data_4NMP # _model_server_result.job_id Qvam4RE1LdfDZ6Qaim-r1Q _model_server_result.datetime_utc '2024-11-08 16:00:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4nmp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":401}' # _entry.id 4NMP # _exptl.entry_id 4NMP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4NMP _cell.length_a 35.924 _cell.length_b 47.659 _cell.length_c 97.161 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4NMP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,G,I 1 1 B,D,F,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C PRO 6 C PRO 6 1_555 C N ALY 7 C ALY 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 sing covale ? covale2 C C ALY 7 C ALY 7 1_555 C N SER 8 C SER 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 sing covale ? covale3 D C PRO 6 D PRO 6 1_555 D N ALY 7 D ALY 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 sing covale ? covale4 D C ALY 7 D ALY 7 1_555 D N SER 8 D SER 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 sing # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 157 n n C1 C2 GOL sing 158 n n C1 H11 GOL sing 159 n n C1 H12 GOL sing 160 n n O1 HO1 GOL sing 161 n n C2 O2 GOL sing 162 n n C2 C3 GOL sing 163 n n C2 H2 GOL sing 164 n n O2 HO2 GOL sing 165 n n C3 O3 GOL sing 166 n n C3 H31 GOL sing 167 n n C3 H32 GOL sing 168 n n O3 HO3 GOL sing 169 n n # _atom_sites.entry_id 4NMP _atom_sites.fract_transf_matrix[1][1] 0.027837 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020982 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010292 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GOL A 1 401 3 GOL GOL . F 3 GOL B 1 401 1 GOL GOL . G 4 HOH A 1 501 2 HOH HOH . G 4 HOH A 2 502 5 HOH HOH . G 4 HOH A 3 503 7 HOH HOH . G 4 HOH A 4 504 8 HOH HOH . G 4 HOH A 5 505 15 HOH HOH . G 4 HOH A 6 506 18 HOH HOH . G 4 HOH A 7 507 19 HOH HOH . G 4 HOH A 8 508 20 HOH HOH . G 4 HOH A 9 509 21 HOH HOH . G 4 HOH A 10 510 24 HOH HOH . G 4 HOH A 11 511 25 HOH HOH . G 4 HOH A 12 512 27 HOH HOH . G 4 HOH A 13 513 28 HOH HOH . G 4 HOH A 14 514 29 HOH HOH . G 4 HOH A 15 515 30 HOH HOH . G 4 HOH A 16 516 31 HOH HOH . G 4 HOH A 17 517 33 HOH HOH . G 4 HOH A 18 518 34 HOH HOH . G 4 HOH A 19 519 36 HOH HOH . G 4 HOH A 20 520 41 HOH HOH . G 4 HOH A 21 521 44 HOH HOH . G 4 HOH A 22 522 45 HOH HOH . G 4 HOH A 23 523 46 HOH HOH . G 4 HOH A 24 524 49 HOH HOH . G 4 HOH A 25 525 50 HOH HOH . G 4 HOH A 26 526 53 HOH HOH . G 4 HOH A 27 527 54 HOH HOH . G 4 HOH A 28 528 55 HOH HOH . G 4 HOH A 29 529 57 HOH HOH . G 4 HOH A 30 530 62 HOH HOH . G 4 HOH A 31 531 64 HOH HOH . G 4 HOH A 32 532 65 HOH HOH . G 4 HOH A 33 533 67 HOH HOH . G 4 HOH A 34 534 73 HOH HOH . G 4 HOH A 35 535 74 HOH HOH . G 4 HOH A 36 536 75 HOH HOH . G 4 HOH A 37 537 77 HOH HOH . G 4 HOH A 38 538 79 HOH HOH . G 4 HOH A 39 539 87 HOH HOH . G 4 HOH A 40 540 91 HOH HOH . G 4 