data_4NMT
#
_model_server_result.job_id            yjZDWmiPwRGtHq8fje2VPw 
_model_server_result.datetime_utc      '2024-11-16 18:28:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4nmt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":401}' 
#
_entry.id    4NMT 
#
_exptl.entry_id    4NMT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4NMT 
_cell.length_a            35.986 
_cell.length_b            47.944 
_cell.length_c            97.454 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4NMT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,G,I 1 1 
B,D,F,H,J 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C C SER 8 C SER 8 1_555 C N FAK 9 C FAK 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 sing 
covale ? covale2 C C FAK 9 C FAK 9 1_555 C N ILE 10 C ILE 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 sing 
covale ? covale3 D C SER 8 D SER 8 1_555 D N FAK 9 D FAK 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? 
covale ? covale4 D C FAK 9 D FAK 9 1_555 D N ILE 10 D ILE 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 157 n n 
C1 C2 GOL sing 158 n n 
C1 H11 GOL sing 159 n n 
C1 H12 GOL sing 160 n n 
O1 HO1 GOL sing 161 n n 
C2 O2 GOL sing 162 n n 
C2 C3 GOL sing 163 n n 
C2 H2 GOL sing 164 n n 
O2 HO2 GOL sing 165 n n 
C3 O3 GOL sing 166 n n 
C3 H31 GOL sing 167 n n 
C3 H32 GOL sing 168 n n 
O3 HO3 GOL sing 169 n n 
#
_atom_sites.entry_id                     4NMT 
_atom_sites.fract_transf_matrix[1][1]    0.027789 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020858 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010261 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 GOL A 1 401 1 GOL GOL . 
F 3 GOL B 1 401 3 GOL GOL . 
G 4 HOH A 1 501 1 HOH HOH . 
G 4 HOH A 2 502 3 HOH HOH . 
G 4 HOH A 3 503 5 HOH HOH . 
G 4 HOH A 4 504 6 HOH HOH . 
G 4 HOH A 5 505 7 HOH HOH . 
G 4 HOH A 6 506 9 HOH HOH . 
G 4 HOH A 7 507 10 HOH HOH . 
G 4 HOH A 8 508 12 HOH HOH . 
G 4 HOH A 9 509 17 HOH HOH . 
G 4 HOH A 10 510 18 HOH HOH . 
G 4 HOH A 11 511 20 HOH HOH . 
G 4 HOH A 12 512 24 HOH HOH . 
G 4 HOH A 13 513 26 HOH HOH . 
G 4 HOH A 14 514 30 HOH HOH . 
G 4 HOH A 15 515 32 HOH HOH . 
G 4 HOH A 16 516 33 HOH HOH . 
G 4 HOH A 17 517 41 HOH HOH . 
G 4 HOH A 18 518 44 HOH HOH . 
G 4 HOH A 19 519 45 HOH HOH . 
G 4 HOH A 20 520 49 HOH HOH . 
G 4 HOH A 21 521 50 HOH HOH . 
G 4 HOH A 22 522 51 HOH HOH . 
G 4 HOH A 23 523 53 HOH HOH . 
G 4 HOH A 24 524 54 HOH HOH . 
G 4 HOH A 25 525 55 HOH HOH . 
G 4 HOH A 26 526 56 HOH HOH . 
G 4 HOH A 27 527 57 HOH HOH . 
G 4 HOH A 28 528 59 HOH HOH . 
G 4 HOH A 29 529 62 HOH HOH . 
G 4 HOH A 30 530 63 HOH HOH . 
G 4 HOH A 31 531 65 HOH HOH . 
G 4 HOH A 32 532 69 HOH HOH . 
G 4 HOH A 33 533 71 HOH HOH . 
G 4 HOH A 34 534 72 HOH HOH . 
G 4 HOH A 35 535 73 HOH HOH . 
G 4 HOH A 36 536 74 HOH HOH . 
G 4 HOH A 37 537 75 HOH HOH . 
G 4 HOH A 38 538 77 HOH HOH . 
