data_4NMQ
#
_model_server_result.job_id            PWYqX-94bFuApLPiRcV0UQ 
_model_server_result.datetime_utc      '2024-11-08 15:45:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4nmq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":401}' 
#
_entry.id    4NMQ 
#
_exptl.entry_id    4NMQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4NMQ 
_cell.length_a            35.546 
_cell.length_b            47.462 
_cell.length_c            96.621 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4NMQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,G,I 1 1 
B,D,H,J 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C C TRP 5 C TRP 5 1_555 C N ALY 6 C ALY 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale2 C C ALY 6 C ALY 6 1_555 C N THR 7 C THR 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? 
covale ? covale3 D C TRP 5 D TRP 5 1_555 D N ALY 6 D ALY 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale4 D C ALY 6 D ALY 6 1_555 D N THR 7 D THR 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 157 n n 
C1 C2 GOL sing 158 n n 
C1 H11 GOL sing 159 n n 
C1 H12 GOL sing 160 n n 
O1 HO1 GOL sing 161 n n 
C2 O2 GOL sing 162 n n 
C2 C3 GOL sing 163 n n 
C2 H2 GOL sing 164 n n 
O2 HO2 GOL sing 165 n n 
C3 O3 GOL sing 166 n n 
C3 H31 GOL sing 167 n n 
C3 H32 GOL sing 168 n n 
O3 HO3 GOL sing 169 n n 
#
_atom_sites.entry_id                     4NMQ 
_atom_sites.fract_transf_matrix[1][1]    0.028133 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.021069 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01035 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 GOL A 1 401 1 GOL GOL . 
F 3 GOL A 1 402 3 GOL GOL . 
G 4 HOH A 1 501 1 HOH HOH . 
G 4 HOH A 2 502 3 HOH HOH . 
G 4 HOH A 3 503 5 HOH HOH . 
G 4 HOH A 4 504 6 HOH HOH . 
G 4 HOH A 5 505 12 HOH HOH . 
G 4 HOH A 6 506 15 HOH HOH . 
G 4 HOH A 7 507 17 HOH HOH . 
G 4 HOH A 8 508 20 HOH HOH . 
G 4 HOH A 9 509 21 HOH HOH . 
G 4 HOH A 10 510 22 HOH HOH . 
G 4 HOH A 11 511 23 HOH HOH . 
G 4 HOH A 12 512 24 HOH HOH . 
G 4 HOH A 13 513 25 HOH HOH . 
G 4 HOH A 14 514 30 HOH HOH . 
G 4 HOH A 15 515 31 HOH HOH . 
G 4 HOH A 16 516 33 HOH HOH . 
G 4 HOH A 17 517 34 HOH HOH . 
G 4 HOH A 18 518 35 HOH HOH . 
G 4 HOH A 19 519 37 HOH HOH . 
G 4 HOH A 20 520 39 HOH HOH . 
G 4 HOH A 21 521 40 HOH HOH . 
G 4 HOH A 22 522 42 HOH HOH . 
G 4 HOH A 23 523 43 HOH HOH . 
G 4 HOH A 24 524 45 HOH HOH . 
G 4 HOH A 25 525 47 HOH HOH . 
G 4 HOH A 26 526 49 HOH HOH . 
G 4 HOH A 27 527 53 HOH HOH . 
G 4 HOH A 28 528 58 HOH HOH . 
G 4 HOH A 29 529 60 HOH HOH . 
G 4 HOH A 30 530 61 HOH HOH . 
G 4 HOH A 31 531 63 HOH HOH . 
G 4 HOH A 32 532 65 HOH HOH . 
G 4 HOH A 33 533 66 HOH HOH . 
G 4 HOH A 34 534 67 HOH HOH . 
G 4 HOH A 35 535 69 HOH HOH . 
G 4 HOH A 36 536 71 HOH HOH . 
G 4 HOH A 37 537 73 HOH HOH . 
G 4 HOH A 38 538 74 HOH HOH . 
G 4 HOH A 39 539 75 HOH HOH . 
G 4 HOH A 40 540 76 HOH HOH . 
G 4 HOH A 41 541 77 HOH HOH . 
G 4 HOH A 42 542 79 HOH HOH . 
G 4 HOH A 43 543 84 HOH HOH . 
G 4 HOH A 44 544 85 HOH HOH . 
G 4 HOH A 45 545 86 HOH HOH . 
G 4 HOH A 46 546 87 HOH HOH . 
G 4 HOH A 47 547 93 HOH HOH . 
G 4 HOH A 48 548 94 HOH HOH . 
G 4 HOH A 49 549 95 HOH HOH . 
G 4 HOH A 50 550 96 HOH HOH . 
G 4 HOH A 51 551 97 HOH HOH . 
G 4 HOH A 52 552 98 HOH HOH . 
G 4 HOH A 53 553 99 HOH HOH . 
G 4 HOH A 54 554 100 HOH HOH . 
G 4 HOH A 55 555 104 HOH HOH . 
G 4 HOH A 56 556 107 HOH HOH . 
G 4 HOH A 57 557 111 HOH HOH . 
G 4 HOH A 58 558 113 HOH HOH . 
G 4 HOH A 59 559 114 HOH HOH . 
G 4 HOH A 60 560 115 HOH HOH . 
G 4 HOH A 61 561 118 HOH HOH . 
G 4 HOH A 62 562 119 HOH HOH . 
G 4 HOH A 63 563 121 HOH HOH . 
G 4 HOH A 64 564 122 HOH HOH . 
G 4 HOH A 65 565 123 HOH HOH . 
G 4 HOH A 66 566 126 HOH HOH . 
G 4 HOH A 67 567 131 HOH HOH . 
G 4 HOH A 68 568 132 HOH HOH . 
G 4 HOH A 69 569 133 HOH HOH . 
G 4 HOH A 70 570 135 HOH HOH . 
G 4 HOH A 71 571 136 HOH HOH . 
G 4 HOH A 72 572 137 HOH HOH . 
G 4 HOH A 73 573 138 HOH HOH . 
G 4 HOH A 74 574 141 HOH HOH . 
G 4 HOH A 75 575 142 HOH HOH . 
G 4 HOH A 76 576 143 HOH HOH . 
G 4 HOH A 77 577 146 HOH HOH . 
G 4 HOH A 78 578 147 HOH HOH . 
G 4 HOH A 79 579 579 HOH HOH . 
G 4 HOH A 80 580 149 HOH HOH . 
G 4 HOH A 81 581 152 HOH HOH . 
G 4 HOH A 82 582 153 HOH HOH . 
G 4 HOH A 83 583 156 HOH HOH . 
G 4 HOH A 84 584 162 HOH HOH . 
G 4 HOH A 85 585 167 HOH HOH . 
G 4 HOH A 86 586 168 HOH HOH . 
G 4 HOH A 87 587 170 HOH HOH . 
G 4 HOH A 88 588 172 HOH HOH . 
G 4 HOH A 89 589 173 HOH HOH . 
G 4 HOH A 90 590 175 HOH HOH . 
G 4 HOH A 91 591 178 HOH HOH . 
G 4 HOH A 92 592 179 HOH HOH . 
G 4 HOH A 93 593 180 HOH HOH . 
G 4 HOH A 94 594 181 HOH HOH . 
G 4 HOH A 95 595 595 HOH HOH . 
G 4 HOH A 96 596 194 HOH HOH . 
G 4 HOH A 97 597 199 HOH HOH . 
H 4 HOH B 1 401 7 HOH HOH . 
H 4 HOH B 2 402 8 HOH HOH . 
H 4 HOH B 3 403 9 HOH HOH . 
H 4 HOH B 4 404 10 HOH HOH . 
H 4 HOH B 5 405 11 HOH HOH . 
H 4 HOH B 6 406 13 HOH HOH . 
H 4 HOH B 7 407 14 HOH HOH . 
H 4 HOH B 8 408 16 HOH HOH . 
H 4 HOH B 9 409 18 HOH HOH . 
H 4 HOH B 10 410 26 HOH HOH . 
H 4 HOH B 11 411 27 HOH HOH . 
H 4 HOH B 12 412 28 HOH HOH . 
H 4 HOH B 13 413 29 HOH HOH . 
H 4 HOH B 14 414 32 HOH HOH . 
H 4 HOH B 15 415 36 HOH HOH . 
H 4 HOH B 16 416 41 HOH HOH . 
H 4 HOH B 17 417 44 HOH HOH . 
H 4 HOH B 18 418 46 HOH HOH . 
H 4 HOH B 19 419 48 HOH HOH . 
H 4 HOH B 20 420 50 HOH HOH . 
H 4 HOH B 21 421 52 HOH HOH . 
H 4 HOH B 22 422 54 HOH HOH . 
H 4 HOH B 23 423 55 HOH HOH . 
H 4 HOH B 24 424 56 HOH HOH . 
H 4 HOH B 25 425 57 HOH HOH . 
H 4 HOH B 26 426 59 HOH HOH . 
H 4 HOH B 27 427 62 HOH HOH . 
H 4 HOH B 28 428 64 HOH HOH . 
H 4 HOH B 29 429 70 HOH HOH . 
H 4 HOH B 30 430 78 HOH HOH . 
H 4 HOH B 31 431 80 HOH HOH . 
H 4 HOH B 32 432 81 HOH HOH . 
H 4 HOH B 33 433 83 HOH HOH . 
H 4 HOH B 34 434 88 HOH HOH . 
H 4 HOH B 35 435 89 HOH HOH . 
