data_4NNM # _model_server_result.job_id dpkIIvEdazD7e6oYosD2nw _model_server_result.datetime_utc '2024-11-05 01:26:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4nnm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":201}' # _entry.id 4NNM # _exptl.entry_id 4NNM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 79.62 _cell.angle_beta 87.61 _cell.angle_gamma 90 _cell.entry_id 4NNM _cell.length_a 27.009 _cell.length_b 35.043 _cell.length_c 65.626 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4NNM _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,G,I 1 1 B,D,F,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 4NNM _atom_sites.fract_transf_matrix[1][1] 0.037025 _atom_sites.fract_transf_matrix[1][2] -0.000002 _atom_sites.fract_transf_matrix[1][3] -0.001568 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.028537 _atom_sites.fract_transf_matrix[2][3] -0.00523 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015505 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GOL A 1 201 1 GOL GOL . F 3 GOL B 1 201 3 GOL GOL . G 4 HOH A 1 301 4 HOH HOH . G 4 HOH A 2 302 6 HOH HOH . G 4 HOH A 3 303 7 HOH HOH . G 4 HOH A 4 304 8 HOH HOH . G 4 HOH A 5 305 15 HOH HOH . G 4 HOH A 6 306 16 HOH HOH . G 4 HOH A 7 307 17 HOH HOH . G 4 HOH A 8 308 23 HOH HOH . G 4 HOH A 9 309 25 HOH HOH . G 4 HOH A 10 310 26 HOH HOH . G 4 HOH A 11 311 27 HOH HOH . G 4 HOH A 12 312 28 HOH HOH . G 4 HOH A 13 313 29 HOH HOH . G 4 HOH A 14 314 31 HOH HOH . G 4 HOH A 15 315 33 HOH HOH . G 4 HOH A 16 316 34 HOH HOH . G 4 HOH A 17 317 35 HOH HOH . G 4 HOH A 18 318 36 HOH HOH . G 4 HOH A 19 319 37 HOH HOH . G 4 HOH A 20 320 39 HOH HOH . G 4 HOH A 21 321 41 HOH HOH . G 4 HOH A 22 322 44 HOH HOH . G 4 HOH A 23 323 51 HOH HOH . G 4 HOH A 24 324 52 HOH HOH . G 4 HOH A 25 325 55 HOH HOH . G 4 HOH A 26 326 56 HOH HOH . G 4 HOH A 27 327 57 HOH HOH . G 4 HOH A 28 328 59 HOH HOH . G 4 HOH A 29 329 60 HOH HOH . G 4 HOH A 30 330 62 HOH HOH . G 4 HOH A 31 331 63 HOH HOH . G 4 HOH A 32 332 64 HOH HOH . G 4 HOH A 33 333 65 HOH HOH . G 4 HOH A 34 334 71 HOH HOH . G 4 HOH A 35 335 72 HOH HOH . G 4 HOH A 36 336 77 HOH HOH . G 4 HOH A 37 337 80 HOH HOH . G 4 HOH A 38 338 81 HOH HOH . G 4 HOH A 39 339 82 HOH HOH . G 4 HOH A 40 340 83 HOH HOH . G 4 HOH A 41 341 84 HOH HOH . G 4 HOH A 42 342 85 HOH HOH . G 4 HOH A 43 343 89 HOH HOH . G 4 HOH A 44 344 90 HOH HOH . G 4 HOH A 45 345 91 HOH HOH . G 4 HOH A 46 346 93 HOH HOH . G 4 HOH A 47 347 95 HOH HOH . G 4 HOH A 48 348 96 HOH HOH . G 4 HOH A 49 349 99 HOH HOH . G 4 HOH A 50 350 102 HOH HOH . G 4 HOH A 51 351 103 HOH HOH . G 4 HOH A 52 352 109 HOH HOH . G 4 HOH A 53 353 110 HOH HOH . G 4 HOH A 54 354 113 HOH HOH . G 4 HOH A 55 355 118 HOH HOH . G 4 HOH A 56 356 119 HOH HOH . G 4 HOH A 57 357 124 HOH HOH . G 4 HOH A 58 358 125 HOH HOH . G 4 HOH A 59 359 126 HOH HOH . G 4 HOH A 60 360 127 HOH HOH . G 4 HOH A 61 361 129 HOH HOH . G 4 HOH A 62 362 130 HOH HOH . G 4 HOH A 63 363 131 HOH HOH . G 4 HOH A 64 364 132 HOH HOH . G 4 HOH A 65 365 133 HOH HOH . G 4 HOH A 66 366 134 HOH HOH . G 4 HOH A 67 367 136 HOH HOH . G 4 HOH A 68 368 139 HOH HOH . G 4 HOH A 69 369 140 HOH HOH . G 4 HOH A 70 370 141 HOH HOH . G 4 HOH A 71 371 150 HOH HOH . G 4 HOH A 72 372 151 HOH HOH . G 4 HOH A 73 373 152 HOH HOH . G 4 HOH A 74 374 153 HOH HOH . G 4 HOH A 75 375 156 HOH HOH . G 4 HOH A 76 376 159 HOH HOH . G 4 HOH A 77 377 160 HOH HOH . G 4 HOH A 78 378 161 HOH HOH . G 4 HOH A 79 379 162 HOH HOH . G 4 HOH A 80 380 164 HOH HOH . G 4 HOH A 81 381 165 HOH HOH . G 4 HOH A 82 382 167 HOH HOH . G 4 HOH A 83 383 169 HOH HOH . G 4 HOH A 84 384 174 HOH HOH . G 4 HOH A 85 385 21 HOH HOH . H 4 HOH B 1 301 5 HOH HOH . H 4 HOH B 2 302 9 HOH HOH . H 4 HOH B 3 303 10 HOH HOH . H 4 HOH B 4 304 11 HOH HOH . H 4 HOH B 5 305 12 HOH HOH . H 4 HOH B 6 306 14 HOH HOH . H 4 HOH B 7 307 18 HOH HOH . H 4 HOH B 8 308 20 HOH HOH . H 4 HOH B 9 309 22 HOH HOH . H 4 HOH B 10 310 32 HOH HOH . H 4 HOH B 11 311 38 HOH HOH . H 4 HOH B 12 312 40 HOH HOH . H 4 HOH B 13 313 42 HOH HOH . H 4 HOH B 14 314 43 HOH HOH . H 4 HOH B 15 315 45 HOH HOH . H 4 HOH B 16 316 46 HOH HOH . H 4 HOH B 17 317 47 HOH HOH . H 4 HOH B 18 318 48 HOH HOH . H 4 HOH B 19 319 49 HOH HOH . H 4 HOH B 20 320 50 HOH HOH . H 4 HOH B 21 321 53 HOH HOH . H 4 HOH B 22 322 54 HOH HOH . H 4 HOH B 23 323 58 HOH HOH . H 4 HOH B 24 324 61 HOH HOH . H 4 HOH B 25 325 67 HOH HOH . H 4 HOH B 26 326 68 HOH HOH . H 4 HOH B 27 327 69 HOH HOH . H 4 HOH B 28 328 70 HOH HOH . H 4 HOH B 29 329 73 HOH HOH . H 4 HOH B 30 330 74 HOH HOH . H 4 HOH B 31 331 75 HOH HOH . H 4 HOH B 32 332 78 HOH HOH . H 4 HOH B 33 333 79 HOH HOH . H 4 HOH B 34 334 86 HOH HOH . H 4 HOH B 35 335 87 HOH HOH . H 4 HOH B 36 336 88 HOH HOH . H 4 HOH B 37 337 92 HOH HOH . H 4 HOH B 38 338 94 HOH HOH . H 4 HOH B 39 339 97 HOH HOH . H 4 HOH B 40 340 100 HOH HOH . H 4 HOH B 41 341 104 HOH HOH . H 4 HOH B 42 342 106 HOH HOH . H 4 HOH B 43 343 111 HOH HOH . H 4 HOH B 44 344 112 HOH HOH . H 4 HOH B 45 345 114 HOH HOH . H 4 HOH B 46 346 115 HOH HOH . H 4 HOH B 47 347 116 HOH HOH . H 4 HOH B 48 348 120 HOH HOH . H 4 HOH B 49 349 121 HOH HOH . H 4 HOH B 50 350 122 HOH HOH . H 4 HOH B 51 351 123 HOH HOH . H 4 HOH B 52 352 128 HOH HOH . H 4 HOH B 53 353 135 HOH HOH . H 4 HOH B 54 354 137 HOH HOH . H 4 HOH B 55 355 138 HOH HOH . H 4 HOH B 56 356 145 HOH HOH . H 4 HOH B 57 357 146 HOH HOH . H 4 HOH B 58 358 147 HOH HOH . H 4 HOH B 59 359 154 HOH HOH . H 4 HOH B 60 360 155 HOH HOH . H 4 HOH B 61 361 157 HOH HOH . H 4 HOH B 62 362 158 HOH HOH . H 4 HOH B 63 363 163 HOH HOH . H 4 HOH B 64 364 168 HOH HOH . H 4 HOH B 65 365 170 HOH HOH . H 4 HOH B 66 366 171 HOH HOH . H 4 HOH B 67 367 172 HOH HOH . H 4 HOH B 68 368 173 HOH HOH . H 4 HOH B 69 369 24 HOH HOH . I 4 HOH C 1 101 19 HOH HOH . I 4 HOH C 2 102 66 HOH HOH . I 4 HOH C 3 103 105 HOH HOH . I 4 HOH C 4 104 108 HOH HOH . I 4 HOH C 5 105 144 HOH HOH . I 4 HOH C 6 106 166 HOH HOH . J 4 HOH D 1 101 13 HOH HOH . J 4 HOH D 2 102 30 HOH HOH . J 4 HOH D 3 103 76 HOH HOH . J 4 HOH D 4 104 107 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 3 32.548 42.209 37 1 62.49 ? C1 GOL 201 B 1 HETATM 2 O O1 GOL . . . F 3 31.25 42.765 36.965 1 35.61 ? O1 GOL 201 B 1 HETATM 3 C C2 GOL . . . F 3 32.474 40.738 37.402 1 66.81 ? C2 GOL 201 B 1 HETATM 4 O O2 GOL . . . F 3 33.127 39.952 36.423 1 31.66 ? O2 GOL 201 B 1 HETATM 5 C C3 GOL . . . F 3 33.117 40.546 38.777 1 62.18 ? C3 GOL 201 B 1 HETATM 6 O O3 GOL . . . F 3 32.245 39.86 39.661 1 24.67 ? O3 GOL 201 B 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 212 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #