data_4NM3
#
_model_server_result.job_id            c5LixhE3QjgowUq0URwkig 
_model_server_result.datetime_utc      '2024-12-03 19:29:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4nm3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":402}' 
#
_entry.id    4NM3 
#
_exptl.entry_id    4NM3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4NM3 
_cell.length_a            81.032 
_cell.length_b            81.032 
_cell.length_c            281.085 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4NM3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C THR 8 A THR 8 1_555 A N SEP 9 A SEP 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale2 A C SEP 9 A SEP 9 1_555 A N PHE 10 A PHE 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
metalc ? metalc1 A OD1 ASN 186 A ASN 186 1_555 G MG MG . A MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? 
metalc ? metalc2 A OD2 ASP 200 A ASP 200 1_555 G MG MG . A MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? 
metalc ? metalc3 A OD1 ASP 200 A ASP 200 1_555 H MG MG . A MG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? 
metalc ? metalc4 A OD2 ASP 200 A ASP 200 1_555 H MG MG . A MG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.851 ? 
metalc ? metalc5 G MG MG . A MG 405 1_555 K O1A ADP . A ADP 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? 
metalc ? metalc6 G MG MG . A MG 405 1_555 K O1B ADP . A ADP 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? 
metalc ? metalc7 G MG MG . A MG 405 1_555 L O HOH . A HOH 584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? 
metalc ? metalc8 G MG MG . A MG 405 1_555 L O HOH . A HOH 671 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
metalc ? metalc9 H MG MG . A MG 406 1_555 K O3B ADP . A ADP 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? 
metalc ? metalc10 H MG MG . A MG 406 1_555 L O HOH . A HOH 532 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? 
metalc ? metalc11 H MG MG . A MG 406 1_555 L O HOH . A HOH 533 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.801 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 190 n n 
C1 C2 GOL sing 191 n n 
C1 H11 GOL sing 192 n n 
C1 H12 GOL sing 193 n n 
O1 HO1 GOL sing 194 n n 
C2 O2 GOL sing 195 n n 
C2 C3 GOL sing 196 n n 
C2 H2 GOL sing 197 n n 
O2 HO2 GOL sing 198 n n 
C3 O3 GOL sing 199 n n 
C3 H31 GOL sing 200 n n 
C3 H32 GOL sing 201 n n 
O3 HO3 GOL sing 202 n n 
#
_atom_sites.entry_id                     4NM3 
_atom_sites.fract_transf_matrix[1][1]    0.012341 
_atom_sites.fract_transf_matrix[1][2]    0.007125 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01425 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003558 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 GOL A 1 401 1 GOL GOL . 
D 3 GOL A 1 402 3 GOL GOL . 
E 3 GOL A 1 403 4 GOL GOL . 
F 3 GOL A 1 404 6 GOL GOL . 
G 4 MG A 1 405 1 MG MG . 
H 4 MG A 1 406 2 MG MG . 
I 5 CL A 1 407 1 CL CL . 
J 6 DTT A 1 408 1 DTT DTT . 
K 7 ADP A 1 409 1 ADP ADP . 
L 8 HOH A 1 501 1 HOH HOH . 
L 8 HOH A 2 502 2 HOH HOH . 
L 8 HOH A 3 503 3 HOH HOH . 
L 8 HOH A 4 504 4 HOH HOH . 
L 8 HOH A 5 505 5 HOH HOH . 
L 8 HOH A 6 506 6 HOH HOH . 
L 8 HOH A 7 507 7 HOH HOH . 
L 8 HOH A 8 508 8 HOH HOH . 
L 8 HOH A 9 509 10 HOH HOH . 
L 8 HOH A 10 510 11 HOH HOH . 
L 8 HOH A 11 511 12 HOH HOH . 
L 8 HOH A 12 512 13 HOH HOH . 
L 8 HOH A 13 513 15 HOH HOH . 
L 8 HOH A 14 514 16 HOH HOH . 
L 8 HOH A 15 515 17 HOH HOH . 
L 8 HOH A 16 516 18 HOH HOH . 
L 8 HOH A 17 517 19 HOH HOH . 
L 8 HOH A 18 518 20 HOH HOH . 
L 8 HOH A 19 519 21 HOH HOH . 
L 8 HOH A 20 520 22 HOH HOH . 
L 8 HOH A 21 521 23 HOH HOH . 
L 8 HOH A 22 522 24 HOH HOH . 
L 8 HOH A 23 523 25 HOH HOH . 
L 8 HOH A 24 524 26 HOH HOH . 
L 8 HOH A 25 525 27 HOH HOH . 
L 8 HOH A 26 526 28 HOH HOH . 
L 8 HOH A 27 527 29 HOH HOH . 
L 8 HOH A 28 528 30 HOH HOH . 
L 8 HOH A 29 529 32 HOH HOH . 
L 8 HOH A 30 530 33 HOH HOH . 
L 8 HOH A 31 531 34 HOH HOH . 
L 8 HOH A 32 532 35 HOH HOH . 
L 8 HOH A 33 533 36 HOH HOH . 
L 8 HOH A 34 534 37 HOH HOH . 
L 8 HOH A 35 535 38 HOH HOH . 
L 8 HOH A 36 536 39 HOH HOH . 
L 8 HOH A 37 537 40 HOH HOH . 
L 8 HOH A 38 538 41 HOH HOH . 
L 8 HOH A 39 539 42 HOH HOH . 
L 8 HOH A 40 540 43 HOH HOH . 
L 8 HOH A 41 541 44 HOH HOH . 
L 8 HOH A 42 542 45 HOH HOH . 
L 8 HOH A 43 543 46 HOH HOH . 
L 8 HOH A 44 544 47 HOH HOH . 
L 8 HOH A 45 545 48 HOH HOH . 
L 8 HOH A 46 546 49 HOH HOH . 
L 8 HOH A 47 547 50 HOH HOH . 
L 8 HOH A 48 548 51 HOH HOH . 
L 8 HOH A 49 549 52 HOH HOH . 
L 8 HOH A 50 550 53 HOH HOH . 
L 8 HOH A 51 551 54 HOH HOH . 
L 8 HOH A 52 552 55 HOH HOH . 
L 8 HOH A 53 553 56 HOH HOH . 
L 8 HOH A 54 554 57 HOH HOH . 
L 8 HOH A 55 555 58 HOH HOH . 
L 8 HOH A 56 556 59 HOH HOH . 
L 8 HOH A 57 557 60 HOH HOH . 
L 8 HOH A 58 558 61 HOH HOH . 
L 8 HOH A 59 559 62 HOH HOH . 
L 8 HOH A 60 560 63 HOH HOH . 
L 8 HOH A 61 561 64 HOH HOH . 
L 8 HOH A 62 562 65 HOH HOH . 
L 8 HOH A 63 563 66 HOH HOH . 
L 8 HOH A 64 564 67 HOH HOH . 
L 8 HOH A 65 565 68 HOH HOH . 
L 8 HOH A 66 566 69 HOH HOH . 
L 8 HOH A 67 567 70 HOH HOH . 
L 8 HOH A 68 568 71 HOH HOH . 
L 8 HOH A 69 569 72 HOH HOH . 
L 8 HOH A 70 570 73 HOH HOH . 
L 8 HOH A 71 571 74 HOH HOH . 
L 8 HOH A 72 572 75 HOH HOH . 
L 8 HOH A 73 573 76 HOH HOH . 
L 8 HOH A 74 574 77 HOH HOH . 
L 8 HOH A 75 575 79 HOH HOH . 
L 8 HOH A 76 576 80 HOH HOH . 
L 8 HOH A 77 577 81 HOH HOH . 
L 8 HOH A 78 578 82 HOH HOH . 
L 8 HOH A 79 579 83 HOH HOH . 
L 8 HOH A 80 580 84 HOH HOH . 
L 8 HOH A 81 581 85 HOH HOH . 
L 8 HOH A 82 582 86 HOH HOH . 
L 8 HOH A 83 583 87 HOH HOH . 
L 8 HOH A 84 584 88 HOH HOH . 
L 8 HOH A 85 585 89 HOH HOH . 
L 8 HOH A 86 586 90 HOH HOH . 
L 8 HOH A 87 587 91 HOH HOH . 
L 8 HOH A 88 588 93 HOH HOH . 
L 8 HOH A 89 589 94 HOH HOH . 
L 8 HOH A 90 590 95 HOH HOH . 
L 8 HOH A 91 591 96 HOH HOH . 
L 8 HOH A 92 592 97 HOH HOH . 
L 8 HOH A 93 593 98 HOH HOH . 
L 8 HOH A 94 594 99 HOH HOH . 
L 8 HOH A 95 595 100 HOH HOH . 
L 8 HOH A 96 596 101 HOH HOH . 
L 8 HOH A 97 597 102 HOH HOH . 
L 8 HOH A 98 598 103 HOH HOH . 
L 8 HOH A 99 599 104 HOH HOH . 
L 8 HOH A 100 600 105 HOH HOH . 
L 8 HOH A 101 601 106 HOH HOH . 
L 8 HOH A 102 602 107 HOH HOH . 
L 8 HOH A 103 603 108 HOH HOH . 
L 8 HOH A 104 604 109 HOH HOH . 
L 8 HOH A 105 605 110 HOH HOH . 
L 8 HOH A 106 606 111 HOH HOH . 
L 8 HOH A 107 607 112 HOH HOH . 
L 8 HOH A 108 608 113 HOH HOH . 
L 8 HOH A 109 609 114 HOH HOH . 
L 8 HOH A 110 610 115 HOH HOH . 
L 8 HOH A 111 611 117 HOH HOH . 
L 8 HOH A 112 612 119 HOH HOH . 
L 8 HOH A 113 613 120 HOH HOH . 
L 8 HOH A 114 614 122 HOH HOH . 
L 8 HOH A 115 615 123 HOH HOH . 
L 8 HOH A 116 616 124 HOH HOH . 
L 8 HOH A 117 617 125 HOH HOH . 
L 8 HOH A 118 618 126 HOH HOH . 
L 8 HOH A 119 619 127 HOH HOH . 
L 8 HOH A 120 620 128 HOH HOH . 
L 8 HOH A 121 621 129 HOH HOH . 
L 8 HOH A 122 622 130 HOH HOH . 
L 8 HOH A 123 623 131 HOH HOH . 
L 8 HOH A 124 624 132 HOH HOH . 
L 8 HOH A 125 625 133 HOH HOH . 
L 8 HOH A 126 626 134 HOH HOH . 
L 8 HOH A 127 627 135 HOH HOH . 
L 8 HOH A 128 628 136 HOH HOH . 
L 8 HOH A 129 629 137 HOH HOH . 
L 8 HOH A 130 630 138 HOH HOH . 
L 8 HOH A 131 631 139 HOH HOH . 
L 8 HOH A 132 632 140 HOH HOH . 
L 8 HOH A 133 633 141 HOH HOH . 
L 8 HOH A 134 634 143 HOH HOH . 
L 8 HOH A 135 635 144 HOH HOH . 
L 8 HOH A 136 636 145 HOH HOH . 
L 8 HOH A 137 637 146 HOH HOH . 
L 8 HOH A 138 638 147 HOH HOH . 
L 8 HOH A 139 639 148 HOH HOH . 
L 8 HOH A 140 640 149 HOH HOH . 
L 8 HOH A 141 641 151 HOH HOH . 
L 8 HOH A 142 642 152 HOH HOH . 
L 8 HOH A 143 643 154 HOH HOH . 
L 8 HOH A 144 644 155 HOH HOH . 
L 8 HOH A 145 645 156 HOH HOH . 
L 8 HOH A 146 646 157 HOH HOH . 
L 8 HOH A 147 647 158 HOH HOH . 
L 8 HOH A 148 648 160 HOH HOH . 
L 8 HOH A 149 649 161 HOH HOH . 
L 8 HOH A 150 650 162 HOH HOH . 
L 8 HOH A 151 651 163 HOH HOH . 
L 8 HOH A 152 652 165 HOH HOH . 
L 8 HOH A 153 653 166 HOH HOH . 
L 8 HOH A 154 654 168 HOH HOH . 
L 8 HOH A 155 655 169 HOH HOH . 
L 8 HOH A 156 656 171 HOH HOH . 
L 8 HOH A 157 657 172 HOH HOH . 
L 8 HOH A 158 658 175 HOH HOH . 
L 8 HOH A 159 659 177 HOH HOH . 
L 8 HOH A 160 660 178 HOH HOH . 
L 8 HOH A 161 661 179 HOH HOH . 
L 8 HOH A 162 662 180 HOH HOH . 
L 8 HOH A 163 663 183 HOH HOH . 
L 8 HOH A 164 664 184 HOH HOH . 
L 8 HOH A 165 665 185 HOH HOH . 
L 8 HOH A 166 666 186 HOH HOH . 
L 8 HOH A 167 667 187 HOH HOH . 
L 8 HOH A 168 668 191 HOH HOH . 
L 8 HOH A 169 669 192 HOH HOH . 
L 8 HOH A 170 670 193 HOH HOH . 
L 8 HOH A 171 671 194 HOH HOH . 
L 8 HOH A 172 672 195 HOH HOH . 
L 8 HOH A 173 673 196 HOH HOH . 
L 8 HOH A 174 674 197 HOH HOH . 
L 8 HOH A 175 675 198 HOH HOH . 
L 8 HOH A 176 676 201 HOH HOH . 
L 8 HOH A 177 677 202 HOH HOH . 
L 8 HOH A 178 678 203 HOH HOH . 
L 8 HOH A 179 679 204 HOH HOH . 
L 8 HOH A 180 680 207 HOH HOH . 
L 8 HOH A 181 681 209 HOH HOH . 
L 8 HOH A 182 682 210 HOH HOH . 
L 8 HOH A 183 683 211 HOH HOH . 
L 8 HOH A 184 684 212 HOH HOH . 
L 8 HOH A 185 685 213 HOH HOH . 
L 8 HOH A 186 686 214 HOH HOH . 
L 8 HOH A 187 687 215 HOH HOH . 
M 8 HOH B 1 501 9 HOH HOH . 
M 8 HOH B 2 502 14 HOH HOH . 
M 8 HOH B 3 503 31 HOH HOH . 
M 8 HOH B 4 504 78 HOH HOH . 
M 8 HOH B 5 505 92 HOH HOH . 
M 8 HOH B 6 506 116 HOH HOH . 
M 8 HOH B 7 507 118 HOH HOH . 
M 8 HOH B 8 508 121 HOH HOH . 
M 8 HOH B 9 509 159 HOH HOH . 
M 8 HOH B 10 510 199 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 3 8.549 37.748 -28.764 1 80.93 ? C1 GOL 402 A 1 
HETATM 2 O O1 GOL . . . D 3 7.561 38.164 -27.846 1 77.14 ? O1 GOL 402 A 1 
HETATM 3 C C2 GOL . . . D 3 9.031 36.34 -28.428 1 83.62 ? C2 GOL 402 A 1 
HETATM 4 O O2 GOL . . . D 3 10.264 36.407 -27.739 1 83.93 ? O2 GOL 402 A 1 
HETATM 5 C C3 GOL . . . D 3 9.191 35.534 -29.716 1 83.75 ? C3 GOL 402 A 1 
HETATM 6 O O3 GOL . . . D 3 9.764 34.272 -29.446 1 83.82 ? O3 GOL 402 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           6 
#