H 4 HOH B 36 436 101 HOH HOH . 
H 4 HOH B 37 437 103 HOH HOH . 
H 4 HOH B 38 438 105 HOH HOH . 
H 4 HOH B 39 439 106 HOH HOH . 
H 4 HOH B 40 440 109 HOH HOH . 
H 4 HOH B 41 441 110 HOH HOH . 
H 4 HOH B 42 442 112 HOH HOH . 
H 4 HOH B 43 443 116 HOH HOH . 
H 4 HOH B 44 444 117 HOH HOH . 
H 4 HOH B 45 445 120 HOH HOH . 
H 4 HOH B 46 446 125 HOH HOH . 
H 4 HOH B 47 447 127 HOH HOH . 
H 4 HOH B 48 448 128 HOH HOH . 
H 4 HOH B 49 449 129 HOH HOH . 
H 4 HOH B 50 450 130 HOH HOH . 
H 4 HOH B 51 451 140 HOH HOH . 
H 4 HOH B 52 452 144 HOH HOH . 
H 4 HOH B 53 453 150 HOH HOH . 
H 4 HOH B 54 454 151 HOH HOH . 
H 4 HOH B 55 455 154 HOH HOH . 
H 4 HOH B 56 456 155 HOH HOH . 
H 4 HOH B 57 457 159 HOH HOH . 
H 4 HOH B 58 458 161 HOH HOH . 
H 4 HOH B 59 459 163 HOH HOH . 
H 4 HOH B 60 460 164 HOH HOH . 
H 4 HOH B 61 461 165 HOH HOH . 
H 4 HOH B 62 462 169 HOH HOH . 
H 4 HOH B 63 463 174 HOH HOH . 
H 4 HOH B 64 464 176 HOH HOH . 
H 4 HOH B 65 465 177 HOH HOH . 
H 4 HOH B 66 466 184 HOH HOH . 
H 4 HOH B 67 467 185 HOH HOH . 
H 4 HOH B 68 468 186 HOH HOH . 
H 4 HOH B 69 469 187 HOH HOH . 
H 4 HOH B 70 470 188 HOH HOH . 
H 4 HOH B 71 471 189 HOH HOH . 
H 4 HOH B 72 472 191 HOH HOH . 
H 4 HOH B 73 473 192 HOH HOH . 
H 4 HOH B 74 474 193 HOH HOH . 
H 4 HOH B 75 475 195 HOH HOH . 
H 4 HOH B 76 476 196 HOH HOH . 
H 4 HOH B 77 477 197 HOH HOH . 
H 4 HOH B 78 478 198 HOH HOH . 
H 4 HOH B 79 479 2 HOH HOH . 
I 4 HOH C 1 101 92 HOH HOH . 
I 4 HOH C 2 102 4 HOH HOH . 
I 4 HOH C 3 103 38 HOH HOH . 
I 4 HOH C 4 104 51 HOH HOH . 
I 4 HOH C 5 105 68 HOH HOH . 
I 4 HOH C 6 106 102 HOH HOH . 
I 4 HOH C 7 107 108 HOH HOH . 
I 4 HOH C 8 108 134 HOH HOH . 
I 4 HOH C 9 109 139 HOH HOH . 
I 4 HOH C 10 110 157 HOH HOH . 
I 4 HOH C 11 111 158 HOH HOH . 
I 4 HOH C 12 112 160 HOH HOH . 
I 4 HOH C 13 113 166 HOH HOH . 
J 4 HOH D 1 101 19 HOH HOH . 
J 4 HOH D 2 102 72 HOH HOH . 
J 4 HOH D 3 103 82 HOH HOH . 
J 4 HOH D 4 104 90 HOH HOH . 
J 4 HOH D 5 105 91 HOH HOH . 
J 4 HOH D 6 106 124 HOH HOH . 
J 4 HOH D 7 107 183 HOH HOH . 
J 4 HOH D 8 108 190 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 3 8.009 36.417 26.785 1 30.27 ? C1 GOL 401 A 1 
HETATM 2 O O1 GOL . . . E 3 7.738 35.104 26.356 1 34.01 ? O1 GOL 401 A 1 
HETATM 3 C C2 GOL . . . E 3 9.394 36.852 26.316 1 20.13 ? C2 GOL 401 A 1 
HETATM 4 O O2 GOL . . . E 3 9.233 37.918 25.399 1 24.79 ? O2 GOL 401 A 1 
HETATM 5 C C3 GOL . . . E 3 10.163 37.347 27.534 1 18.11 ? C3 GOL 401 A 1 
HETATM 6 O O3 GOL . . . E 3 9.413 38.348 28.207 1 14.63 ? O3 GOL 401 A 1 
#
_model_server_stats.io_time_ms              66 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    34 
_model_server_stats.query_time_ms           322 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#