data_4NMR # _model_server_result.job_id L2NCEHccSOz8CT99zjEXsA _model_server_result.datetime_utc '2024-11-08 15:10:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4nmr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 4NMR # _exptl.entry_id 4NMR _exptl.method 'X-RAY DIFFRACTION' # _entity.details 'peptide synthesis' _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4NMR _cell.length_a 36.137 _cell.length_b 47.514 _cell.length_c 100.536 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4NMR _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,F,H 1 1 B,D,E,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C ARG 4 C ARG 4 1_555 C N ALY 5 C ALY 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 sing covale ? covale2 C C ALY 5 C ALY 5 1_555 C N PRO 6 C PRO 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 sing covale ? covale3 D C ALY 5 D ALY 5 1_555 D N PRO 6 D PRO 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 sing # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 157 n n C1 C2 GOL sing 158 n n C1 H11 GOL sing 159 n n C1 H12 GOL sing 160 n n O1 HO1 GOL sing 161 n n C2 O2 GOL sing 162 n n C2 C3 GOL sing 163 n n C2 H2 GOL sing 164 n n O2 HO2 GOL sing 165 n n C3 O3 GOL sing 166 n n C3 H31 GOL sing 167 n n C3 H32 GOL sing 168 n n O3 HO3 GOL sing 169 n n # _atom_sites.entry_id 4NMR _atom_sites.fract_transf_matrix[1][1] 0.027673 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021046 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009947 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GOL B 1 401 1 GOL GOL . F 4 HOH A 1 401 1 HOH HOH . F 4 HOH A 2 402 2 HOH HOH . F 4 HOH A 3 403 5 HOH HOH . F 4 HOH A 4 404 7 HOH HOH . F 4 HOH A 5 405 8 HOH HOH . F 4 HOH A 6 406 9 HOH HOH . F 4 HOH A 7 407 10 HOH HOH . F 4 HOH A 8 408 11 HOH HOH . F 4 HOH A 9 409 13 HOH HOH . F 4 HOH A 10 410 15 HOH HOH . F 4 HOH A 11 411 18 HOH HOH . F 4 HOH A 12 412 21 HOH HOH . F 4 HOH A 13 413 24 HOH HOH . F 4 HOH A 14 414 25 HOH HOH . F 4 HOH A 15 415 31 HOH HOH . F 4 HOH A 16 416 33 HOH HOH . F 4 HOH A 17 417 34 HOH HOH . F 4 HOH A 18 418 37 HOH HOH . F 4 HOH A 19 419 39 HOH HOH . F 4 HOH A 20 420 40 HOH HOH . F 4 HOH A 21 421 43 HOH HOH . F 4 HOH A 22 422 44 HOH HOH . F 4 HOH A 23 423 45 HOH HOH . F 4 HOH A 24 424 46 HOH HOH . F 4 HOH A 25 425 48 HOH HOH . F 4 HOH A 26 426 49 HOH HOH . F 4 HOH A 27 427 50 HOH HOH . F 4 HOH A 28 428 51 HOH HOH . F 4 HOH A 29 429 52 HOH HOH . F 4 HOH A 30 430 53 HOH HOH . F 4 HOH A 31 431 56 HOH HOH . F 4 HOH A 32 432 62 HOH HOH . F 4 HOH A 33 433 67 HOH HOH . F 4 HOH A 34 434 68 HOH HOH . F 4 HOH A 35 435 71 HOH HOH . F 4 HOH A 36 436 75 HOH HOH . F 4 HOH A 37 437 78 HOH HOH . F 4 HOH A 38 438 79 HOH HOH . F 4 HOH A 39 439 80 HOH HOH . F 4 HOH A 40 440 82 HOH HOH . F 4 HOH A 41 441 84 HOH HOH . F 4 HOH A 42 442 86 HOH HOH . F 4 HOH A 43 443 90 HOH HOH . F 4 HOH A 44 444 91 HOH HOH . F 4 HOH A 45 445 93 HOH HOH . F 4 HOH A 46 446 96 HOH HOH . F 4 HOH A 47 447 100 HOH HOH . F 4 HOH A 48 448 102 HOH HOH . F 4 HOH A 49 449 105 HOH HOH . F 4 HOH A 50 450 107 HOH HOH . F 4 HOH A 51 451 110 HOH HOH . F 4 HOH A 52 452 111 HOH HOH . F 4 HOH A 53 453 112 HOH HOH . F 4 HOH A 54 454 113 HOH HOH . F 4 HOH A 55 455 114 HOH HOH . F 4 HOH A 56 456 115 HOH HOH . F 4 HOH A 57 457 116 HOH HOH . F 4 HOH A 58 458 118 HOH HOH . F 4 HOH A 59 459 119 HOH HOH . F 4 HOH A 60 460 120 HOH HOH . F 4 HOH A 61 461 124 HOH HOH . F 4 HOH A 62 462 126 HOH HOH . F 4 HOH A 63 463 128 HOH HOH . F 4 HOH A 64 464 129 HOH HOH . F 4 HOH A 65 465 132 HOH HOH . F 4 HOH A 66 466 133 HOH HOH . F 4 HOH A 67 467 135 HOH HOH . F 4 HOH A 68 468 136 HOH HOH . F 4 HOH A 69 469 137 HOH HOH . F 4 HOH A 70 470 138 HOH HOH . F 4 HOH A 71 471 140 HOH HOH . F 4 HOH A 72 472 143 HOH HOH . F 4 HOH A 73 473 145 HOH HOH . F 4 HOH A 74 474 148 HOH HOH . F 4 HOH A 75 475 150 HOH HOH . F 4 HOH A 76 476 151 HOH HOH . F 4 HOH A 77 477 156 HOH HOH . F 4 HOH A 78 478 157 HOH HOH . F 4 HOH A 79 479 160 HOH HOH . F 4 HOH A 80 480 163 HOH HOH . F 4 HOH A 81 481 164 HOH HOH . F 4 HOH A 82 482 168 HOH HOH . F 4 HOH A 83 483 170 HOH HOH . F 4 HOH A 84 484 171 HOH HOH . F 4 HOH A 85 485 173 HOH HOH . F 4 HOH A 86 486 174 HOH HOH . F 4 HOH A 87 487 175 HOH HOH . F 4 HOH A 88 488 177 HOH HOH . F 4 HOH A 89 489 178 HOH HOH . F 4 HOH A 90 490 179 HOH HOH . F 4 HOH A 91 491 183 HOH HOH . F 4 HOH A 92 492 184 HOH HOH . F 4 HOH A 93 493 187 HOH HOH . F 4 HOH A 94 494 189 HOH HOH . F 4 HOH A 95 495 190 HOH HOH . F 4 HOH A 96 496 197 HOH HOH . F 4 HOH A 97 497 198 HOH HOH . F 4 HOH A 98 498 200 HOH HOH . F 4 HOH A 99 499 201 HOH HOH . F 4 HOH A 100 500 203 HOH HOH . F 4 HOH A 101 501 206 HOH HOH . F 4 HOH A 102 502 207 HOH HOH . F 4 HOH A 103 503 208 HOH HOH . F 4 HOH A 104 504 209 HOH HOH . F 4 HOH A 105 505 212 HOH HOH . F 4 HOH A 106 506 214 HOH HOH . F 4 HOH A 107 507 215 HOH HOH . F 4 HOH A 108 508 221 HOH HOH . F 4 HOH A 109 509 223 HOH HOH . F 4 HOH A 110 510 225 HOH HOH . F 4 HOH A 111 511 227 HOH HOH . F 4 HOH A 112 512 228 HOH HOH . F 4 HOH A 113 513 230 HOH HOH . F 4 HOH A 114 514 232 HOH HOH . F 4 HOH A 115 515 235 HOH HOH . F 4 HOH A 