data_4NMP
#
_model_server_result.job_id            X4DLBq3WXAod7K98kZxt5Q 
_model_server_result.datetime_utc      '2024-11-27 04:44:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4nmp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":401}' 
#
_entry.id    4NMP 
#
_exptl.entry_id    4NMP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4NMP 
_cell.length_a            35.924 
_cell.length_b            47.659 
_cell.length_c            97.161 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4NMP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,G,I 1 1 
B,D,F,H,J 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C C PRO 6 C PRO 6 1_555 C N ALY 7 C ALY 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 sing 
covale ? covale2 C C ALY 7 C ALY 7 1_555 C N SER 8 C SER 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 sing 
covale ? covale3 D C PRO 6 D PRO 6 1_555 D N ALY 7 D ALY 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 sing 
covale ? covale4 D C ALY 7 D ALY 7 1_555 D N SER 8 D SER 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 sing 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 157 n n 
C1 C2 GOL sing 158 n n 
C1 H11 GOL sing 159 n n 
C1 H12 GOL sing 160 n n 
O1 HO1 GOL sing 161 n n 
C2 O2 GOL sing 162 n n 
C2 C3 GOL sing 163 n n 
C2 H2 GOL sing 164 n n 
O2 HO2 GOL sing 165 n n 
C3 O3 GOL sing 166 n n 
C3 H31 GOL sing 167 n n 
C3 H32 GOL sing 168 n n 
O3 HO3 GOL sing 169 n n 
#
_atom_sites.entry_id                     4NMP 
_atom_sites.fract_transf_matrix[1][1]    0.027837 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020982 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010292 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 GOL A 1 401 3 GOL GOL . 
F 3 GOL B 1 401 1 GOL GOL . 
G 4 HOH A 1 501 2 HOH HOH . 
G 4 HOH A 2 502 5 HOH HOH . 
G 4 HOH A 3 503 7 HOH HOH . 
G 4 HOH A 4 504 8 HOH HOH . 
G 4 HOH A 5 505 15 HOH HOH . 
G 4 HOH A 6 506 18 HOH HOH . 
G 4 HOH A 7 507 19 HOH HOH . 
G 4 HOH A 8 508 20 HOH HOH . 
G 4 HOH A 9 509 21 HOH HOH . 
G 4 HOH A 10 510 24 HOH HOH . 
G 4 HOH A 11 511 25 HOH HOH . 
G 4 HOH A 12 512 27 HOH HOH . 
G 4 HOH A 13 513 28 HOH HOH . 
G 4 HOH A 14 514 29 HOH HOH . 
G 4 HOH A 15 515 30 HOH HOH . 
G 4 HOH A 16 516 31 HOH HOH . 
G 4 HOH A 17 517 33 HOH HOH . 
G 4 HOH A 18 518 34 HOH HOH . 
G 4 HOH A 19 519 36 HOH HOH . 
G 4 HOH A 20 520 41 HOH HOH . 
G 4 HOH A 21 521 44 HOH HOH . 
G 4 HOH A 22 522 45 HOH HOH . 
G 4 HOH A 23 523 46 HOH HOH . 
G 4 HOH A 24 524 49 HOH HOH . 
G 4 HOH A 25 525 50 HOH HOH . 
G 4 HOH A 26 526 53 HOH HOH . 
G 4 HOH A 27 527 54 HOH HOH . 
G 4 HOH A 28 528 55 HOH HOH . 
G 4 HOH A 29 529 57 HOH HOH . 
G 4 HOH A 30 530 62 HOH HOH . 
G 4 HOH A 31 531 64 HOH HOH . 
G 4 HOH A 32 532 65 HOH HOH . 
G 4 HOH A 33 533 67 HOH HOH . 
G 4 HOH A 34 534 73 HOH HOH . 
G 4 HOH A 35 535 74 HOH HOH . 
G 4 HOH A 36 536 75 HOH HOH . 
G 4 HOH A 37 537 77 HOH HOH . 
G 4 HOH A 38 538 79 HOH HOH . 
G 4 HOH A 39 539 87 HOH HOH . 
G 4 HOH A 40 540 91 HOH HOH . 
G 4 HOH A 41 541 93 HOH HOH . 
G 4 HOH A 42 542 96 HOH HOH . 
G 4 HOH A 43 543 97 HOH HOH . 
G 4 HOH A 44 544 100 HOH HOH . 
G 4 HOH A 45 545 108 HOH HOH . 
G 4 HOH A 46 546 110 HOH HOH . 
G 4 HOH A 47 547 112 HOH HOH . 
G 4 HOH A 48 548 115 HOH HOH . 
G 4 HOH A 49 549 117 HOH HOH . 
G 4 HOH A 50 550 120 HOH HOH . 
G 4 HOH A 51 551 121 HOH HOH . 
G 4 HOH A 52 552 123 HOH HOH . 
G 4 HOH A 53 553 131 HOH HOH . 
G 4 HOH A 54 554 134 HOH HOH . 
G 4 HOH A 55 555 135 HOH HOH . 
G 4 HOH A 56 556 137 HOH HOH . 
G 4 HOH A 57 557 140 HOH HOH . 
G 4 HOH A 58 558 148 HOH HOH . 
G 4 HOH A 59 559 150 HOH HOH . 
G 4 HOH A 60 560 151 HOH HOH . 
G 4 HOH A 61 561 155 HOH HOH . 
G 4 HOH A 62 562 157 HOH HOH . 
G 4 HOH A 63 563 158 HOH HOH . 
G 4 HOH A 64 564 159 HOH HOH . 
G 4 HOH A 65 565 161 HOH HOH . 
G 4 HOH A 66 566 163 HOH HOH . 
G 4 HOH A 67 567 164 HOH HOH . 
G 4 HOH A 68 568 166 HOH HOH . 
G 4 HOH A 69 569 167 HOH HOH . 
G 4 HOH A 70 570 170 HOH HOH . 
G 4 HOH A 71 571 171 HOH HOH . 
G 4 HOH A 72 572 172 HOH HOH . 
G 4 HOH A 73 573 174 HOH HOH . 
G 4 HOH A 74 574 176 HOH HOH . 
G 4 HOH A 75 575 180 HOH HOH . 
G 4 HOH A 76 576 181 HOH HOH . 
G 4 HOH A 77 577 184 HOH HOH . 
G 4 HOH A 78 578 186 HOH HOH . 
G 4 HOH A 79 579 191 HOH HOH . 
G 4 HOH A 80 580 192 HOH HOH . 
G 4 HOH A 81 581 193 HOH HOH . 
G 4 HOH A 82 582 195 HOH HOH . 
G 4 HOH A 83 583 196 HOH HOH . 
G 4 HOH A 84 584 199 HOH HOH . 
G 4 HOH A 85 585 201 HOH HOH . 
G 4 HOH A 86 586 203 HOH HOH . 
G 4 HOH A 87 587 206 HOH HOH . 
G 4 HOH A 88 588 207 HOH HOH . 
G 4 HOH A 89 589 209 HOH HOH . 
G 4 HOH A 90 590 210 HOH HOH . 
G 4 HOH A 91 591 212 HOH HOH . 
G 4 HOH A 92 592 214 HOH HOH . 
H 4 HOH B 1 501 6 HOH HOH . 
H 4 HOH B 2 502 9 HOH HOH . 
H 4 HOH B 3 503 10 HOH HOH . 
H 4 HOH B 4 504 11 HOH HOH . 
H 4 HOH B 5 505 12 HOH HOH . 
H 4 HOH B 6 506 13 HOH HOH . 
H 4 HOH B 7 507 14 HOH HOH . 
H 4 HOH B 8 508 16 HOH HOH . 
H 4 HOH B 9 509 22 HOH HOH . 
H 4 HOH B 10 510 23 HOH HOH . 
H 4 HOH B 11 511 26 HOH HOH . 
H 4 HOH B 12 512 32 HOH HOH . 
H 4 HOH B 13 513 35 HOH HOH . 
H 4 HOH B 14 514 37 HOH HOH . 
H 4 HOH B 15 515 39 HOH HOH . 
H 4 HOH B 16 516 40 HOH HOH . 
H 4 HOH B 17 517 42 HOH HOH . 
H 4 HOH B 18 518 43 HOH HOH . 
H 4 HOH B 19 519 48 HOH HOH . 
H 4 HOH B 20 520 52 HOH HOH . 
H 4 HOH B 21 521 56 HOH HOH . 
H 4 HOH B 22 522 58 HOH HOH . 
H 4 HOH B 23 523 59 HOH HOH . 
H 4 HOH B 24 524 60 HOH HOH . 
H 4 HOH B 25 525 61 HOH HOH . 
H 4 HOH B 26 526 66 HOH HOH . 
H 4 HOH B 27 527 69 HOH HOH . 
H 4 HOH B 28 528 70 HOH HOH . 
H 4 HOH B 29 529 71 HOH HOH . 
H 4 HOH B 30 530 72 HOH HOH . 
H 4 HOH B 31 531 76 HOH HOH . 
H 4 HOH B 32 532 78 HOH HOH . 
H 4 HOH B 33 533 81 HOH HOH . 
H 4 HOH B 34 534 82 HOH HOH . 
H 4 HOH B 35 535 83 HOH HOH . 
H 4 HOH B 36 536 84 HOH HOH . 
H 4 HOH B 37 537 86 HOH HOH . 
H 4 HOH B 38 538 88 HOH HOH . 
H 4 HOH B 39 539 89 HOH HOH . 
H 4 HOH B 40 540 90 HOH HOH . 
H 4 HOH B 41 541 92 HOH HOH . 
H 4 HOH B 42 542 94 HOH HOH . 
H 4 HOH B 43 543 95 HOH HOH . 
H 4 HOH B 44 544 98 HOH HOH . 
H 4 HOH B 45 545 99 HOH HOH . 
H 4 HOH B 46 546 102 HOH HOH . 
H 4 HOH B 47 547 103 HOH HOH . 
H 4 HOH B 48 548 104 HOH HOH . 
H 4 HOH B 49 549 105 HOH HOH . 
H 4 HOH B 50 550 106 HOH HOH . 
H 4 HOH B 51 551 109 HOH HOH . 
H 4 HOH B 52 552 111 HOH HOH . 
H 4 HOH B 53 553 113 HOH HOH . 
H 4 HOH B 54 554 114 HOH HOH . 
H 4 HOH B 55 555 118 HOH HOH . 
H 4 HOH B 56 556 119 HOH HOH . 
H 4 HOH B 57 557 122 HOH HOH . 
H 4 HOH B 58 558 124 HOH HOH . 
H 4 HOH B 59 559 125 HOH HOH . 
H 4 HOH B 60 560 126 HOH HOH . 
H 4 HOH B 61 561 127 HOH HOH . 
H 4 HOH B 62 562 128 HOH HOH . 
H 4 HOH B 63 563 129 HOH HOH . 
H 4 HOH B 64 564 130 HOH HOH . 
H 4 HOH B 65 565 133 HOH HOH . 
H 4 HOH B 66 566 136 HOH HOH . 
H 4 HOH B 67 567 139 HOH HOH . 
H 4 HOH B 68 568 141 HOH HOH . 
H 4 HOH B 69 569 142 HOH HOH . 
H 4 HOH B 70 570 143 HOH HOH . 
H 4 HOH B 71 571 145 HOH HOH . 
H 4 HOH B 72 572 146 HOH HOH . 
H 4 HOH B 73 573 147 HOH HOH . 
H 4 HOH B 74 574 149 HOH HOH . 
H 4 HOH B 75 575 152 HOH HOH . 
H 4 HOH B 76 576 154 HOH HOH . 
H 4 HOH B 77 577 156 HOH HOH . 
H 4 HOH B 78 578 160 HOH HOH . 
H 4 HOH B 79 579 165 HOH HOH . 
H 4 HOH B 80 580 168 HOH HOH . 
H 4 HOH B 81 581 169 HOH HOH . 
H 4 HOH B 82 582 173 HOH HOH . 
H 4 HOH B 83 583 175 HOH HOH . 
H 4 HOH B 84 584 177 HOH HOH . 
H 4 HOH B 85 585 178 HOH HOH . 
H 4 HOH B 86 586 183 HOH HOH . 
H 4 HOH B 87 587 187 HOH HOH . 
H 4 HOH B 88 588 194 HOH HOH . 
H 4 HOH B 89 589 197 HOH HOH . 
H 4 HOH B 90 590 198 HOH HOH . 
H 4 HOH B 91 591 200 HOH HOH . 
H 4 HOH B 92 592 204 HOH HOH . 
H 4 HOH B 93 593 208 HOH HOH . 
H 4 HOH B 94 594 211 HOH HOH . 
H 4 HOH B 95 595 213 HOH HOH . 
H 4 HOH B 96 596 63 HOH HOH . 
H 4 HOH B 97 597 189 HOH HOH . 
I 4 HOH C 1 101 1 HOH HOH . 
I 4 HOH C 2 102 3 HOH HOH . 
I 4 HOH C 3 103 4 HOH HOH . 
I 4 HOH C 4 104 51 HOH HOH . 
I 4 HOH C 5 105 116 HOH HOH . 
I 4 HOH C 6 106 138 HOH HOH . 
I 4 HOH C 7 107 144 HOH HOH . 
I 4 HOH C 8 108 205 HOH HOH . 
J 4 HOH D 1 101 17 HOH HOH . 
J 4 HOH D 2 102 38 HOH HOH . 
J 4 HOH D 3 103 47 HOH HOH . 
J 4 HOH D 4 104 68 HOH HOH . 
J 4 HOH D 5 105 80 HOH HOH . 
J 4 HOH D 6 106 85 HOH HOH . 
J 4 HOH D 7 107 101 HOH HOH . 
J 4 HOH D 8 108 107 HOH HOH . 
J 4 HOH D 9 109 132 HOH HOH . 
J 4 HOH D 10 110 162 HOH HOH . 
J 4 HOH D 11 111 179 HOH HOH . 
J 4 HOH D 12 112 182 HOH HOH . 
J 4 HOH D 13 113 185 HOH HOH . 
J 4 HOH D 14 114 190 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . F 3 -2.806 14.88 32.038 1 17.2 ? C1 GOL 401 B 1 
HETATM 2 O O1 GOL . . . F 3 -3.559 16.072 32.089 1 20.05 ? O1 GOL 401 B 1 
HETATM 3 C C2 GOL . . . F 3 -3.555 13.775 32.778 1 17.81 ? C2 GOL 401 B 1 
HETATM 4 O O2 GOL . . . F 3 -4.754 13.447 32.098 1 16.04 ? O2 GOL 401 B 1 
HETATM 5 C C3 GOL . . . F 3 -2.654 12.551 32.91 1 16.89 ? C3 GOL 401 B 1 
HETATM 6 O O3 GOL . . . F 3 -3.35 11.506 33.557 1 21.03 ? O3 GOL 401 B 1 
#
_model_server_stats.io_time_ms              28 
_model_server_stats.parse_time_ms           38 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           1018 
_model_server_stats.encode_time_ms          21 
_model_server_stats.element_count           6 
#