data_4NNX # _model_server_result.job_id nTxiRiOZXTMbKDO1LboAzg _model_server_result.datetime_utc '2024-11-04 20:45:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4nnx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":101}' # _entry.id 4NNX # _exptl.entry_id 4NNX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4NNX _cell.length_a 61.1 _cell.length_b 79.8 _cell.length_c 111.3 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4NNX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 101 A CYS 101 1_555 A SG CYS 164 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 A SG CYS 203 A CYS 203 1_555 A SG CYS 259 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf3 B SG CYS 25 B CYS 25 1_555 B SG CYS 80 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? covale ? covale1 C C ALA 3 C ALA 3 1_555 C N SEP 4 C SEP 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale2 C C SEP 4 C SEP 4 1_555 C N LEU 5 C LEU 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? metalc ? metalc1 A OD1 ASP 30 A ASP 30 1_555 E CD CD . A CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? metalc ? metalc2 A OD2 ASP 30 A ASP 30 1_555 E CD CD . A CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.571 ? metalc ? metalc3 A ND1 HIS 151 A HIS 151 1_555 D CD CD . A CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc4 A OE2 GLU 154 A GLU 154 1_555 D CD CD . A CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc5 A OE1 GLU 154 A GLU 154 1_555 D CD CD . A CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? metalc ? metalc6 A NE2 HIS 197 A HIS 197 1_555 F CD CD . A CD 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? metalc ? metalc7 A OE1 GLU 212 A GLU 212 1_555 E CD CD . A CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc8 E CD CD . A CD 302 1_555 I O HOH . A HOH 523 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? metalc ? metalc9 I O HOH . A HOH 530 1_555 H CD CD . B CD 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? metalc ? metalc10 B NE2 HIS 51 B HIS 51 1_555 H CD CD . B CD 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc11 H CD CD . B CD 102 1_555 J O HOH . B HOH 240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? metalc ? metalc12 H CD CD . B CD 102 1_555 J O HOH . B HOH 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 4NNX _atom_sites.fract_transf_matrix[1][1] 0.016367 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012531 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008985 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CD A 1 301 1 CD CD . E 4 CD A 1 302 2 CD CD . F 4 CD A 1 303 4 CD CD . G 5 GOL B 1 101 100 GOL GOL . H 4 CD B 1 102 3 CD CD . I 6 HOH A 1 401 2 HOH HOH . I 6 HOH A 2 402 3 HOH HOH . I 6 HOH A 3 403 4 HOH HOH . I 6 HOH A 4 404 5 HOH HOH . I 6 HOH A 5 405 6 HOH HOH . I 6 HOH A 6 406 7 HOH HOH . I 6 HOH A 7 407 8 HOH HOH . I 6 HOH A 8 408 10 HOH HOH . I 6 HOH A 9 409 12 HOH HOH . I 6 HOH A 10 410 13 HOH HOH . I 6 HOH A 11 411 14 HOH HOH . I 6 HOH A 12 412 15 HOH HOH . I 6 HOH A 13 413 16 HOH HOH . I 6 HOH A 14 414 19 HOH HOH . I 6 HOH A 15 415 22 HOH HOH . I 6 HOH A 16 416 23 HOH HOH . I 6 HOH A 17 417 24 