116 516 236 HOH HOH . F 4 HOH A 117 517 241 HOH HOH . F 4 HOH A 118 518 242 HOH HOH . F 4 HOH A 119 519 246 HOH HOH . F 4 HOH A 120 520 248 HOH HOH . F 4 HOH A 121 521 253 HOH HOH . F 4 HOH A 122 522 257 HOH HOH . F 4 HOH A 123 523 259 HOH HOH . F 4 HOH A 124 524 262 HOH HOH . F 4 HOH A 125 525 264 HOH HOH . F 4 HOH A 126 526 265 HOH HOH . G 4 HOH B 1 501 3 HOH HOH . G 4 HOH B 2 502 4 HOH HOH . G 4 HOH B 3 503 6 HOH HOH . G 4 HOH B 4 504 12 HOH HOH . G 4 HOH B 5 505 14 HOH HOH . G 4 HOH B 6 506 16 HOH HOH . G 4 HOH B 7 507 17 HOH HOH . G 4 HOH B 8 508 19 HOH HOH . G 4 HOH B 9 509 20 HOH HOH . G 4 HOH B 10 510 22 HOH HOH . G 4 HOH B 11 511 26 HOH HOH . G 4 HOH B 12 512 27 HOH HOH . G 4 HOH B 13 513 32 HOH HOH . G 4 HOH B 14 514 35 HOH HOH . G 4 HOH B 15 515 36 HOH HOH . G 4 HOH B 16 516 38 HOH HOH . G 4 HOH B 17 517 41 HOH HOH . G 4 HOH B 18 518 42 HOH HOH . G 4 HOH B 19 519 47 HOH HOH . G 4 HOH B 20 520 54 HOH HOH . G 4 HOH B 21 521 55 HOH HOH . G 4 HOH B 22 522 57 HOH HOH . G 4 HOH B 23 523 58 HOH HOH . G 4 HOH B 24 524 59 HOH HOH . G 4 HOH B 25 525 61 HOH HOH . G 4 HOH B 26 526 63 HOH HOH . G 4 HOH B 27 527 64 HOH HOH . G 4 HOH B 28 528 65 HOH HOH . G 4 HOH B 29 529 66 HOH HOH . G 4 HOH B 30 530 69 HOH HOH . G 4 HOH B 31 531 70 HOH HOH . G 4 HOH B 32 532 72 HOH HOH . G 4 HOH B 33 533 73 HOH HOH . G 4 HOH B 34 534 74 HOH HOH . G 4 HOH B 35 535 77 HOH HOH . G 4 HOH B 36 536 81 HOH HOH . G 4 HOH B 37 537 83 HOH HOH . G 4 HOH B 38 538 85 HOH HOH . G 4 HOH B 39 539 87 HOH HOH . G 4 HOH B 40 540 88 HOH HOH . G 4 HOH B 41 541 89 HOH HOH . G 4 HOH B 42 542 92 HOH HOH . G 4 HOH B 43 543 94 HOH HOH . G 4 HOH B 44 544 95 HOH HOH . G 4 HOH B 45 545 98 HOH HOH . G 4 HOH B 46 546 99 HOH HOH . G 4 HOH B 47 547 101 HOH HOH . G 4 HOH B 48 548 103 HOH HOH . G 4 HOH B 49 549 104 HOH HOH . G 4 HOH B 50 550 106 HOH HOH . G 4 HOH B 51 551 108 HOH HOH . G 4 HOH B 52 552 109 HOH HOH . G 4 HOH B 53 553 117 HOH HOH . G 4 HOH B 54 554 121 HOH HOH . G 4 HOH B 55 555 122 HOH HOH . G 4 HOH B 56 556 123 HOH HOH . G 4 HOH B 57 557 125 HOH HOH . G 4 HOH B 58 558 127 HOH HOH . G 4 HOH B 59 559 130 HOH HOH . G 4 HOH B 60 560 134 HOH HOH . G 4 HOH B 61 561 139 HOH HOH . G 4 HOH B 62 562 141 HOH HOH . G 4 HOH B 63 563 142 HOH HOH . G 4 HOH B 64 564 144 HOH HOH . G 4 HOH B 65 565 146 HOH HOH . G 4 HOH B 66 566 147 HOH HOH . G 4 HOH B 67 567 149 HOH HOH . G 4 HOH B 68 568 153 HOH HOH . G 4 HOH B 69 569 154 HOH HOH . G 4 HOH B 70 570 158 HOH HOH . G 4 HOH B 71 571 159 HOH HOH . G 4 HOH B 72 572 162 HOH HOH . G 4 HOH B 73 573 165 HOH HOH . G 4 HOH B 74 574 166 HOH HOH . G 4 HOH B 75 575 167 HOH HOH . G 4 HOH B 76 576 169 HOH HOH . G 4 HOH B 77 577 172 HOH HOH . G 4 HOH B 78 578 176 HOH HOH . G 4 HOH B 79 579 180 HOH HOH . G 4 HOH B 80 580 181 HOH HOH . G 4 HOH B 81 581 185 HOH HOH . G 4 HOH B 82 582 186 HOH HOH . G 4 HOH B 83 583 188 HOH HOH . G 4 HOH B 84 584 191 HOH HOH . G 4 HOH B 85 585 192 HOH HOH . G 4 HOH B 86 586 193 HOH HOH . G 4 HOH B 87 587 194 HOH HOH . G 4 HOH B 88 588 195 HOH HOH . G 4 HOH B 89 589 196 HOH HOH . G 4 HOH B 90 590 199 HOH HOH . G 4 HOH B 91 591 202 HOH HOH . G 4 HOH B 92 592 204 HOH HOH . G 4 HOH B 93 593 205 HOH HOH . G 4 HOH B 94 594 210 HOH HOH . G 4 HOH B 95 595 211 HOH HOH . G 4 HOH B 96 596 213 HOH HOH . G 4 HOH B 97 597 216 HOH HOH . G 4 HOH B 98 598 217 HOH HOH . G 4 HOH B 99 599 218 HOH HOH . G 4 HOH B 100 600 219 HOH HOH . G 4 HOH B 101 601 220 HOH HOH . G 4 HOH B 102 602 224 HOH HOH . G 4 HOH B 103 603 226 HOH HOH . G 4 HOH B 104 604 229 HOH HOH . G 4 HOH B 105 605 231 HOH HOH . G 4 HOH B 106 606 233 HOH HOH . G 4 HOH B 107 607 234 HOH HOH . G 4 HOH B 108 608 237 HOH HOH . G 4 HOH B 109 609 238 HOH HOH . G 4 HOH B 110 610 239 HOH HOH . G 4 HOH B 111 611 240 HOH HOH . G 4 HOH B 112 612 243 HOH HOH . G 4 HOH B 113 613 244 HOH HOH . G 4 HOH B 114 614 245 HOH HOH . G 4 HOH B 115 615 247 HOH HOH . G 4 HOH B 116 616 249 HOH HOH . G 4 HOH B 117 617 250 HOH HOH . G 4 HOH B 118 618 251 HOH HOH . G 4 HOH B 119 619 252 HOH HOH . G 4 HOH B 120 620 254 HOH HOH . G 4 HOH B 121 621 255 HOH HOH . G 4 HOH B 122 622 256 HOH HOH . G 4 HOH B 123 623 258 HOH HOH . G 4 HOH B 124 624 260 HOH HOH . G 4 HOH B 125 625 261 HOH HOH . G 4 HOH B 126 626 263 HOH HOH . H 4 HOH C 1 101 23 HOH HOH . H 4 HOH C 2 102 28 HOH HOH . H 4 HOH C 3 103 30 HOH HOH . H 4 HOH C 4 104 76 HOH HOH . H 4 HOH C 5 105 131 HOH HOH . H 4 HOH C 6 106 152 HOH HOH . H 4 HOH C 7 107 182 HOH HOH . H 4 HOH C 8 108 222 HOH HOH . I 4 HOH D 1 101 29 HOH HOH . I 4 HOH D 2 102 60 HOH HOH . I 4 HOH D 3 103 97 HOH HOH . I 4 HOH D 4 104 155 HOH HOH . I 4 HOH D 5 105 161 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 3 -2.94 21.78 29.328 1 32.33 ? C1 GOL 401 B 1 HETATM 2 O O1 GOL . . . E 3 -4.048 22.632 29.516 1 39.51 ? O1 GOL 401 B 1 HETATM 3 C C2 GOL . . . E 3 -2.641 21.625 27.837 1 25.95 ? C2 GOL 401 B 1 HETATM 4 O O2 GOL . . . E 3 -2.702 22.879 27.188 1 22.38 ? O2 GOL 401 B 1 HETATM 5 C C3 GOL . . . E 3 -1.237 21.06 27.668 1 23.92 ? C3 GOL 401 B 1 HETATM 6 O O3 GOL . . . E 3 -1.175 19.778 28.256 1 21.41 ? O3 GOL 401 B 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #