data_4NM7
#
_model_server_result.job_id            BTPi_j5t6YKrqkPNrGjEjg 
_model_server_result.datetime_utc      '2024-11-23 11:42:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4nm7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":408}' 
#
_entry.id    4NM7 
#
_exptl.entry_id    4NM7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              154.251 
_entity.id                          8 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2,3-DIHYDROXY-1,4-DITHIOBUTANE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4NM7 
_cell.length_a            82.002 
_cell.length_b            82.002 
_cell.length_c            280.345 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4NM7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      8 
_struct_asym.id                             K 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C C PRO 5 C PRO 1606 1_555 C N SEP 6 C SEP 1607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale2 C C SEP 6 C SEP 1607 1_555 C N PRO 7 C PRO 1608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? 
metalc ? metalc1 A OD1 ASN 174 A ASN 186 1_555 I MG MG . A MG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? 
metalc ? metalc2 A OD1 ASP 188 A ASP 200 1_555 H MG MG . A MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? 
metalc ? metalc3 A OD2 ASP 188 A ASP 200 1_555 I MG MG . A MG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? 
metalc ? metalc4 D O2B ADP . A ADP 401 1_555 H MG MG . A MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? 
metalc ? metalc5 D O1A ADP . A ADP 401 1_555 I MG MG . A MG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? 
metalc ? metalc6 D O1B ADP . A ADP 401 1_555 I MG MG . A MG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? 
metalc ? metalc7 H MG MG . A MG 405 1_555 L O HOH . A HOH 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.918 ? 
metalc ? metalc8 H MG MG . A MG 405 1_555 L O HOH . A HOH 539 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? 
metalc ? metalc9 I MG MG . A MG 406 1_555 L O HOH . A HOH 571 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? 
metalc ? metalc10 I MG MG . A MG 406 1_555 L O HOH . A HOH 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? 
#
_chem_comp.formula           'C4 H10 O2 S2' 
_chem_comp.formula_weight    154.251 
_chem_comp.id                DTT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2,3-DIHYDROXY-1,4-DITHIOBUTANE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1,4-DITHIOTHREITOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S1 C1 DTT sing 127 n n 
S1 HS1 DTT sing 128 n n 
C1 C2 DTT sing 129 n n 
C1 H11 DTT sing 130 n n 
C1 H12 DTT sing 131 n n 
C2 O2 DTT sing 132 n n 
C2 C3 DTT sing 133 n n 
C2 H2 DTT sing 134 n n 
O2 HO2 DTT sing 135 n n 
C3 O3 DTT sing 136 n n 
C3 C4 DTT sing 137 n n 
C3 H3 DTT sing 138 n n 
O3 HO3 DTT sing 139 n n 
C4 S4 DTT sing 140 n n 
C4 H41 DTT sing 141 n n 
C4 H42 DTT sing 142 n n 
S4 HS2 DTT sing 143 n n 
#
_atom_sites.entry_id                     4NM7 
_atom_sites.fract_transf_matrix[1][1]    0.012195 
_atom_sites.fract_transf_matrix[1][2]    0.007041 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014081 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003567 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 ADP A 1 401 1 ADP ADP . 
E 5 GOL A 1 402 1 GOL GOL . 
F 5 GOL A 1 403 2 GOL GOL . 
G 5 GOL A 1 404 4 GOL GOL . 
H 6 MG A 1 405 1 MG MG . 
I 6 MG A 1 406 2 MG MG . 
J 7 CL A 1 407 1 CL CL . 
K 8 DTT A 1 408 1 DTT DTT . 
L 9 HOH A 1 501 1 HOH HOH . 
L 9 HOH A 2 502 2 HOH HOH . 
L 9 HOH A 3 503 3 HOH HOH . 
L 9 HOH A 4 504 4 HOH HOH . 
L 9 HOH A 5 505 5 HOH HOH . 
L 9 HOH A 6 506 6 HOH HOH . 
L 9 HOH A 7 507 7 HOH HOH . 
L 9 HOH A 8 508 8 HOH HOH . 
L 9 HOH A 9 509 9 HOH HOH . 
L 9 HOH A 10 510 10 HOH HOH . 
L 9 HOH A 11 511 11 HOH HOH . 
L 9 HOH A 12 512 12 HOH HOH . 
L 9 HOH A 13 513 13 HOH HOH . 
L 9 HOH A 14 514 14 HOH HOH . 
L 9 HOH A 15 515 15 HOH HOH . 
L 9 HOH A 16 516 16 HOH HOH . 
L 9 HOH A 17 517 17 HOH HOH . 
L 9 HOH A 18 518 18 HOH HOH . 
L 9 HOH A 19 519 19 HOH HOH . 
L 9 HOH A 20 520 20 HOH HOH . 
L 9 HOH A 21 521 21 HOH HOH . 
L 9 HOH A 22 522 22 HOH HOH . 
L 9 HOH A 23 523 23 HOH HOH . 
L 9 HOH A 24 524 25 HOH HOH . 
L 9 HOH A 25 525 26 HOH HOH . 
L 9 HOH A 26 526 27 HOH HOH . 
L 9 HOH A 27 527 28 HOH HOH . 
L 9 HOH A 28 528 29 HOH HOH . 
L 9 HOH A 29 529 30 HOH HOH . 
L 9 HOH A 30 530 31 HOH HOH . 
L 9 HOH A 31 531 32 HOH HOH . 
L 9 HOH A 32 532 33 HOH HOH . 
L 9 HOH A 33 533 34 HOH HOH . 
L 9 HOH A 34 534 35 HOH HOH . 
L 9 HOH A 35 535 36 HOH HOH . 
L 9 HOH A 36 536 37 HOH HOH . 
L 9 HOH A 37 537 38 HOH HOH . 
L 9 HOH A 38 538 39 HOH HOH . 
L 9 HOH A 39 539 40 HOH HOH . 
L 9 HOH A 40 540 41 HOH HOH . 
L 9 HOH A 41 541 42 HOH HOH . 
L 9 HOH A 42 542 44 HOH HOH . 
L 9 HOH A 43 543 45 HOH HOH . 
L 9 HOH A 44 544 46 HOH HOH . 
L 9 HOH A 45 545 47 HOH HOH . 
L 9 HOH A 46 546 48 HOH HOH . 
L 9 HOH A 47 547 49 HOH HOH . 
L 9 HOH A 48 548 50 HOH HOH . 
L 9 HOH A 49 549 52 HOH HOH . 
L 9 HOH A 50 550 54 HOH HOH . 
L 9 HOH A 51 551 55 HOH HOH . 
L 9 HOH A 52 552 56 HOH HOH . 
L 9 HOH A 53 553 60 HOH HOH . 
L 9 HOH A 54 554 61 HOH HOH . 
L 9 HOH A 55 555 62 HOH HOH . 
L 9 HOH A 56 556 63 HOH HOH . 
L 9 HOH A 57 557 64 HOH HOH . 
L 9 HOH A 58 558 65 HOH HOH . 
L 9 HOH A 59 559 67 HOH HOH . 
L 9 HOH A 60 560 69 HOH HOH . 
L 9 HOH A 61 561 70 HOH HOH . 
L 9 HOH A 62 562 71 HOH HOH . 
L 9 HOH A 63 563 72 HOH HOH . 
L 9 HOH A 64 564 73 HOH HOH . 
L 9 HOH A 65 565 74 HOH HOH . 
L 9 HOH A 66 566 75 HOH HOH . 
L 9 HOH A 67 567 76 HOH HOH . 
L 9 HOH A 68 568 77 HOH HOH . 
L 9 HOH A 69 569 79 HOH HOH . 
L 9 HOH A 70 570 81 HOH HOH . 
L 9 HOH A 71 571 82 HOH HOH . 
L 9 HOH A 72 572 83 HOH HOH . 
L 9 HOH A 73 573 84 HOH HOH . 
L 9 HOH A 74 574 85 HOH HOH . 
L 9 HOH A 75 575 86 HOH HOH . 
L 9 HOH A 76 576 87 HOH HOH . 
L 9 HOH A 77 577 88 HOH HOH . 
L 9 HOH A 78 578 89 HOH HOH . 
L 9 HOH A 79 579 91 HOH HOH . 
L 9 HOH A 80 580 92 HOH HOH . 
L 9 HOH A 81 581 93 HOH HOH . 
L 9 HOH A 82 582 94 HOH HOH . 
L 9 HOH A 83 583 95 HOH HOH . 
L 9 HOH A 84 584 96 HOH HOH . 
L 9 HOH A 85 585 97 HOH HOH . 
L 9 HOH A 86 586 98 HOH HOH . 
L 9 HOH A 87 587 99 HOH HOH . 
L 9 HOH A 88 588 100 HOH HOH . 
L 9 HOH A 89 589 101 HOH HOH . 
L 9 HOH A 90 590 102 HOH HOH . 
L 9 HOH A 91 591 103 HOH HOH . 
L 9 HOH A 92 592 104 HOH HOH . 
L 9 HOH A 93 593 105 HOH HOH . 
L 9 HOH A 94 594 106 HOH HOH . 
L 9 HOH A 95 595 107 HOH HOH . 
M 9 HOH B 1 501 24 HOH HOH . 
M 9 HOH B 2 502 43 HOH HOH . 
M 9 HOH B 3 503 51 HOH HOH . 
M 9 HOH B 4 504 53 HOH HOH . 
M 9 HOH B 5 505 57 HOH HOH . 
M 9 HOH B 6 506 58 HOH HOH . 
M 9 HOH B 7 507 59 HOH HOH . 
M 9 HOH B 8 508 66 HOH HOH . 
M 9 HOH B 9 509 78 HOH HOH . 
M 9 HOH B 10 510 80 HOH HOH . 
N 9 HOH C 1 1701 68 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S1 DTT . . . K 8 -12.393 19.119 -27.533 1 155.56 ? S1 DTT 408 A 1 
HETATM 2 C C1 DTT . . . K 8 -10.709 18.835 -26.933 1 123.18 ? C1 DTT 408 A 1 
HETATM 3 C C2 DTT . . . K 8 -10.045 17.632 -27.594 1 124.99 ? C2 DTT 408 A 1 
HETATM 4 O O2 DTT . . . K 8 -8.854 17.313 -26.909 1 123.9 ? O2 DTT 408 A 1 
HETATM 5 C C3 DTT . . . K 8 -9.724 17.922 -29.055 1 127.83 ? C3 DTT 408 A 1 
HETATM 6 O O3 DTT . . . K 8 -8.332 18.093 -29.203 1 127.58 ? O3 DTT 408 A 1 
HETATM 7 C C4 DTT . . . K 8 -10.196 16.789 -29.961 1 129.14 ? C4 DTT 408 A 1 
HETATM 8 S S4 DTT . . . K 8 -11.632 17.255 -30.96 1 131.56 ? S4 DTT 408 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           282 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           8 
#