HOH HOH . I 6 HOH A 18 418 25 HOH HOH . I 6 HOH A 19 419 27 HOH HOH . I 6 HOH A 20 420 28 HOH HOH . I 6 HOH A 21 421 29 HOH HOH . I 6 HOH A 22 422 30 HOH HOH . I 6 HOH A 23 423 31 HOH HOH . I 6 HOH A 24 424 32 HOH HOH . I 6 HOH A 25 425 33 HOH HOH . I 6 HOH A 26 426 34 HOH HOH . I 6 HOH A 27 427 35 HOH HOH . I 6 HOH A 28 428 37 HOH HOH . I 6 HOH A 29 429 38 HOH HOH . I 6 HOH A 30 430 39 HOH HOH . I 6 HOH A 31 431 40 HOH HOH . I 6 HOH A 32 432 41 HOH HOH . I 6 HOH A 33 433 42 HOH HOH . I 6 HOH A 34 434 43 HOH HOH . I 6 HOH A 35 435 44 HOH HOH . I 6 HOH A 36 436 46 HOH HOH . I 6 HOH A 37 437 47 HOH HOH . I 6 HOH A 38 438 49 HOH HOH . I 6 HOH A 39 439 50 HOH HOH . I 6 HOH A 40 440 54 HOH HOH . I 6 HOH A 41 441 55 HOH HOH . I 6 HOH A 42 442 57 HOH HOH . I 6 HOH A 43 443 58 HOH HOH . I 6 HOH A 44 444 59 HOH HOH . I 6 HOH A 45 445 60 HOH HOH . I 6 HOH A 46 446 61 HOH HOH . I 6 HOH A 47 447 63 HOH HOH . I 6 HOH A 48 448 65 HOH HOH . I 6 HOH A 49 449 67 HOH HOH . I 6 HOH A 50 450 68 HOH HOH . I 6 HOH A 51 451 69 HOH HOH . I 6 HOH A 52 452 70 HOH HOH . I 6 HOH A 53 453 71 HOH HOH . I 6 HOH A 54 454 72 HOH HOH . I 6 HOH A 55 455 73 HOH HOH . I 6 HOH A 56 456 77 HOH HOH . I 6 HOH A 57 457 78 HOH HOH . I 6 HOH A 58 458 79 HOH HOH . I 6 HOH A 59 459 80 HOH HOH . I 6 HOH A 60 460 81 HOH HOH . I 6 HOH A 61 461 82 HOH HOH . I 6 HOH A 62 462 83 HOH HOH . I 6 HOH A 63 463 86 HOH HOH . I 6 HOH A 64 464 87 HOH HOH . I 6 HOH A 65 465 89 HOH HOH . I 6 HOH A 66 466 90 HOH HOH . I 6 HOH A 67 467 91 HOH HOH . I 6 HOH A 68 468 92 HOH HOH . I 6 HOH A 69 469 95 HOH HOH . I 6 HOH A 70 470 96 HOH HOH . I 6 HOH A 71 471 97 HOH HOH . I 6 HOH A 72 472 98 HOH HOH . I 6 HOH A 73 473 99 HOH HOH . I 6 HOH A 74 474 100 HOH HOH . I 6 HOH A 75 475 102 HOH HOH . I 6 HOH A 76 476 104 HOH HOH . I 6 HOH A 77 477 105 HOH HOH . I 6 HOH A 78 478 107 HOH HOH . I 6 HOH A 79 479 108 HOH HOH . I 6 HOH A 80 480 109 HOH HOH . I 6 HOH A 81 481 110 HOH HOH . I 6 HOH A 82 482 111 HOH HOH . I 6 HOH A 83 483 112 HOH HOH . I 6 HOH A 84 484 113 HOH HOH . I 6 HOH A 85 485 114 HOH HOH . I 6 HOH A 86 486 115 HOH HOH . I 6 HOH A 87 487 118 HOH HOH . I 6 HOH A 88 488 120 HOH HOH . I 6 HOH A 89 489 122 HOH HOH . I 6 HOH A 90 490 123 HOH HOH . I 6 HOH A 91 491 124 HOH HOH . I 6 HOH A 92 492 126 HOH HOH . I 6 HOH A 93 493 127 HOH HOH . I 6 HOH A 94 494 128 HOH HOH . I 6 HOH A 95 495 130 HOH HOH . I 6 HOH A 96 496 131 HOH HOH . I 6 HOH A 97 497 132 HOH HOH . I 6 HOH A 98 498 134 HOH HOH . I 6 HOH A 99 499 135 HOH HOH . I 6 HOH A 100 500 136 HOH HOH . I 6 HOH A 101 501 137 HOH HOH . I 6 HOH A 102 502 138 HOH HOH . I 6 HOH A 103 503 139 HOH HOH . I 6 HOH A 104 504 141 HOH HOH . I 6 HOH A 105 505 143 HOH HOH . I 6 HOH A 106 506 144 HOH HOH . I 6 HOH A 107 507 145 HOH HOH . I 6 HOH A 108 508 146 HOH HOH . I 6 HOH A 109 509 147 HOH HOH . I 6 HOH A 110 510 148 HOH HOH . I 6 HOH A 111 511 150 HOH HOH . I 6 HOH A 112 512 152 HOH HOH . I 6 HOH A 113 513 153 HOH HOH . I 6 HOH A 114 514 154 HOH HOH . I 6 HOH A 115 515 156 HOH HOH . I 6 HOH A 116 516 157 HOH HOH . I 6 HOH A 117 517 159 HOH HOH . I 6 HOH A 118 518 160 HOH HOH . I 6 HOH A 119 519 162 HOH HOH . I 6 HOH A 120 520 163 HOH HOH . I 6 HOH A 121 521 164 HOH HOH . I 6 HOH A 122 522 165 HOH HOH . I 6 HOH A 123 523 166 HOH HOH . I 6 HOH A 124 524 167 HOH HOH . I 6 HOH A 125 525 170 HOH HOH . I 6 HOH A 126 526 171 HOH HOH . I 6 HOH A 127 527 172 HOH HOH . I 6 HOH A 128 528 174 HOH HOH . I 6 HOH A 129 529 175 HOH HOH . I 6 HOH A 130 530 176 HOH HOH . I 6 HOH A 131 531 179 HOH HOH . I 6 HOH A 132 532 180 HOH HOH . I 6 HOH A 133 533 181 HOH HOH . I 6 HOH A 134 534 182 HOH HOH . I 6 HOH A 135 535 183 HOH HOH . I 6 HOH A 136 536 184 HOH HOH . I 6 HOH A 137 537 185 HOH HOH . I 6 HOH A 138 538 186 HOH HOH . I 6 HOH A 139 539 187 HOH HOH . I 6 HOH A 140 540 188 HOH HOH . I 6 HOH A 141 541 190 HOH HOH . I 6 HOH A 142 542 191 HOH HOH . I 6 HOH A 143 543 192 HOH HOH . I 6 HOH A 144 544 193 HOH HOH . I 6 HOH A 145 545 201 HOH HOH . I 6 HOH A 146 546 203 HOH HOH . I 6 HOH A 147 547 204 HOH HOH . I 6 HOH A 148 548 207 HOH HOH . I 6 HOH A 149 549 208 HOH HOH . I 6 HOH A 150 550 209 HOH HOH . I 6 HOH A 151 551 210 HOH HOH . I 6 HOH A 152 552 212 HOH HOH . J 6 HOH B 1 201 9 HOH HOH . J 6 HOH B 2 202 11 HOH HOH . J 6 HOH B 3 203 17 HOH HOH . J 6 HOH B 4 204 18 HOH HOH . J 6 HOH B 5 205 20 HOH HOH . J 6 HOH B 6 206 21 HOH HOH . J 6 HOH B 7 207 26 HOH HOH . J 6 HOH B 8 208 36 HOH HOH . J 6 HOH B 9 209 45 HOH HOH . J 6 HOH B 10 210 48 HOH HOH . J 6 HOH B 11 211 51 HOH HOH . J 6 HOH B 12 212 52 HOH HOH . J 6 HOH B 13 213 53 HOH HOH . J 6 HOH B 14 214 56 HOH HOH . J 6 HOH B 15 215 62 HOH HOH . J 6 HOH B 16 216 66 HOH HOH . J 6 HOH B 17 217 74 HOH HOH . J 6 HOH B 18 218 75 HOH HOH . J 6 HOH B 19 219 76 HOH HOH . J 6 HOH B 20 220 84 HOH HOH . J 6 HOH B 21 221 85 HOH HOH . J 6 HOH B 22 222 88 HOH HOH . J 6 HOH B 23 223 93 HOH HOH . J 6 HOH B 24 224 101 HOH HOH . J 6 HOH B 25 225 116 HOH HOH . J 6 HOH B 26 226 117 HOH HOH . J 6 HOH B 27 227 119 HOH HOH . J 6 HOH B 28 228 121 HOH HOH . J 6 HOH B 29 229 125 HOH HOH . J 6 HOH B 30 230 133 HOH HOH . J 6 HOH B 31 231 140 HOH HOH . J 6 HOH B 32 232 142 HOH HOH . J 6 HOH B 33 233 149 HOH HOH . J 6 HOH B 34 234 151 HOH HOH . J 6 HOH B 35 235 158 HOH HOH . J 6 HOH B 36 236 161 HOH HOH . J 6 HOH B 37 237 168 HOH HOH . J 6 HOH B 38 238 169 HOH HOH . J 6 HOH B 39 239 173 HOH HOH . J 6 HOH B 40 240 177 HOH HOH . J 6 HOH B 41 241 178 HOH HOH . J 6 HOH B 42 242 194 HOH HOH . J 6 HOH B 43 243 195 HOH HOH . J 6 HOH B 44 244 196 HOH HOH . J 6 HOH B 45 245 197 HOH HOH . J 6 HOH B 46 246 198 HOH HOH . J 6 HOH B 47 247 211 HOH HOH . K 6 HOH C 1 101 64 HOH HOH . K 6 HOH C 2 102 94 HOH HOH . K 6 HOH C 3 103 103 HOH HOH . K 6 HOH C 4 104 155 HOH HOH . K 6 HOH C 5 105 206 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 5 26.356 -14.601 -30.672 1 21.47 ? C1 GOL 101 B 1 HETATM 2 O O1 GOL . . . G 5 26.447 -13.189 -30.718 1 20.95 ? O1 GOL 101 B 1 HETATM 3 C C2 GOL . . . G 5 24.931 -15.137 -30.598 1 21.53 ? C2 GOL 101 B 1 HETATM 4 O O2 GOL . . . G 5 24.149 -14.887 -31.774 1 22.13 ? O2 GOL 101 B 1 HETATM 5 C C3 GOL . . . G 5 25.003 -16.644 -30.356 1 21.96 ? C3 GOL 101 B 1 HETATM 6 O O3 GOL . . . G 5 23.676 -17.138 -30.266 1 20.42 ? O3 GOL 101 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 6 #