G 4 HOH A 39 539 78 HOH HOH . 
G 4 HOH A 40 540 79 HOH HOH . 
G 4 HOH A 41 541 80 HOH HOH . 
G 4 HOH A 42 542 83 HOH HOH . 
G 4 HOH A 43 543 90 HOH HOH . 
G 4 HOH A 44 544 91 HOH HOH . 
G 4 HOH A 45 545 94 HOH HOH . 
G 4 HOH A 46 546 99 HOH HOH . 
G 4 HOH A 47 547 103 HOH HOH . 
G 4 HOH A 48 548 104 HOH HOH . 
G 4 HOH A 49 549 107 HOH HOH . 
G 4 HOH A 50 550 108 HOH HOH . 
G 4 HOH A 51 551 109 HOH HOH . 
G 4 HOH A 52 552 112 HOH HOH . 
G 4 HOH A 53 553 113 HOH HOH . 
G 4 HOH A 54 554 115 HOH HOH . 
G 4 HOH A 55 555 122 HOH HOH . 
G 4 HOH A 56 556 123 HOH HOH . 
G 4 HOH A 57 557 124 HOH HOH . 
G 4 HOH A 58 558 128 HOH HOH . 
G 4 HOH A 59 559 131 HOH HOH . 
G 4 HOH A 60 560 134 HOH HOH . 
G 4 HOH A 61 561 136 HOH HOH . 
G 4 HOH A 62 562 137 HOH HOH . 
G 4 HOH A 63 563 138 HOH HOH . 
G 4 HOH A 64 564 139 HOH HOH . 
G 4 HOH A 65 565 140 HOH HOH . 
G 4 HOH A 66 566 143 HOH HOH . 
G 4 HOH A 67 567 144 HOH HOH . 
G 4 HOH A 68 568 153 HOH HOH . 
G 4 HOH A 69 569 155 HOH HOH . 
G 4 HOH A 70 570 157 HOH HOH . 
G 4 HOH A 71 571 158 HOH HOH . 
G 4 HOH A 72 572 161 HOH HOH . 
G 4 HOH A 73 573 170 HOH HOH . 
G 4 HOH A 74 574 171 HOH HOH . 
G 4 HOH A 75 575 182 HOH HOH . 
G 4 HOH A 76 576 184 HOH HOH . 
G 4 HOH A 77 577 187 HOH HOH . 
G 4 HOH A 78 578 191 HOH HOH . 
G 4 HOH A 79 579 193 HOH HOH . 
G 4 HOH A 80 580 198 HOH HOH . 
G 4 HOH A 81 581 199 HOH HOH . 
G 4 HOH A 82 582 200 HOH HOH . 
G 4 HOH A 83 583 201 HOH HOH . 
G 4 HOH A 84 584 202 HOH HOH . 
G 4 HOH A 85 585 203 HOH HOH . 
G 4 HOH A 86 586 205 HOH HOH . 
G 4 HOH A 87 587 207 HOH HOH . 
G 4 HOH A 88 588 208 HOH HOH . 
G 4 HOH A 89 589 214 HOH HOH . 
G 4 HOH A 90 590 219 HOH HOH . 
G 4 HOH A 91 591 220 HOH HOH . 
G 4 HOH A 92 592 221 HOH HOH . 
G 4 HOH A 93 593 222 HOH HOH . 
G 4 HOH A 94 594 223 HOH HOH . 
G 4 HOH A 95 595 224 HOH HOH . 
G 4 HOH A 96 596 226 HOH HOH . 
H 4 HOH B 1 501 8 HOH HOH . 
H 4 HOH B 2 502 11 HOH HOH . 
H 4 HOH B 3 503 13 HOH HOH . 
H 4 HOH B 4 504 14 HOH HOH . 
H 4 HOH B 5 505 15 HOH HOH . 
H 4 HOH B 6 506 16 HOH HOH . 
H 4 HOH B 7 507 21 HOH HOH . 
H 4 HOH B 8 508 22 HOH HOH . 
H 4 HOH B 9 509 25 HOH HOH . 
H 4 HOH B 10 510 27 HOH HOH . 
H 4 HOH B 11 511 28 HOH HOH . 
H 4 HOH B 12 512 29 HOH HOH . 
H 4 HOH B 13 513 31 HOH HOH . 
H 4 HOH B 14 514 34 HOH HOH . 
H 4 HOH B 15 515 35 HOH HOH . 
H 4 HOH B 16 516 36 HOH HOH . 
H 4 HOH B 17 517 37 HOH HOH . 
H 4 HOH B 18 518 38 HOH HOH . 
H 4 HOH B 19 519 40 HOH HOH . 
H 4 HOH B 20 520 42 HOH HOH . 
H 4 HOH B 21 521 43 HOH HOH . 
H 4 HOH B 22 522 46 HOH HOH . 
H 4 HOH B 23 523 47 HOH HOH . 
H 4 HOH B 24 524 48 HOH HOH . 
H 4 HOH B 25 525 58 HOH HOH . 
H 4 HOH B 26 526 60 HOH HOH . 
H 4 HOH B 27 527 61 HOH HOH . 
H 4 HOH B 28 528 64 HOH HOH . 
H 4 HOH B 29 529 70 HOH HOH . 
H 4 HOH B 30 530 76 HOH HOH . 
H 4 HOH B 31 531 82 HOH HOH . 
H 4 HOH B 32 532 85 HOH HOH . 
H 4 HOH B 33 533 87 HOH HOH . 
H 4 HOH B 34 534 89 HOH HOH . 
H 4 HOH B 35 535 92 HOH HOH . 
H 4 HOH B 36 536 95 HOH HOH . 
H 4 HOH B 37 537 96 HOH HOH . 
H 4 HOH B 38 538 97 HOH HOH . 
H 4 HOH B 39 539 100 HOH HOH . 
H 4 HOH B 40 540 101 HOH HOH . 
H 4 HOH B 41 541 102 HOH HOH . 
H 4 HOH B 42 542 105 HOH HOH . 
H 4 HOH B 43 543 106 HOH HOH . 
H 4 HOH B 44 544 110 HOH HOH . 
H 4 HOH B 45 545 111 HOH HOH . 
H 4 HOH B 46 546 114 HOH HOH . 
H 4 HOH B 47 547 116 HOH HOH . 
H 4 HOH B 48 548 117 HOH HOH . 
H 4 HOH B 49 549 118 HOH HOH . 
H 4 HOH B 50 550 121 HOH HOH . 
H 4 HOH B 51 551 126 HOH HOH . 
H 4 HOH B 52 552 127 HOH HOH . 
H 4 HOH B 53 553 132 HOH HOH . 
H 4 HOH B 54 554 133 HOH HOH . 
H 4 HOH B 55 555 135 HOH HOH . 
H 4 HOH B 56 556 141 HOH HOH . 
H 4 HOH B 57 557 142 HOH HOH . 
H 4 HOH B 58 558 145 HOH HOH . 
H 4 HOH B 59 559 147 HOH HOH . 
H 4 HOH B 60 560 149 HOH HOH . 
H 4 HOH B 61 561 150 HOH HOH . 
H 4 HOH B 62 562 152 HOH HOH . 
H 4 HOH B 63 563 154 HOH HOH . 
H 4 HOH B 64 564 156 HOH HOH . 
H 4 HOH B 65 565 160 HOH HOH . 
H 4 HOH B 66 566 162 HOH HOH . 
H 4 HOH B 67 567 163 HOH HOH . 
H 4 HOH B 68 568 164 HOH HOH . 
H 4 HOH B 69 569 165 HOH HOH . 
H 4 HOH B 70 570 167 HOH HOH . 
H 4 HOH B 71 571 172 HOH HOH . 
H 4 HOH B 72 572 176 HOH HOH . 
H 4 HOH B 73 573 178 HOH HOH . 
H 4 HOH B 74 574 180 HOH HOH . 
H 4 HOH B 75 575 181 HOH HOH . 
