data_4NM6 # _model_server_result.job_id C4VIlk-cpEmKHLpiFbTxdA _model_server_result.datetime_utc '2024-11-23 00:16:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4nm6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":2002}' # _entry.id 4NM6 # _exptl.entry_id 4NM6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4NM6 _cell.length_a 48.296 _cell.length_b 88.186 _cell.length_c 262.962 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4NM6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O3' DC 5 B DC 5 1_555 B P 5CM 6 B 5CM 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.613 ? covale ? covale2 B O3' 5CM 6 B 5CM 6 1_555 B P DG 7 B DG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.61 ? covale ? covale3 C O3' DC 5 C DC 5 1_555 C P 5CM 6 C 5CM 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.606 ? covale ? covale4 C O3' 5CM 6 C 5CM 6 1_555 C P DG 7 C DG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.612 ? metalc ? metalc1 A SG CYS 8 A CYS 1133 1_555 E ZN ZN . A ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc2 A SG CYS 10 A CYS 1135 1_555 E ZN ZN . A ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc3 A SG CYS 68 A CYS 1193 1_555 D ZN ZN . A ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc4 A ND1 HIS 94 A HIS 1219 1_555 E ZN ZN . A ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc5 A SG CYS 96 A CYS 1221 1_555 E ZN ZN . A ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc6 A SG CYS 146 A CYS 1271 1_555 D ZN ZN . A ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? metalc ? metalc7 A SG CYS 148 A CYS 1273 1_555 D ZN ZN . A ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? metalc ? metalc8 A SG CYS 164 A CYS 1289 1_555 F ZN ZN . A ZN 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? metalc ? metalc9 A SG CYS 173 A CYS 1298 1_555 F ZN ZN . A ZN 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc10 A SG CYS 233 A CYS 1358 1_555 F ZN ZN . A ZN 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? metalc ? metalc11 A NE2 HIS 255 A HIS 1380 1_555 D ZN ZN . A ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc12 A NE2 HIS 257 A HIS 1382 1_555 G FE FE2 . A FE2 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc13 A OD1 ASP 259 A ASP 1384 1_555 G FE FE2 . A FE2 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? metalc ? metalc14 A NE2 HIS 408 A HIS 1881 1_555 G FE FE2 . A FE2 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc15 A ND1 HIS 439 A HIS 1912 1_555 F ZN ZN . A ZN 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc16 G FE FE2 . A FE2 2004 1_555 H O1 OGA . A OGA 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc17 G FE FE2 . A FE2 2004 1_555 H O2' OGA . A OGA 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc18 G FE FE2 . A FE2 2004 1_555 I O HOH . A HOH 2149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? hydrog 'DC-DG PAIR' hydrog1 B N4 DC 2 B DC 2 1_555 C O6 DG 11 C DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N3 DC 3 B DC 3 1_555 C N1 DG 10 C DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B N4 DC 3 B DC 3 1_555 C O6 DG 10 C DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B O2 DC 3 B DC 3 1_555 C N2 DG 10 C DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B N1 DA 4 B DA 4 1_555 C N3 DT 9 C DT 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B N6 DA 4 B DA 4 1_555 C O4 DT 9 C DT 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N3 DC 5 B DC 5 1_555 C N1 DG 8 C DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B N4 DC 5 B DC 5 1_555 C O6 DG 8 C DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B O2 DC 5 B DC 5 1_555 C N2 DG 8 C DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-5CM PAIR' hydrog10 B N1 DG 7 B DG 7 1_555 C N3 5CM 6 C 5CM 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DC PAIR' hydrog11 B N2 DG 8 B DG 8 1_555 C N3 DC 5 C DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B N3 DT 9 B DT 9 1_555 C N1 DA 4 C DA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B O4 DT 9 B DT 9 1_555 C N6 DA 4 C DA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DC PAIR' hydrog14 B O6 DG 10 B DG 10 1_555 C N4 DC 3 C DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4NM6 _atom_sites.fract_transf_matrix[1][1] 0.020706 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01134 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003803 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 ZN A 1 2001 1 ZN ZN . E 3 ZN A 1 2002 2 ZN ZN . F 3 ZN A 1 2003 3 ZN ZN . G 4 FE2 A 1 2004 4 FE2 FE . H 5 OGA A 1 2005 5 OGA OGA . I 6 HOH A 1 2101 2001 HOH HOH . I 6 HOH A 2 2102 2002 HOH HOH . I 6 HOH A 3 2103 2003 HOH HOH . I 6 HOH A 4 2104 2004 HOH HOH . I 6 HOH A 5 2105 2005 HOH HOH . I 6 HOH A 6 2106 2007 HOH HOH . I 6 HOH A 7 2107 2008 HOH HOH . I 6 HOH A 8 2108 2009 HOH HOH . I 6 HOH A 9 2109 2010 HOH HOH . I 6 HOH A 10 2110 2011 HOH HOH . I 6 HOH A 11 2111 2012 HOH HOH . I 6 HOH A 12 2112 2013 HOH HOH . I 6 HOH A 13 2113 2014 HOH HOH . I 6 HOH A 14 2114 2016 HOH HOH . I 6 HOH A 15 2115 2017 HOH HOH . I 6 HOH A 16 2116 2018 HOH HOH . I 6 HOH A 17 2117 2019 HOH HOH . I 6 HOH A 18 2118 2020 HOH HOH . I 6 HOH A 19 2119 2021 HOH HOH . I 6 HOH A 20 2120 2022 HOH HOH . I 6 HOH A 21 2121 2023 HOH HOH . I 6 HOH A 22 2122 2024 HOH HOH . I 6 HOH A 23 2123 2025 HOH HOH . I 6 HOH A 24 2124 2026 HOH HOH . I 6 HOH A 25 2125 2028 HOH HOH . I 6 HOH A 26 2126 2029 HOH HOH . I 6 HOH A 27 2127 2030 HOH HOH . I 6 HOH A 28 2128 2033 HOH HOH . I 6 HOH A 29 2129 2035 HOH HOH . I 6 HOH A 30 2130 2036 HOH HOH . I 6 HOH A 31 2131 2037 HOH HOH . I 6 HOH A 32 2132 2038 HOH HOH . I 6 HOH A 33 2133 2039 HOH HOH . I 6 HOH A 34 2134 2040 HOH HOH . I 6 HOH A 35 2135 2041 HOH HOH . I 6 HOH A 36 2136 2044 HOH HOH . I 6 HOH A 37 2137 2045 HOH HOH . I 6 HOH A 38 2138 2046 HOH HOH . I 6 HOH A 39 2139 2047 HOH HOH . I 6 HOH A 40 2140 2048 HOH HOH . I 6 HOH A 41 2141 2049 HOH HOH . I 6 HOH A 42 2142 2050 HOH HOH . I 6 HOH A 43 2143 2051 HOH HOH . I 6 HOH A 44 2144 2052 HOH HOH . I 6 HOH A 45 2145 2053 HOH HOH . I 6 HOH A 46 2146 2054 HOH HOH . I 6 HOH A 47 2147 2055 HOH HOH . I 6 HOH A 48 2148 2056 HOH HOH . I 6 HOH A 49 2149 2058 HOH HOH . I 6 HOH A 50 2150 2059 HOH HOH . I 6 HOH A 51 2151 2060 HOH HOH . I 6 HOH A 52 2152 2062 HOH HOH . I 6 HOH A 53 2153 2063 HOH HOH . I 6 HOH A 54 2154 2067 HOH HOH . I 6 HOH A 55 2155 2068 HOH HOH . I 6 HOH A 56 2156 2069 HOH HOH . I 6 HOH A 57 2157 2070 HOH HOH . I 6 HOH A 58 2158 2072 HOH HOH . I 6 HOH A 59 2159 2074 HOH HOH . I 6 HOH A 60 2160 2075 HOH HOH . I 6 HOH A 61 2161 2077 HOH HOH . I 6 HOH A 62 2162 2078 HOH HOH . I 6 HOH A 63 2163 2080 HOH HOH . I 6 HOH A 64 2164 2084 HOH HOH . I 6 HOH A 65 2165 2085 HOH HOH . I 6 HOH A 66 2166 2094 HOH HOH . I 6 HOH A 67 2167 2095 HOH HOH . I 6 HOH A 68 2168 2096 HOH HOH . I 6 HOH A 69 2169 2098 HOH HOH . I 6 HOH A 70 2170 2100 HOH HOH . I 6 HOH A 71 2171 2101 HOH HOH . I 6 HOH A 72 2172 2102 HOH HOH . I 6 HOH A 73 2173 2103 HOH HOH . I 6 HOH A 74 2174 2104 HOH HOH . I 6 HOH A 75 2175 2105 HOH HOH . I 6 HOH A 76 2176 2107 HOH HOH . I 6 HOH A 77 2177 2109 HOH HOH . I 6 HOH A 78 2178 2110 HOH HOH . I 6 HOH A 79 2179 2111 HOH HOH . I 6 HOH A 80 2180 2117 HOH HOH . I 6 HOH A 81 2181 2118 HOH HOH . I 6 HOH A 82 2182 2119 HOH HOH . I 6 HOH A 83 2183 2121 HOH HOH . I 6 HOH A 84 2184 2122 HOH HOH . I 6 HOH A 85 2185 2124 HOH HOH . I 6 HOH A 86 2186 2126 HOH HOH . I 6 HOH A 87 2187 2128 HOH HOH . I 6 HOH A 88 2188 2130 HOH HOH . I 6 HOH A 89 2189 2131 HOH HOH . I 6 HOH A 90 2190 2135 HOH HOH . I 6 HOH A 91 2191 2137 HOH HOH . I 6 HOH A 92 2192 2138 HOH HOH . I 6 HOH A 93 2193 2140 HOH HOH . I 6 HOH A 94 2194 2141 HOH HOH . I 6 HOH A 95 2195 2142 HOH HOH . I 6 HOH A 96 2196 2144 HOH HOH . I 6 HOH A 97 2197 2146 HOH HOH . I 6 HOH A 98 2198 2147 HOH HOH . I 6 HOH A 99 2199 2149 HOH HOH . I 6 HOH A 100 2200 2151 HOH HOH . I 6 HOH A 101 2201 2156 HOH HOH . I 6 HOH A 102 2202 2157 HOH HOH . I 6 HOH A 103 2203 2158 HOH HOH . I 6 HOH A 104 2204 2161 HOH HOH . I 6 HOH A 105 2205 2162 HOH HOH . I 6 HOH A 106 2206 2166 HOH HOH . I 6 HOH A 107 2207 2167 HOH HOH . I 6 HOH A 108 2208 2168 HOH HOH . I 6 HOH A 109 2209 2170 HOH HOH . I 6 HOH A 110 2210 2172 HOH HOH . I 6 HOH A 111 2211 2176 HOH HOH . I 6 HOH A 112 2212 2177 HOH HOH . I 6 HOH A 113 2213 2179 HOH HOH . I 6 HOH A 114 2214 2181 HOH HOH . I 6 HOH A 115 2215 2182 HOH HOH . I 6 HOH A 116 2216 2183 HOH HOH . I 6 HOH A 117 2217 2185 HOH HOH . I 6 HOH A 118 2218 2191 HOH HOH . I 6 HOH A 119 2219 2192 HOH HOH . I 6 HOH A 120 2220 2193 HOH HOH . I 6 HOH A 121 2221 2196 HOH HOH . I 6 HOH A 122 2222 2197 HOH HOH . I 6 HOH A 123 2223 2198 HOH HOH . I 6 HOH A 124 2224 2199 HOH HOH . I 6 HOH A 125 2225 2209 HOH HOH . I 6 HOH A 126 2226 2217 HOH HOH . I 6 HOH A 127 2227 2218 HOH HOH . J 6 HOH B 1 101 2031 HOH HOH . J 6 HOH B 2 102 2043 HOH HOH . J 6 HOH B 3 103 2114 HOH HOH . J 6 HOH B 4 104 2219 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x -6.262 _atom_site.Cartn_y 21.111 _atom_site.Cartn_z -54.3 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 77.76 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 2002 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #