data_4NML
#
_model_server_result.job_id            flpaHjMaPA9nNFyfEQNubQ 
_model_server_result.datetime_utc      '2024-11-22 21:06:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4nml 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":303}' 
#
_entry.id    4NML 
#
_exptl.entry_id    4NML 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              134.087 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            D-MALATE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4NML 
_cell.length_a            95.59 
_cell.length_b            95.59 
_cell.length_c            112.694 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4NML 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        91 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E 1 1 
A,B,C,D,E 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 6_565 x,-y+1,-z+1/2 1 0 0 0 -1 0 0 0 -1 0 95.59 56.347 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C MSE 1 A MSE 1 1_555 A N ASN 2 A ASN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale2 A C GLY 23 A GLY 23 1_555 A N MSE 24 A MSE 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? 
covale ? covale3 A C MSE 24 A MSE 24 1_555 A N LYS 25 A LYS 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale4 A C ARG 44 A ARG 44 1_555 A N MSE 45 A MSE 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale5 A C MSE 45 A MSE 45 1_555 A N GLN 46 A GLN 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale6 A C ASP 81 A ASP 81 1_555 A N CME 82 A CME 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? 
covale ? covale7 A C CME 82 A CME 82 1_555 A N LEU 83 A LEU 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.313 ? 
covale ? covale8 A C LYS 112 A LYS 112 1_555 A N MSE 113 A MSE 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
covale ? covale9 A C MSE 113 A MSE 113 1_555 A N ILE 114 A ILE 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale10 A C GLU 218 A GLU 218 1_555 A N MSE 219 A MSE 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale11 A C MSE 219 A MSE 219 1_555 A N ASP 220 A ASP 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
#
_chem_comp.formula           'C4 H6 O5' 
_chem_comp.formula_weight    134.087 
_chem_comp.id                MLT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              D-MALATE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '(2R)-2-HYDROXYBUTANEDIOIC ACID;2-HYDROXY-SUCCINIC ACID' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 MLT doub 239 n n 
C1 O2 MLT sing 240 n n 
C1 C2 MLT sing 241 n n 
C2 O3 MLT sing 242 n n 
C2 C3 MLT sing 243 n n 
C2 H2 MLT sing 244 n n 
O3 HO3 MLT sing 245 n n 
C3 C4 MLT sing 246 n n 
C3 H31 MLT sing 247 n n 
C3 H32 MLT sing 248 n n 
C4 O4 MLT doub 249 n n 
C4 O5 MLT sing 250 n n 
O5 HO5 MLT sing 251 n n 
O2 H6 MLT sing 252 n n 
#
_atom_sites.entry_id                     4NML 
_atom_sites.fract_transf_matrix[1][1]    0.010461 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010461 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008874 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CL A 1 301 1 CL CL . 
C 2 CL A 1 302 2 CL CL . 
D 3 MLT A 1 303 3 MLT MLT . 
E 4 HOH A 1 401 4 HOH HOH . 
E 4 HOH A 2 402 5 HOH HOH . 
E 4 HOH A 3 403 6 HOH HOH . 
E 4 HOH A 4 404 7 HOH HOH . 
E 4 HOH A 5 405 8 HOH HOH . 
E 4 HOH A 6 406 9 HOH HOH . 
E 4 HOH A 7 407 10 HOH HOH . 
E 4 HOH A 8 408 11 HOH HOH . 
E 4 HOH A 9 409 12 HOH HOH . 
E 4 HOH A 10 410 13 HOH HOH . 
E 4 HOH A 11 411 14 HOH HOH . 
E 4 HOH A 12 412 15 HOH HOH . 
E 4 HOH A 13 413 16 HOH HOH . 
E 4 HOH A 14 414 17 HOH HOH . 
E 4 HOH A 15 415 18 HOH HOH . 
E 4 HOH A 16 416 19 HOH HOH . 
E 4 HOH A 17 417 20 HOH HOH . 
E 4 HOH A 18 418 21 HOH HOH . 
E 4 HOH A 19 419 22 HOH HOH . 
E 4 HOH A 20 420 23 HOH HOH . 
E 4 HOH A 21 421 24 HOH HOH . 
E 4 HOH A 22 422 25 HOH HOH . 
E 4 HOH A 23 423 26 HOH HOH . 
E 4 HOH A 24 424 27 HOH HOH . 
E 4 HOH A 25 425 28 HOH HOH . 
E 4 HOH A 26 426 29 HOH HOH . 
E 4 HOH A 27 427 30 HOH HOH . 
E 4 HOH A 28 428 31 HOH HOH . 
E 4 HOH A 29 429 32 HOH HOH . 
E 4 HOH A 30 430 33 HOH HOH . 
E 4 HOH A 31 431 34 HOH HOH . 
E 4 HOH A 32 432 35 HOH HOH . 
E 4 HOH A 33 433 36 HOH HOH . 
E 4 HOH A 34 434 37 HOH HOH . 
E 4 HOH A 35 435 38 HOH HOH . 
E 4 HOH A 36 436 39 HOH HOH . 
E 4 HOH A 37 437 40 HOH HOH . 
E 4 HOH A 38 438 41 HOH HOH . 
E 4 HOH A 39 439 42 HOH HOH . 
E 4 HOH A 40 440 43 HOH HOH . 
E 4 HOH A 41 441 44 HOH HOH . 
E 4 HOH A 42 442 45 HOH HOH . 
E 4 HOH A 43 443 46 HOH HOH . 
E 4 HOH A 44 444 47 HOH HOH . 
E 4 HOH A 45 445 48 HOH HOH . 
E 4 HOH A 46 446 49 HOH HOH . 
E 4 HOH A 47 447 50 HOH HOH . 
E 4 HOH A 48 448 51 HOH HOH . 
E 4 HOH A 49 449 52 HOH HOH . 
E 4 HOH A 50 450 53 HOH HOH . 
E 4 HOH A 51 451 55 HOH HOH . 
E 4 HOH A 52 452 56 HOH HOH . 
E 4 HOH A 53 453 57 HOH HOH . 
E 4 HOH A 54 454 58 HOH HOH . 
E 4 HOH A 55 455 59 HOH HOH . 
E 4 HOH A 56 456 60 HOH HOH . 
E 4 HOH A 57 457 61 HOH HOH . 
E 4 HOH A 58 458 62 HOH HOH . 
E 4 HOH A 59 459 63 HOH HOH . 
E 4 HOH A 60 460 64 HOH HOH . 
E 4 HOH A 61 461 65 HOH HOH . 
E 4 HOH A 62 462 66 HOH HOH . 
E 4 HOH A 63 463 68 HOH HOH . 
E 4 HOH A 64 464 69 HOH HOH . 
E 4 HOH A 65 465 70 HOH HOH . 
E 4 HOH A 66 466 71 HOH HOH . 
E 4 HOH A 67 467 72 HOH HOH . 
E 4 HOH A 68 468 73 HOH HOH . 
E 4 HOH A 69 469 74 HOH HOH . 
E 4 HOH A 70 470 75 HOH HOH . 
E 4 HOH A 71 471 76 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MLT . . . D 3 17.253 45.569 4.042 1 91.63 ? C1 MLT 303 A 1 
HETATM 2 O O1 MLT . . . D 3 17.537 45.093 2.926 1 69.13 ? O1 MLT 303 A 1 
HETATM 3 O O2 MLT . . . D 3 16.232 45.188 4.679 1 108.57 ? O2 MLT 303 A 1 
HETATM 4 C C2 MLT . . . D 3 18.162 46.656 4.589 1 89.88 ? C2 MLT 303 A 1 
HETATM 5 O O3 MLT . . . D 3 19.249 46.196 5.407 1 82.81 ? O3 MLT 303 A 1 
HETATM 6 C C3 MLT . . . D 3 17.354 47.66 5.407 1 80.93 ? C3 MLT 303 A 1 
HETATM 7 C C4 MLT . . . D 3 16.725 48.646 4.462 1 74.99 ? C4 MLT 303 A 1 
HETATM 8 O O4 MLT . . . D 3 17.049 48.666 3.245 1 71.07 ? O4 MLT 303 A 1 
HETATM 9 O O5 MLT . . . D 3 15.895 49.414 4.962 1 81.04 ? O5 MLT 303 A 1 
#
_model_server_stats.io_time_ms              64 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           265 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           9 
#