H 4 HOH B 76 576 183 HOH HOH . 
H 4 HOH B 77 577 186 HOH HOH . 
H 4 HOH B 78 578 188 HOH HOH . 
H 4 HOH B 79 579 189 HOH HOH . 
H 4 HOH B 80 580 190 HOH HOH . 
H 4 HOH B 81 581 192 HOH HOH . 
H 4 HOH B 82 582 195 HOH HOH . 
H 4 HOH B 83 583 197 HOH HOH . 
H 4 HOH B 84 584 204 HOH HOH . 
H 4 HOH B 85 585 206 HOH HOH . 
H 4 HOH B 86 586 209 HOH HOH . 
H 4 HOH B 87 587 210 HOH HOH . 
H 4 HOH B 88 588 211 HOH HOH . 
H 4 HOH B 89 589 213 HOH HOH . 
H 4 HOH B 90 590 215 HOH HOH . 
H 4 HOH B 91 591 216 HOH HOH . 
H 4 HOH B 92 592 217 HOH HOH . 
H 4 HOH B 93 593 225 HOH HOH . 
H 4 HOH B 94 594 227 HOH HOH . 
H 4 HOH B 95 595 228 HOH HOH . 
I 4 HOH C 1 101 2 HOH HOH . 
I 4 HOH C 2 102 4 HOH HOH . 
I 4 HOH C 3 103 23 HOH HOH . 
I 4 HOH C 4 104 39 HOH HOH . 
I 4 HOH C 5 105 52 HOH HOH . 
I 4 HOH C 6 106 68 HOH HOH . 
I 4 HOH C 7 107 81 HOH HOH . 
I 4 HOH C 8 108 86 HOH HOH . 
I 4 HOH C 9 109 88 HOH HOH . 
I 4 HOH C 10 110 98 HOH HOH . 
I 4 HOH C 11 111 146 HOH HOH . 
I 4 HOH C 12 112 168 HOH HOH . 
I 4 HOH C 13 113 169 HOH HOH . 
I 4 HOH C 14 114 173 HOH HOH . 
I 4 HOH C 15 115 174 HOH HOH . 
I 4 HOH C 16 116 177 HOH HOH . 
J 4 HOH D 1 101 19 HOH HOH . 
J 4 HOH D 2 102 66 HOH HOH . 
J 4 HOH D 3 103 67 HOH HOH . 
J 4 HOH D 4 104 84 HOH HOH . 
J 4 HOH D 5 105 93 HOH HOH . 
J 4 HOH D 6 106 119 HOH HOH . 
J 4 HOH D 7 107 120 HOH HOH . 
J 4 HOH D 8 108 125 HOH HOH . 
J 4 HOH D 9 109 129 HOH HOH . 
J 4 HOH D 10 110 130 HOH HOH . 
J 4 HOH D 11 111 148 HOH HOH . 
J 4 HOH D 12 112 159 HOH HOH . 
J 4 HOH D 13 113 166 HOH HOH . 
J 4 HOH D 14 114 175 HOH HOH . 
J 4 HOH D 15 115 179 HOH HOH . 
J 4 HOH D 16 116 185 HOH HOH . 
J 4 HOH D 17 117 212 HOH HOH . 
J 4 HOH D 18 118 218 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 3 -7.298 10.196 20.899 1 13.61 ? C1 GOL 401 A 1 
HETATM 2 O O1 GOL . . . E 3 -8.113 9.266 20.216 1 12.16 ? O1 GOL 401 A 1 
HETATM 3 C C2 GOL . . . E 3 -8.05 10.71 22.116 1 16.23 ? C2 GOL 401 A 1 
HETATM 4 O O2 GOL . . . E 3 -8.387 9.621 22.962 1 18.17 ? O2 GOL 401 A 1 
HETATM 5 C C3 GOL . . . E 3 -9.303 11.418 21.613 1 23.47 ? C3 GOL 401 A 1 
HETATM 6 O O3 GOL . . . E 3 -9.897 12.128 22.675 1 35.1 ? O3 GOL 401 A 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           6 
#