HOH A 41 541 93 HOH HOH . G 4 HOH A 42 542 96 HOH HOH . G 4 HOH A 43 543 97 HOH HOH . G 4 HOH A 44 544 100 HOH HOH . G 4 HOH A 45 545 108 HOH HOH . G 4 HOH A 46 546 110 HOH HOH . G 4 HOH A 47 547 112 HOH HOH . G 4 HOH A 48 548 115 HOH HOH . G 4 HOH A 49 549 117 HOH HOH . G 4 HOH A 50 550 120 HOH HOH . G 4 HOH A 51 551 121 HOH HOH . G 4 HOH A 52 552 123 HOH HOH . G 4 HOH A 53 553 131 HOH HOH . G 4 HOH A 54 554 134 HOH HOH . G 4 HOH A 55 555 135 HOH HOH . G 4 HOH A 56 556 137 HOH HOH . G 4 HOH A 57 557 140 HOH HOH . G 4 HOH A 58 558 148 HOH HOH . G 4 HOH A 59 559 150 HOH HOH . G 4 HOH A 60 560 151 HOH HOH . G 4 HOH A 61 561 155 HOH HOH . G 4 HOH A 62 562 157 HOH HOH . G 4 HOH A 63 563 158 HOH HOH . G 4 HOH A 64 564 159 HOH HOH . G 4 HOH A 65 565 161 HOH HOH . G 4 HOH A 66 566 163 HOH HOH . G 4 HOH A 67 567 164 HOH HOH . G 4 HOH A 68 568 166 HOH HOH . G 4 HOH A 69 569 167 HOH HOH . G 4 HOH A 70 570 170 HOH HOH . G 4 HOH A 71 571 171 HOH HOH . G 4 HOH A 72 572 172 HOH HOH . G 4 HOH A 73 573 174 HOH HOH . G 4 HOH A 74 574 176 HOH HOH . G 4 HOH A 75 575 180 HOH HOH . G 4 HOH A 76 576 181 HOH HOH . G 4 HOH A 77 577 184 HOH HOH . G 4 HOH A 78 578 186 HOH HOH . G 4 HOH A 79 579 191 HOH HOH . G 4 HOH A 80 580 192 HOH HOH . G 4 HOH A 81 581 193 HOH HOH . G 4 HOH A 82 582 195 HOH HOH . G 4 HOH A 83 583 196 HOH HOH . G 4 HOH A 84 584 199 HOH HOH . G 4 HOH A 85 585 201 HOH HOH . G 4 HOH A 86 586 203 HOH HOH . G 4 HOH A 87 587 206 HOH HOH . G 4 HOH A 88 588 207 HOH HOH . G 4 HOH A 89 589 209 HOH HOH . G 4 HOH A 90 590 210 HOH HOH . G 4 HOH A 91 591 212 HOH HOH . G 4 HOH A 92 592 214 HOH HOH . H 4 HOH B 1 501 6 HOH HOH . H 4 HOH B 2 502 9 HOH HOH . H 4 HOH B 3 503 10 HOH HOH . H 4 HOH B 4 504 11 HOH HOH . H 4 HOH B 5 505 12 HOH HOH . H 4 HOH B 6 506 13 HOH HOH . H 4 HOH B 7 507 14 HOH HOH . H 4 HOH B 8 508 16 HOH HOH . H 4 HOH B 9 509 22 HOH HOH . H 4 HOH B 10 510 23 HOH HOH . H 4 HOH B 11 511 26 HOH HOH . H 4 HOH B 12 512 32 HOH HOH . H 4 HOH B 13 513 35 HOH HOH . H 4 HOH B 14 514 37 HOH HOH . H 4 HOH B 15 515 39 HOH HOH . H 4 HOH B 16 516 40 HOH HOH . H 4 HOH B 17 517 42 HOH HOH . H 4 HOH B 18 518 43 HOH HOH . H 4 HOH B 19 519 48 HOH HOH . H 4 HOH B 20 520 52 HOH HOH . H 4 HOH B 21 521 56 HOH HOH . H 4 HOH B 22 522 58 HOH HOH . H 4 HOH B 23 523 59 HOH HOH . H 4 HOH B 24 524 60 HOH HOH . H 4 HOH B 25 525 61 HOH HOH . H 4 HOH B 26 526 66 HOH HOH . H 4 HOH B 27 527 69 HOH HOH . H 4 HOH B 28 528 70 HOH HOH . H 4 HOH B 29 529 71 HOH HOH . H 4 HOH B 30 530 72 HOH HOH . H 4 HOH B 31 531 76 HOH HOH . H 4 HOH B 32 532 78 HOH HOH . H 4 HOH B 33 533 81 HOH HOH . H 4 HOH B 34 534 82 HOH HOH . H 4 HOH B 35 535 83 HOH HOH . H 4 HOH B 36 536 84 HOH HOH . H 4 HOH B 37 537 86 HOH HOH . H 4 HOH B 38 538 88 HOH HOH . H 4 HOH B 39 539 89 HOH HOH . H 4 HOH B 40 540 90 HOH HOH . H 4 HOH B 41 541 92 HOH HOH . H 4 HOH B 42 542 94 HOH HOH . H 4 HOH B 43 543 95 HOH HOH . H 4 HOH B 44 544 98 HOH HOH . H 4 HOH B 45 545 99 HOH HOH . H 4 HOH B 46 546 102 HOH HOH . H 4 HOH B 47 547 103 HOH HOH . H 4 HOH B 48 548 104 HOH HOH . H 4 HOH B 49 549 105 HOH HOH . H 4 HOH B 50 550 106 HOH HOH . H 4 HOH B 51 551 109 HOH HOH . H 4 HOH B 52 552 111 HOH HOH . H 4 HOH B 53 553 113 HOH HOH . H 4 HOH B 54 554 114 HOH HOH . H 4 HOH B 55 555 118 HOH HOH . H 4 HOH B 56 556 119 HOH HOH . H 4 HOH B 57 557 122 HOH HOH . H 4 HOH B 58 558 124 HOH HOH . H 4 HOH B 59 559 125 HOH HOH . H 4 HOH B 60 560 126 HOH HOH . H 4 HOH B 61 561 127 HOH HOH . H 4 HOH B 62 562 128 HOH HOH . H 4 HOH B 63 563 129 HOH HOH . H 4 HOH B 64 564 130 HOH HOH . H 4 HOH B 65 565 133 HOH HOH . H 4 HOH B 66 566 136 HOH HOH . H 4 HOH B 67 567 139 HOH HOH . H 4 HOH B 68 568 141 HOH HOH . H 4 HOH B 69 569 142 HOH HOH . H 4 HOH B 70 570 143 HOH HOH . H 4 HOH B 71 571 145 HOH HOH . H 4 HOH B 72 572 146 HOH HOH . H 4 HOH B 73 573 147 HOH HOH . H 4 HOH B 74 574 149 HOH HOH . H 4 HOH B 75 575 152 HOH HOH . H 4 HOH B 76 576 154 HOH HOH . H 4 HOH B 77 577 156 HOH HOH . H 4 HOH B 78 578 160 HOH HOH . H 4 HOH B 79 579 165 HOH HOH . H 4 HOH B 80 580 168 HOH HOH . H 4 HOH B 81 581 169 HOH HOH . H 4 HOH B 82 582 173 HOH HOH . H 4 HOH B 83 583 175 HOH HOH . H 4 HOH B 84 584 177 HOH HOH . H 4 HOH B 85 585 178 HOH HOH . H 4 HOH B 86 586 183 HOH HOH . H 4 HOH B 87 587 187 HOH HOH . H 4 HOH B 88 588 194 HOH HOH . H 4 HOH B 89 589 197 HOH HOH . H 4 HOH B 90 590 198 HOH HOH . H 4 HOH B 91 591 200 HOH HOH . H 4 HOH B 92 592 204 HOH HOH . H 4 HOH B 93 593 208 HOH HOH . H 4 HOH B 94 594 211 HOH HOH . H 4 HOH B 95 595 213 HOH HOH . H 4 HOH B 96 596 63 HOH HOH . H 4 HOH B 97 597 189 HOH HOH . I 4 HOH C 1 101 1 HOH HOH . I 4 HOH C 2 102 3 HOH HOH . I 4 HOH C 3 103 4 HOH HOH . I 4 HOH C 4 104 51 HOH HOH . I 4 HOH C 5 105 116 HOH HOH . I 4 HOH C 6 106 138 HOH HOH . I 4 HOH C 7 107 144 HOH HOH . I 4 HOH C 8 108 205 HOH HOH . J 4 HOH D 1 101 17 HOH HOH . J 4 HOH D 2 102 38 HOH HOH . J 4 HOH D 3 103 47 HOH HOH . J 4 HOH D 4 104 68 HOH HOH . J 4 HOH D 5 105 80 HOH HOH . J 4 HOH D 6 106 85 HOH HOH . J 4 HOH D 7 107 101 HOH HOH . J 4 HOH D 8 108 107 HOH HOH . J 4 HOH D 9 109 132 HOH HOH . J 4 HOH D 10 110 162 HOH HOH . J 4 HOH D 11 111 179 HOH HOH . J 4 HOH D 12 112 182 HOH HOH . J 4 HOH D 13 113 185 HOH HOH . J 4 HOH D 14 114 190 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 3 -2.806 14.88 32.038 1 17.2 ? C1 GOL 401 B 1 HETATM 2 O O1 GOL . . . F 3 -3.559 16.072 32.089 1 20.05 ? O1 GOL 401 B 1 HETATM 3 C C2 GOL . . . F 3 -3.555 13.775 32.778 1 17.81 ? C2 GOL 401 B 1 HETATM 4 O O2 GOL . . . F 3 -4.754 13.447 32.098 1 16.04 ? O2 GOL 401 B 1 HETATM 5 C C3 GOL . . . F 3 -2.654 12.551 32.91 1 16.89 ? C3 GOL 401 B 1 HETATM 6 O O3 GOL . . . F 3 -3.35 11.506 33.557 1 21.03 ? O3 GOL 401 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #