data_4NMS
#
_model_server_result.job_id            p3jFu_GeqIXBogwAKoxeFw 
_model_server_result.datetime_utc      '2024-11-24 07:03:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4nms 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":402}' 
#
_entry.id    4NMS 
#
_exptl.entry_id    4NMS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     'peptide synthesis' 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4NMS 
_cell.length_a            36.275 
_cell.length_b            47.736 
_cell.length_c            97.776 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4NMS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,G,I 1 1 
B,D,H,J 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C C SER 8 C SER 8 1_555 C N 2KK 9 C 2KK 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 sing 
covale ? covale2 C C 2KK 9 C 2KK 9 1_555 C N ILE 10 C ILE 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 sing 
covale ? covale3 D C SER 8 D SER 8 1_555 D N 2KK 9 D 2KK 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 sing 
covale ? covale4 D C 2KK 9 D 2KK 9 1_555 D N ILE 10 D ILE 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 sing 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 165 n n 
C1 C2 GOL sing 166 n n 
C1 H11 GOL sing 167 n n 
C1 H12 GOL sing 168 n n 
O1 HO1 GOL sing 169 n n 
C2 O2 GOL sing 170 n n 
C2 C3 GOL sing 171 n n 
C2 H2 GOL sing 172 n n 
O2 HO2 GOL sing 173 n n 
C3 O3 GOL sing 174 n n 
C3 H31 GOL sing 175 n n 
C3 H32 GOL sing 176 n n 
O3 HO3 GOL sing 177 n n 
#
_atom_sites.entry_id                     4NMS 
_atom_sites.fract_transf_matrix[1][1]    0.027567 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020949 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010227 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 GOL A 1 401 1 GOL GOL . 
F 3 GOL A 1 402 3 GOL GOL . 
G 4 HOH A 1 501 4 HOH HOH . 
G 4 HOH A 2 502 5 HOH HOH . 
G 4 HOH A 3 503 7 HOH HOH . 
G 4 HOH A 4 504 9 HOH HOH . 
G 4 HOH A 5 505 11 HOH HOH . 
G 4 HOH A 6 506 12 HOH HOH . 
G 4 HOH A 7 507 13 HOH HOH . 
G 4 HOH A 8 508 14 HOH HOH . 
G 4 HOH A 9 509 16 HOH HOH . 
G 4 HOH A 10 510 21 HOH HOH . 
G 4 HOH A 11 511 23 HOH HOH . 
G 4 HOH A 12 512 25 HOH HOH . 
G 4 HOH A 13 513 26 HOH HOH . 
G 4 HOH A 14 514 29 HOH HOH . 
G 4 HOH A 15 515 30 HOH HOH . 
G 4 HOH A 16 516 32 HOH HOH . 
G 4 HOH A 17 517 34 HOH HOH . 
G 4 HOH A 18 518 36 HOH HOH . 
G 4 HOH A 19 519 42 HOH HOH . 
G 4 HOH A 20 520 46 HOH HOH . 
G 4 HOH A 21 521 47 HOH HOH . 
G 4 HOH A 22 522 48 HOH HOH . 
G 4 HOH A 23 523 51 HOH HOH . 
G 4 HOH A 24 524 54 HOH HOH . 
G 4 HOH A 25 525 55 HOH HOH . 
G 4 HOH A 26 526 56 HOH HOH . 
G 4 HOH A 27 527 58 HOH HOH . 
G 4 HOH A 28 528 59 HOH HOH . 
G 4 HOH A 29 529 60 HOH HOH . 
G 4 HOH A 30 530 61 HOH HOH . 
G 4 HOH A 31 531 62 HOH HOH . 
G 4 HOH A 32 532 70 HOH HOH . 
G 4 HOH A 33 533 71 HOH HOH . 
G 4 HOH A 34 534 74 HOH HOH . 
G 4 HOH A 35 535 77 HOH HOH . 
G 4 HOH A 36 536 79 HOH HOH . 
G 4 HOH A 37 537 80 HOH HOH . 
G 4 HOH A 38 538 84 HOH HOH . 
G 4 HOH A 39 539 86 HOH HOH . 
G 4 HOH A 40 540 90 HOH HOH . 
G 4 HOH A 41 541 92 HOH HOH . 
G 4 HOH A 42 542 99 HOH HOH . 
G 4 HOH A 43 543 101 HOH HOH . 
G 4 HOH A 44 544 102 HOH HOH . 
G 4 HOH A 45 545 103 HOH HOH . 
G 4 HOH A 46 546 104 HOH HOH . 
G 4 HOH A 47 547 105 HOH HOH . 
G 4 HOH A 48 548 106 HOH HOH . 
G 4 HOH A 49 549 111 HOH HOH . 
G 4 HOH A 50 550 114 HOH HOH . 
G 4 HOH A 51 551 117 HOH HOH . 
G 4 HOH A 52 552 118 HOH HOH . 
G 4 HOH A 53 553 121 HOH HOH . 
G 4 HOH A 54 554 125 HOH HOH . 
G 4 HOH A 55 555 131 HOH HOH . 
G 4 HOH A 56 556 132 HOH HOH . 
G 4 HOH A 57 557 133 HOH HOH . 
G 4 HOH A 58 558 136 HOH HOH . 
G 4 HOH A 59 559 138 HOH HOH . 
G 4 HOH A 60 560 139 HOH HOH . 
G 4 HOH A 61 561 142 HOH HOH . 
G 4 HOH A 62 562 144 HOH HOH . 
G 4 HOH A 63 563 145 HOH HOH . 
G 4 HOH A 64 564 148 HOH HOH . 
G 4 HOH A 65 565 149 HOH HOH . 
G 4 HOH A 66 566 152 HOH HOH . 
G 4 HOH A 67 567 153 HOH HOH . 
G 4 HOH A 68 568 155 HOH HOH . 
G 4 HOH A 69 569 156 HOH HOH . 
G 4 HOH A 70 570 157 HOH HOH . 
G 4 HOH A 71 571 162 HOH HOH . 
G 4 HOH A 72 572 165 HOH HOH . 
G 4 HOH A 73 573 166 HOH HOH . 
G 4 HOH A 74 574 168 HOH HOH . 
G 4 HOH A 75 575 170 HOH HOH . 
G 4 HOH A 76 576 172 HOH HOH . 
G 4 HOH A 77 577 173 HOH HOH . 
G 4 HOH A 78 578 174 HOH HOH . 
G 4 HOH A 79 579 175 HOH HOH . 
G 4 HOH A 80 580 176 HOH HOH . 
G 4 HOH A 81 581 177 HOH HOH . 
G 4 HOH A 82 582 178 HOH HOH . 
G 4 HOH A 83 583 179 HOH HOH . 
G 4 HOH A 84 584 180 HOH HOH . 
H 4 HOH B 1 401 3 HOH HOH . 
H 4 HOH B 2 402 8 HOH HOH . 
H 4 HOH B 3 403 10 HOH HOH . 
H 4 HOH B 4 404 15 HOH HOH . 
H 4 HOH B 5 405 17 HOH HOH . 
H 4 HOH B 6 406 18 HOH HOH . 
H 4 HOH B 7 407 20 HOH HOH . 
H 4 HOH B 8 408 22 HOH HOH . 
H 4 HOH B 9 409 27 HOH HOH . 
H 4 HOH B 10 410 28 HOH HOH . 
H 4 HOH B 11 411 31 HOH HOH . 
H 4 HOH B 12 412 33 HOH HOH . 
H 4 HOH B 13 413 35 HOH HOH . 
H 4 HOH B 14 414 37 HOH HOH . 
H 4 HOH B 15 415 38 HOH HOH . 
H 4 HOH B 16 416 39 HOH HOH . 
H 4 HOH B 17 417 40 HOH HOH . 
H 4 HOH B 18 418 41 HOH HOH . 
H 4 HOH B 19 419 43 HOH HOH . 
H 4 HOH B 20 420 44 HOH HOH . 
H 4 HOH B 21 421 49 HOH HOH . 
H 4 HOH B 22 422 50 HOH HOH . 
H 4 HOH B 23 423 52 HOH HOH . 
H 4 HOH B 24 424 57 HOH HOH . 
H 4 HOH B 25 425 64 HOH HOH . 
H 4 HOH B 26 426 65 HOH HOH . 
H 4 HOH B 27 427 66 HOH HOH . 
H 4 HOH B 28 428 67 HOH HOH . 
H 4 HOH B 29 429 68 HOH HOH . 
H 4 HOH B 30 430 69 HOH HOH . 
H 4 HOH B 31 431 72 HOH HOH . 
H 4 HOH B 32 432 73 HOH HOH . 
H 4 HOH B 33 433 75 HOH HOH . 
H 4 HOH B 34 434 82 HOH HOH . 
H 4 HOH B 35 435 85 HOH HOH . 
