data_4NM0
#
_model_server_result.job_id            XXgrikIjJmbmaz5gkmW_nQ 
_model_server_result.datetime_utc      '2024-11-29 03:22:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4nm0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":401}' 
#
_entry.id    4NM0 
#
_exptl.entry_id    4NM0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4NM0 
_cell.length_a            81.303 
_cell.length_b            81.303 
_cell.length_c            280.829 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4NM0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASN 186 A ASN 186 1_555 I MG MG . A MG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? 
metalc ? metalc2 A OD2 ASP 200 A ASP 200 1_555 I MG MG . A MG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? 
metalc ? metalc3 H MG MG . A MG 406 1_555 J O1B ADP . A ADP 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
metalc ? metalc4 I MG MG . A MG 407 1_555 J O3B ADP . A ADP 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? 
metalc ? metalc5 I MG MG . A MG 407 1_555 J O1A ADP . A ADP 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.8 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 190 n n 
C1 C2 GOL sing 191 n n 
C1 H11 GOL sing 192 n n 
C1 H12 GOL sing 193 n n 
O1 HO1 GOL sing 194 n n 
C2 O2 GOL sing 195 n n 
C2 C3 GOL sing 196 n n 
C2 H2 GOL sing 197 n n 
O2 HO2 GOL sing 198 n n 
C3 O3 GOL sing 199 n n 
C3 H31 GOL sing 200 n n 
C3 H32 GOL sing 201 n n 
O3 HO3 GOL sing 202 n n 
#
_atom_sites.entry_id                     4NM0 
_atom_sites.fract_transf_matrix[1][1]    0.0123 
_atom_sites.fract_transf_matrix[1][2]    0.007101 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014202 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003561 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 GOL A 1 401 1 GOL GOL . 
D 3 GOL A 1 402 2 GOL GOL . 
E 3 GOL A 1 403 3 GOL GOL . 
F 3 GOL A 1 404 5 GOL GOL . 
G 3 GOL A 1 405 9 GOL GOL . 
H 4 MG A 1 406 1 MG MG . 
I 4 MG A 1 407 2 MG MG . 
J 5 ADP A 1 408 1 ADP ADP . 
K 6 DTT A 1 409 1 DTT DTT . 
L 7 CL A 1 410 1 CL CL . 
M 8 HOH A 1 501 1 HOH HOH . 
M 8 HOH A 2 502 2 HOH HOH . 
M 8 HOH A 3 503 3 HOH HOH . 
M 8 HOH A 4 504 5 HOH HOH . 
M 8 HOH A 5 505 6 HOH HOH . 
M 8 HOH A 6 506 7 HOH HOH . 
M 8 HOH A 7 507 8 HOH HOH . 
M 8 HOH A 8 508 9 HOH HOH . 
M 8 HOH A 9 509 10 HOH HOH . 
M 8 HOH A 10 510 11 HOH HOH . 
M 8 HOH A 11 511 12 HOH HOH . 
M 8 HOH A 12 512 13 HOH HOH . 
M 8 HOH A 13 513 14 HOH HOH . 
M 8 HOH A 14 514 15 HOH HOH . 
M 8 HOH A 15 515 16 HOH HOH . 
M 8 HOH A 16 516 17 HOH HOH . 
M 8 HOH A 17 517 18 HOH HOH . 
M 8 HOH A 18 518 19 HOH HOH . 
M 8 HOH A 19 519 20 HOH HOH . 
M 8 HOH A 20 520 22 HOH HOH . 
M 8 HOH A 21 521 23 HOH HOH . 
M 8 HOH A 22 522 24 HOH HOH . 
M 8 HOH A 23 523 25 HOH HOH . 
M 8 HOH A 24 524 26 HOH HOH . 
M 8 HOH A 25 525 27 HOH HOH . 
M 8 HOH A 26 526 28 HOH HOH . 
M 8 HOH A 27 527 29 HOH HOH . 
M 8 HOH A 28 528 30 HOH HOH . 
M 8 HOH A 29 529 31 HOH HOH . 
M 8 HOH A 30 530 33 HOH HOH . 
M 8 HOH A 31 531 34 HOH HOH . 
M 8 HOH A 32 532 35 HOH HOH . 
M 8 HOH A 33 533 36 HOH HOH . 
M 8 HOH A 34 534 37 HOH HOH . 
M 8 HOH A 35 535 38 HOH HOH . 
M 8 HOH A 36 536 39 HOH HOH . 
M 8 HOH A 37 537 41 HOH HOH . 
M 8 HOH A 38 538 42 HOH HOH . 
M 8 HOH A 39 539 43 HOH HOH . 
M 8 HOH A 40 540 44 HOH HOH . 
M 8 HOH A 41 541 45 HOH HOH . 
M 8 HOH A 42 542 46 HOH HOH . 
M 8 HOH A 43 543 47 HOH HOH . 
M 8 HOH A 44 544 49 HOH HOH . 
M 8 HOH A 45 545 50 HOH HOH . 
M 8 HOH A 46 546 52 HOH HOH . 
M 8 HOH A 47 547 53 HOH HOH . 
M 8 HOH A 48 548 54 HOH HOH . 
M 8 HOH A 49 549 57 HOH HOH . 
M 8 HOH A 50 550 58 HOH HOH . 
M 8 HOH A 51 551 59 HOH HOH . 
M 8 HOH A 52 552 60 HOH HOH . 
M 8 HOH A 53 553 61 HOH HOH . 
M 8 HOH A 54 554 62 HOH HOH . 
M 8 HOH A 55 555 63 HOH HOH . 
M 8 HOH A 56 556 64 HOH HOH . 
M 8 HOH A 57 557 65 HOH HOH . 
M 8 HOH A 58 558 67 HOH HOH . 
M 8 HOH A 59 559 68 HOH HOH . 
M 8 HOH A 60 560 69 HOH HOH . 
M 8 HOH A 61 561 70 HOH HOH . 
M 8 HOH A 62 562 71 HOH HOH . 
M 8 HOH A 63 563 72 HOH HOH . 
M 8 HOH A 64 564 73 HOH HOH . 
M 8 HOH A 65 565 75 HOH HOH . 
M 8 HOH A 66 566 76 HOH HOH . 
M 8 HOH A 67 567 78 HOH HOH . 
M 8 HOH A 68 568 79 HOH HOH . 
M 8 HOH A 69 569 80 HOH HOH . 
M 8 HOH A 70 570 81 HOH HOH . 
M 8 HOH A 71 571 84 HOH HOH . 
M 8 HOH A 72 572 86 HOH HOH . 
M 8 HOH A 73 573 87 HOH HOH . 
M 8 HOH A 74 574 89 HOH HOH . 
M 8 HOH A 75 575 91 HOH HOH . 
M 8 HOH A 76 576 92 HOH HOH . 
M 8 HOH A 77 577 93 HOH HOH . 
M 8 HOH A 78 578 94 HOH HOH . 
M 8 HOH A 79 579 95 HOH HOH . 
M 8 HOH A 80 580 96 HOH HOH . 
M 8 HOH A 81 581 97 HOH HOH . 
M 8 HOH A 82 582 98 HOH HOH . 
M 8 HOH A 83 583 99 HOH HOH . 
M 8 HOH A 84 584 101 HOH HOH . 
M 8 HOH A 85 585 102 HOH HOH . 
M 8 HOH A 86 586 103 HOH HOH . 
M 8 HOH A 87 587 108 HOH HOH . 
M 8 HOH A 88 588 109 HOH HOH . 
M 8 HOH A 89 589 110 HOH HOH . 
M 8 HOH A 90 590 114 HOH HOH . 
M 8 HOH A 91 591 115 HOH HOH . 
M 8 HOH A 92 592 116 HOH HOH . 
M 8 HOH A 93 593 118 HOH HOH . 
M 8 HOH A 94 594 119 HOH HOH . 
M 8 HOH A 95 595 120 HOH HOH . 
M 8 HOH A 96 596 121 HOH HOH . 
M 8 HOH A 97 597 123 HOH HOH . 
M 8 HOH A 98 598 125 HOH HOH . 
M 8 HOH A 99 599 126 HOH HOH . 
M 8 HOH A 100 600 127 HOH HOH . 
M 8 HOH A 101 601 128 HOH HOH . 
M 8 HOH A 102 602 129 HOH HOH . 
M 8 HOH A 103 603 131 HOH HOH . 
M 8 HOH A 104 604 133 HOH HOH . 
M 8 HOH A 105 605 135 HOH HOH . 
M 8 HOH A 106 606 137 HOH HOH . 
M 8 HOH A 107 607 138 HOH HOH . 
M 8 HOH A 108 608 139 HOH HOH . 
M 8 HOH A 109 609 140 HOH HOH . 
M 8 HOH A 110 610 141 HOH HOH . 
M 8 HOH A 111 611 142 HOH HOH . 
M 8 HOH A 112 612 144 HOH HOH . 
M 8 HOH A 113 613 145 HOH HOH . 
M 8 HOH A 114 614 146 HOH HOH . 
M 8 HOH A 115 615 148 HOH HOH . 
M 8 HOH A 116 616 149 HOH HOH . 
M 8 HOH A 117 617 152 HOH HOH . 
M 8 HOH A 118 618 153 HOH HOH . 
M 8 HOH A 119 619 154 HOH HOH . 
M 8 HOH A 120 620 156 HOH HOH . 
M 8 HOH A 121 621 157 HOH HOH . 
M 8 HOH A 122 622 158 HOH HOH . 
M 8 HOH A 123 623 159 HOH HOH . 
M 8 HOH A 124 624 160 HOH HOH . 
M 8 HOH A 125 625 161 HOH HOH . 
M 8 HOH A 126 626 162 HOH HOH . 
M 8 HOH A 127 627 163 HOH HOH . 
M 8 HOH A 128 628 164 HOH HOH . 
M 8 HOH A 129 629 165 HOH HOH . 
M 8 HOH A 130 630 166 HOH HOH . 
M 8 HOH A 131 631 167 HOH HOH . 
M 8 HOH A 132 632 168 HOH HOH . 
M 8 HOH A 133 633 171 HOH HOH . 
M 8 HOH A 134 634 172 HOH HOH . 
M 8 HOH A 135 635 173 HOH HOH . 
M 8 HOH A 136 636 174 HOH HOH . 
M 8 HOH A 137 637 175 HOH HOH . 
M 8 HOH A 138 638 176 HOH HOH . 
M 8 HOH A 139 639 177 HOH HOH . 
M 8 HOH A 140 640 178 HOH HOH . 
M 8 HOH A 141 641 180 HOH HOH . 
M 8 HOH A 142 642 183 HOH HOH . 
M 8 HOH A 143 643 184 HOH HOH . 
M 8 HOH A 144 644 186 HOH HOH . 
M 8 HOH A 145 645 189 HOH HOH . 
M 8 HOH A 146 646 192 HOH HOH . 
M 8 HOH A 147 647 193 HOH HOH . 
M 8 HOH A 148 648 194 HOH HOH . 
M 8 HOH A 149 649 195 HOH HOH . 
M 8 HOH A 150 650 196 HOH HOH . 
M 8 HOH A 151 651 197 HOH HOH . 
M 8 HOH A 152 652 198 HOH HOH . 
M 8 HOH A 153 653 199 HOH HOH . 
N 8 HOH B 1 501 4 HOH HOH . 
N 8 HOH B 2 502 21 HOH HOH . 
N 8 HOH B 3 503 32 HOH HOH . 
N 8 HOH B 4 504 48 HOH HOH . 
N 8 HOH B 5 505 90 HOH HOH . 
N 8 HOH B 6 506 106 HOH HOH . 
N 8 HOH B 7 507 111 HOH HOH . 
N 8 HOH B 8 508 122 HOH HOH . 
N 8 HOH B 9 509 130 HOH HOH . 
N 8 HOH B 10 510 181 HOH HOH . 
N 8 HOH B 11 511 191 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 3 -16.237 52.886 2.296 1 69.01 ? C1 GOL 401 A 1 
HETATM 2 O O1 GOL . . . C 3 -14.892 53.3 2.235 1 71.09 ? O1 GOL 401 A 1 
HETATM 3 C C2 GOL . . . C 3 -16.295 51.367 2.404 1 66.05 ? C2 GOL 401 A 1 
HETATM 4 O O2 GOL . . . C 3 -15.022 50.866 2.746 1 66.63 ? O2 GOL 401 A 1 
HETATM 5 C C3 GOL . . . C 3 -16.732 50.781 1.068 1 61.72 ? C3 GOL 401 A 1 
HETATM 6 O O3 GOL . . . C 3 -18 51.296 0.725 1 59.51 ? O3 GOL 401 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    37 
_model_server_stats.query_time_ms           503 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#