1_555 J O HOH . A HOH 1099 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.734 ? # _chem_comp.formula 'C2 H4 O2' _chem_comp.formula_weight 60.052 _chem_comp.id ACY _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACY doub 38 n n C OXT ACY sing 39 n n C CH3 ACY sing 40 n n OXT HXT ACY sing 41 n n CH3 H1 ACY sing 42 n n CH3 H2 ACY sing 43 n n CH3 H3 ACY sing 44 n n # _atom_sites.entry_id 4NLY _atom_sites.fract_transf_matrix[1][1] 0.007764 _atom_sites.fract_transf_matrix[1][2] 0.004482 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008965 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008954 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACY A 1 901 901 ACY ACY . C 2 ACY A 1 902 902 ACY ACY . D 2 ACY A 1 903 903 ACY ACY . E 2 ACY A 1 904 904 ACY ACY . F 2 ACY A 1 905 905 ACY ACY . G 3 1PE A 1 906 1001 1PE 1PE . H 3 1PE A 1 907 1002 1PE 1PE . I 4 NA A 1 908 2001 NA NA . J 5 HOH A 1 1001 501 HOH HOH . J 5 HOH A 2 1002 502 HOH HOH . J 5 HOH A 3 1003 503 HOH HOH . J 5 HOH A 4 1004 504 HOH HOH . J 5 HOH A 5 1005 505 HOH HOH . J 5 HOH A 6 1006 506 HOH HOH . J 5 HOH A 7 1007 507 HOH HOH . J 5 HOH A 8 1008 508 HOH HOH . J 5 HOH A 9 1009 509 HOH HOH . J 5 HOH A 10 1010 510 HOH HOH . J 5 HOH A 11 1011 511 HOH HOH . J 5 HOH A 12 1012 512 HOH HOH . J 5 HOH A 13 1013 514 HOH HOH . J 5 HOH A 14 1014 515 HOH HOH . J 5 HOH A 15 1015 516 HOH HOH . J 5 HOH A 16 1016 517 HOH HOH . J 5 HOH A 17 1017 518 HOH HOH . J 5 HOH A 18 1018 519 HOH HOH . J 5 HOH A 19 1019 520 HOH HOH . J 5 HOH A 20 1020 521 HOH HOH . J 5 HOH A 21 1021 522 HOH HOH . J 5 HOH A 22 1022 523 HOH HOH . J 5 HOH A 23 1023 524 HOH HOH . J 5 HOH A 24 1024 525 HOH HOH . J 5 HOH A 25 1025 526 HOH HOH . J 5 HOH A 26 1026 527 HOH HOH . J 5 HOH A 27 1027 529 HOH HOH . J 5 HOH A 28 1028 530 HOH HOH . J 5 HOH A 29 1029 531 HOH HOH . J 5 HOH A 30 1030 532 HOH HOH . J 5 HOH A 31 1031 533 HOH HOH . J 5 HOH A 32 1032 534 HOH HOH . J 5 HOH A 33 1033 536 HOH HOH . J 5 HOH A 34 1034 537 HOH HOH . J 5 HOH A 35 1035 538 HOH HOH . J 5 HOH A 36 1036 539 HOH HOH . J 5 HOH A 37 1037 540 HOH HOH . J 5 HOH A 38 1038 541 HOH HOH . J 5 HOH A 39 1039 542 HOH HOH . J 5 HOH A 40 1040 543 HOH HOH . J 5 HOH A 41 1041 544 HOH HOH . J 5 HOH A 42 1042 546 HOH HOH . J 5 HOH A 43 1043 547 HOH HOH . J 5 HOH A 44 1044 548 HOH HOH . J 5 HOH A 45 1045 549 HOH HOH . J 5 HOH A 46 1046 550 HOH HOH . J 5 HOH A 47 1047 551 HOH HOH . J 5 HOH A 48 1048 552 HOH HOH . J 5 HOH A 49 1049 553 HOH HOH . J 5 HOH A 50 1050 554 HOH HOH . J 5 HOH A 51 1051 555 HOH HOH . J 5 HOH A 52 1052 558 HOH HOH . J 5 HOH A 53 1053 559 HOH HOH . J 5 HOH A 54 1054 560 HOH HOH . J 5 HOH A 55 1055 561 HOH HOH . J 5 HOH A 56 1056 562 HOH HOH . J 5 HOH A 57 1057 563 HOH HOH . J 5 HOH A 58 1058 564 HOH HOH . J 5 HOH A 59 1059 565 HOH HOH . J 5 HOH A 60 1060 566 HOH HOH . J 5 HOH A 61 1061 567 HOH HOH . J 5 HOH A 62 1062 568 HOH HOH . J 5 HOH A 63 1063 569 HOH HOH . J 5 HOH A 64 1064 570 HOH HOH . J 5 HOH A 65 1065 571 HOH HOH . J 5 HOH A 66 1066 572 HOH HOH . J 5 HOH A 67 1067 573 HOH HOH . J 5 HOH A 68 1068 574 HOH HOH . J 5 HOH A 69 1069 575 HOH HOH . J 5 HOH A 70 1070 576 HOH HOH . J 5 HOH A 71 1071 578 HOH HOH . J 5 HOH A 72 1072 579 HOH HOH . J 5 HOH A 73 1073 580 HOH HOH . J 5 HOH A 74 1074 581 HOH HOH . J 5 HOH A 75 1075 582 HOH HOH . J 5 HOH A 76 1076 583 HOH HOH . J 5 HOH A 77 1077 584 HOH HOH . J 5 HOH A 78 1078 585 HOH HOH . J 5 HOH A 79 1079 586 HOH HOH . J 5 HOH A 80 1080 587 HOH HOH . J 5 HOH A 81 1081 589 HOH HOH . J 5 HOH A 82 1082 590 HOH HOH . J 5 HOH A 83 1083 591 HOH HOH . J 5 HOH A 84 1084 592 HOH HOH . J 5 HOH A 85 1085 593 HOH HOH . J 5 HOH A 86 1086 594 HOH HOH . J 5 HOH A 87 1087 596 HOH HOH . J 5 HOH A 88 1088 597 HOH HOH . J 5 HOH A 89 1089 598 HOH HOH . J 5 HOH A 90 1090 599 HOH HOH . J 5 HOH A 91 1091 600 HOH HOH . J 5 HOH A 92 1092 601 HOH HOH . J 5 HOH A 93 1093 602 HOH HOH . J 5 HOH A 94 1094 603 HOH HOH . J 5 HOH A 95 1095 604 HOH HOH . J 5 HOH A 96 1096 605 HOH HOH . J 5 HOH A 97 1097 606 HOH HOH . J 5 HOH A 98 1098 607 HOH HOH . J 5 HOH A 99 1099 608 HOH HOH . J 5 HOH A 100 1100 610 HOH HOH . J 5 HOH A 101 1101 611 HOH HOH . J 5 HOH A 102 1102 612 HOH HOH . J 5 HOH A 103 1103 613 HOH HOH . J 5 HOH A 104 1104 614 HOH HOH . J 5 HOH A 105 1105 615 HOH HOH . J 5 HOH A 106 1106 616 HOH HOH . J 5 HOH A 107 1107 617 HOH HOH . J 5 HOH A 108 1108 618 HOH HOH . J 5 HOH A 109 1109 619 HOH HOH . J 5 HOH A 110 1110 620 HOH HOH . J 5 HOH A 111 1111 621 HOH HOH . J 5 HOH A 112 1112 623 HOH HOH . J 5 HOH A 113 1113 624 HOH HOH . J 5 HOH A 114 1114 625 HOH HOH . J 5 HOH A 115 1115 627 HOH HOH . J 5 HOH A 116 1116 628 HOH HOH . J 5 HOH A 117 1117 629 HOH HOH . J 5 HOH A 118 1118 630 HOH HOH . J 5 HOH A 119 1119 631 HOH HOH . J 5 HOH A 120 1120 632 HOH HOH . J 5 HOH A 121 1121 633 HOH HOH . J 5 HOH A 122 1122 634 HOH HOH . J 5 HOH A 123 1123 635 HOH HOH . J 5 HOH A 124 1124 637 HOH HOH . J 5 HOH A 125 1125 638 HOH HOH . J 5 HOH A 126 1126 639 HOH HOH . J 5 HOH A 127 1127 641 HOH HOH . J 5 HOH A 128 1128 642 HOH HOH . J 5 HOH A 129 1129 643 HOH HOH . J 5 HOH A 130 1130 644 HOH HOH . J 5 HOH A 131 1131 645 HOH HOH . J 5 HOH A 132 1132 647 HOH HOH . J 5 HOH A 133 1133 648 HOH HOH . J 5 HOH A 134 1134 649 HOH HOH . J 5 HOH A 135 1135 650 HOH HOH . J 5 HOH A 136 1136 652 HOH HOH . J 5 HOH A 137 1137 653 HOH HOH . J 5 HOH A 138 1138 654 HOH HOH . J 5 HOH A 139 1139 656 HOH HOH . J 5 HOH A 140 1140 657 HOH HOH . J 5 HOH A 141 1141 658 HOH HOH . J 5 HOH A 142 1142 659 HOH HOH . J 5 HOH A 143 1143 660 HOH HOH . J 5 HOH A 144 1144 661 HOH HOH . J 5 HOH A 145 1145 662 HOH HOH . J 5 HOH A 146 1146 663 HOH HOH . J 5 HOH A 147 1147 664 HOH HOH . J 5 HOH A 148 1148 665 HOH HOH . J 5 HOH A 149 1149 666 HOH HOH . J 5 HOH A 150 1150 667 HOH HOH . J 5 HOH A 151 1151 669 HOH HOH . J 5 HOH A 152 1152 670 HOH HOH . J 5 HOH A 153 1153 672 HOH HOH . J 5 HOH A 154 1154 674 HOH HOH . J 5 HOH A 155 1155 676 HOH HOH . J 5 HOH A 156 1156 677 HOH HOH . J 5 HOH A 157 1157 678 HOH HOH . J 5 HOH A 158 1158 680 HOH HOH . J 5 HOH A 159 1159 681 HOH HOH . J 5 HOH A 160 1160 682 HOH HOH . J 5 HOH A 161 1161 685 HOH HOH . J 5 HOH A 162 1162 686 HOH HOH . J 5 HOH A 163 1163 688 HOH HOH . J 5 HOH A 164 1164 689 HOH HOH . J 5 HOH A 165 1165 690 HOH HOH . J 5 HOH A 166 1166 691 HOH HOH . J 5 HOH A 167 1167 692 HOH HOH . J 5 HOH A 168 1168 693 HOH HOH . J 5 HOH A 169 1169 694 HOH HOH . J 5 HOH A 170 1170 695 HOH HOH . J 5 HOH A 171 1171 696 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACY . . . D 2 247.203 -83.197 24.99 1 26.5 ? C ACY 903 A 1 HETATM 2 O O ACY . . . D 2 246.842 -84.432 24.81 1 23.98 ? O ACY 903 A 1 HETATM 3 O OXT ACY . . . D 2 246.449 -82.199 25.255 1 28.5 ? OXT ACY 903 A 1 HETATM 4 C CH3 ACY . . . D 2 248.702 -82.977 24.856 1 26.81 ? CH3 ACY 903 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 600 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 4 #