H 4 HOH B 36 436 87 HOH HOH . 
H 4 HOH B 37 437 88 HOH HOH . 
H 4 HOH B 38 438 91 HOH HOH . 
H 4 HOH B 39 439 93 HOH HOH . 
H 4 HOH B 40 440 94 HOH HOH . 
H 4 HOH B 41 441 95 HOH HOH . 
H 4 HOH B 42 442 96 HOH HOH . 
H 4 HOH B 43 443 108 HOH HOH . 
H 4 HOH B 44 444 109 HOH HOH . 
H 4 HOH B 45 445 110 HOH HOH . 
H 4 HOH B 46 446 112 HOH HOH . 
H 4 HOH B 47 447 113 HOH HOH . 
H 4 HOH B 48 448 115 HOH HOH . 
H 4 HOH B 49 449 116 HOH HOH . 
H 4 HOH B 50 450 119 HOH HOH . 
H 4 HOH B 51 451 120 HOH HOH . 
H 4 HOH B 52 452 123 HOH HOH . 
H 4 HOH B 53 453 124 HOH HOH . 
H 4 HOH B 54 454 128 HOH HOH . 
H 4 HOH B 55 455 134 HOH HOH . 
H 4 HOH B 56 456 135 HOH HOH . 
H 4 HOH B 57 457 137 HOH HOH . 
H 4 HOH B 58 458 140 HOH HOH . 
H 4 HOH B 59 459 141 HOH HOH . 
H 4 HOH B 60 460 143 HOH HOH . 
H 4 HOH B 61 461 146 HOH HOH . 
H 4 HOH B 62 462 147 HOH HOH . 
H 4 HOH B 63 463 150 HOH HOH . 
H 4 HOH B 64 464 151 HOH HOH . 
H 4 HOH B 65 465 154 HOH HOH . 
H 4 HOH B 66 466 158 HOH HOH . 
H 4 HOH B 67 467 159 HOH HOH . 
H 4 HOH B 68 468 163 HOH HOH . 
H 4 HOH B 69 469 164 HOH HOH . 
H 4 HOH B 70 470 167 HOH HOH . 
H 4 HOH B 71 471 169 HOH HOH . 
H 4 HOH B 72 472 171 HOH HOH . 
I 4 HOH C 1 101 1 HOH HOH . 
I 4 HOH C 2 102 2 HOH HOH . 
I 4 HOH C 3 103 6 HOH HOH . 
I 4 HOH C 4 104 24 HOH HOH . 
I 4 HOH C 5 105 53 HOH HOH . 
I 4 HOH C 6 106 63 HOH HOH . 
I 4 HOH C 7 107 78 HOH HOH . 
I 4 HOH C 8 108 81 HOH HOH . 
I 4 HOH C 9 109 83 HOH HOH . 
I 4 HOH C 10 110 89 HOH HOH . 
I 4 HOH C 11 111 126 HOH HOH . 
I 4 HOH C 12 112 127 HOH HOH . 
I 4 HOH C 13 113 129 HOH HOH . 
I 4 HOH C 14 114 130 HOH HOH . 
I 4 HOH C 15 115 181 HOH HOH . 
J 4 HOH D 1 101 19 HOH HOH . 
J 4 HOH D 2 102 45 HOH HOH . 
J 4 HOH D 3 103 76 HOH HOH . 
J 4 HOH D 4 104 97 HOH HOH . 
J 4 HOH D 5 105 98 HOH HOH . 
J 4 HOH D 6 106 100 HOH HOH . 
J 4 HOH D 7 107 107 HOH HOH . 
J 4 HOH D 8 108 122 HOH HOH . 
J 4 HOH D 9 109 160 HOH HOH . 
J 4 HOH D 10 110 161 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . F 3 2.657 38.408 16.303 1 23.33 ? C1 GOL 402 A 1 
HETATM 2 O O1 GOL . . . F 3 3.585 39.386 16.718 1 24.9 ? O1 GOL 402 A 1 
HETATM 3 C C2 GOL . . . F 3 3.254 37.012 16.437 1 28.26 ? C2 GOL 402 A 1 
HETATM 4 O O2 GOL . . . F 3 4.666 37.099 16.53 1 23.56 ? O2 GOL 402 A 1 
HETATM 5 C C3 GOL . . . F 3 2.836 36.166 15.239 1 28.64 ? C3 GOL 402 A 1 
HETATM 6 O O3 GOL . . . F 3 3.145 34.801 15.436 1 27.79 ? O3 GOL 402 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           334 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#