data_4NO9 # _model_server_result.job_id adxFswzzXcINwzo92m4qiQ _model_server_result.datetime_utc '2024-12-18 02:04:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4no9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"KA","auth_seq_id":302}' # _entry.id 4NO9 # _exptl.entry_id 4NO9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 15 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 114.15 _cell.angle_gamma 90 _cell.entry_id 4NO9 _cell.length_a 136.49 _cell.length_b 301.49 _cell.length_c 144.39 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4NO9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details 28-meric _pdbx_struct_assembly.oligomeric_count 28 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 15 CA N N ? 15 EA N N ? 15 FA N N ? 15 HA N N ? 15 IA N N ? 15 KA N N ? 15 MA N N ? 15 NA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 H OG1 THR 1 H THR 1 1_555 DA C33 2L0 . H 2L0 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.42 ? covale ? covale2 H N THR 1 H THR 1 1_555 DA C34 2L0 . H 2L0 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.5 ? covale ? covale3 K OG1 THR 1 K THR 1 1_555 GA C33 2L0 . K 2L0 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.423 ? covale ? covale4 K N THR 1 K THR 1 1_555 GA C34 2L0 . K 2L0 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.489 ? covale ? covale5 V OG1 THR 1 V THR 1 1_555 JA C33 2LR . V 2LR 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale6 Y OG1 THR 1 Y THR 1 1_555 LA C33 2L0 . Y 2L0 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.423 ? covale ? covale7 Y N THR 1 Y THR 1 1_555 LA C34 2L0 . Y 2L0 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.494 ? metalc ? metalc1 G OG1 THR 17 G THR 8 1_555 CA MG MG . G MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? metalc ? metalc2 G O TYR 128 G TYR 119 1_555 CA MG MG . G MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.942 ? metalc ? metalc3 G O ARG 131 G ARG 122 1_555 CA MG MG . G MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.703 ? metalc ? metalc4 G O MET 134 G MET 125 1_555 CA MG MG . G MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc5 H OE1 GLN 91 H GLN 91 1_555 EA MG MG . H MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc6 I O ASP 178 I ASP 177 1_555 FA MG MG . I MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? metalc ? metalc7 I O SER 181 I SER 180 1_555 FA MG MG . I MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.739 ? metalc ? metalc8 I O ASP 205 I ASP 204 1_555 MA MG MG . Y MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc9 K O ALA 165 K ALA 165 1_555 HA MG MG . K MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc10 K O ASP 168 K ASP 168 1_555 HA MG MG . K MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc11 K O SER 171 K SER 171 1_555 HA MG MG . K MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.941 ? metalc ? metalc12 HA MG MG . K MG 302 1_555 W O ASP 205 W ASP 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc13 L OXT ASP 222 L ASP 222 1_555 KA MG MG . V MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc14 N O ILE 163 N ILE 163 1_555 IA MG MG . N MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc15 N O ASP 166 N ASP 166 1_555 IA MG MG . N MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.924 ? metalc ? metalc16 N O SER 169 N SER 169 1_555 IA MG MG . N MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.611 ? metalc ? metalc17 V O ILE 163 V ILE 163 1_555 KA MG MG . V MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc18 V O ASP 166 V ASP 166 1_555 KA MG MG . V MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc19 V O SER 169 V SER 169 1_555 KA MG MG . V MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.916 ? metalc ? metalc20 Y O ALA 165 Y ALA 165 1_555 MA MG MG . Y MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? metalc ? metalc21 Y O ASP 168 Y ASP 168 1_555 MA MG MG . Y MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc22 Y O SER 171 Y SER 171 1_555 MA MG MG . Y MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.777 ? metalc ? metalc23 Z O THR 192 Z THR 192 1_555 NA MG MG . Z MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc24 Z O HIS 195 Z HIS 195 1_555 NA MG MG . Z MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.735 ? metalc ? metalc25 Z O VAL 198 Z VAL 198 1_555 NA MG MG . Z MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.661 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4NO9 _atom_sites.fract_transf_matrix[1][1] 0.007327 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003285 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003317 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00759 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code CA 15 MG G 1 301 8 MG MG . DA 16 2L0 H 1 301 1 2L0 LIG . EA 15 MG H 1 302 7 MG MG . FA 15 MG I 1 301 9 MG MG . GA 16 2L0 K 1 301 1 2L0 LIG . HA 15 MG K 1 302 1 MG MG . IA 15 MG N 1 201 5 MG MG . JA 17 2LR V 1 301 1 2LR LIG . KA 15 MG V 1 302 2 MG MG . LA 16 2L0 Y 1 301 1 2L0 LIG . MA 15 MG Y 1 302 4 MG MG . NA 15 MG Z 1 301 3 MG MG . OA 18 HOH A 1 301 54 HOH HOH . OA 18 HOH A 2 302 79 HOH HOH . OA 18 HOH A 3 303 88 HOH HOH . PA 18 HOH B 1 301 8 HOH HOH . PA 18 HOH B 2 302 112 HOH HOH . PA 18 HOH B 3 303 157 HOH HOH . PA 18 HOH B 4 304 163 HOH HOH . QA 18 HOH C 1 301 113 HOH HOH . RA 18 HOH D 1 301 4 HOH HOH . RA 18 HOH D 2 302 18 HOH HOH . RA 18 HOH D 3 303 45 HOH HOH . RA 18 HOH D 4 304 82 HOH HOH . SA 18 HOH E 1 301 13 HOH HOH . SA 18 HOH E 2 302 66 HOH HOH . TA 18 HOH F 1 301 6 HOH HOH . TA 18 HOH F 2 302 12 HOH HOH . TA 18 HOH F 3 303 63 HOH HOH . TA 18 HOH F 4 304 104 HOH HOH . TA 18 HOH F 5 305 108 HOH HOH . TA 18 HOH F 6 306 147 HOH HOH . UA 18 HOH G 1 401 22 HOH HOH . UA 18 HOH G 2 402 42 HOH HOH . UA 18 HOH G 3 403 69 HOH HOH . UA 18 HOH G 4 404 93 HOH HOH . UA 18 HOH G 5 405 137 HOH HOH . UA 18 HOH G 6 406 168 HOH HOH . VA 18 HOH H 1 401 1 HOH HOH . VA 18 HOH H 2 402 19 HOH HOH . VA 18 HOH H 3 403 62 HOH HOH . VA 18 HOH H 4 404 105 HOH HOH . VA 18 HOH H 5 405 125 HOH HOH . VA 18 HOH H 6 406 127 HOH HOH . VA 18 HOH H 7 407 136 HOH HOH . WA 18 HOH I 1 401 24 HOH HOH . WA 18 HOH I 2 402 33 HOH HOH . WA 18 HOH I 3 403 68 HOH HOH . WA 18 HOH I 4 404 76 HOH HOH . WA 18 HOH I 5 405 78 HOH HOH . XA 18 HOH J 1 201 25 HOH HOH . XA 18 HOH J 2 202 47 HOH HOH . XA 18 HOH J 3 203 48 HOH HOH . XA 18 HOH J 4 204 71 HOH HOH . XA 18 HOH J 5 205 99 HOH HOH . XA 18 HOH J 6 206 117 HOH HOH . XA 18 HOH J 7 207 122 HOH HOH . XA 18 HOH J 8 208 124 HOH HOH . XA 18 HOH J 9 209 138 HOH HOH . XA 18 HOH J 10 210 155 HOH HOH . YA 18 HOH K 1 401 14 HOH HOH . YA 18 HOH K 2 402 17 HOH HOH . YA 18 HOH K 3 403 37 HOH HOH . YA 18 HOH K 4 404 111 HOH HOH . YA 18 HOH K 5 405 123 HOH HOH . YA 18 HOH K 6 406 126 HOH HOH . YA 18 HOH K 7 407 128 HOH HOH . YA 18 HOH K 8 408 135 HOH HOH . YA 18 HOH K 9 409 144 HOH HOH . YA 18 HOH K 10 410 145 HOH HOH . YA 18 HOH K 11 411 151 HOH HOH . YA 18 HOH K 12 412 164 HOH HOH . ZA 18 HOH L 1 301 10 HOH HOH . ZA 18 HOH L 2 302 46 HOH HOH . ZA 18 HOH L 3 303 51 HOH HOH . ZA 18 HOH L 4 304 84 HOH HOH . ZA 18 HOH L 5 305 86 HOH HOH . ZA 18 HOH L 6 306 94 HOH HOH . ZA 18 HOH L 7 307 106 HOH HOH . ZA 18 HOH L 8 308 121 HOH HOH . ZA 18 HOH L 9 309 129 HOH HOH . ZA 18 HOH L 10 310 149 HOH HOH . ZA 18 HOH L 11 311 159 HOH HOH . AB 18 HOH M 1 301 7 HOH HOH . AB 18 HOH M 2 302 29 HOH HOH . AB 18 HOH M 3 303 50 HOH HOH . AB 18 HOH M 4 304 53 HOH HOH . AB 18 HOH M 5 305 77 HOH HOH . AB 18 HOH M 6 306 80 HOH HOH . AB 18 HOH M 7 307 91 HOH HOH . AB 18 HOH M 8 308 97 HOH HOH . AB 18 HOH M 9 309 101 HOH HOH . AB 18 HOH M 10 310 116 HOH HOH . AB 18 HOH M 11 311 132 HOH HOH . AB 18 HOH M 12 312 156 HOH HOH . AB 18 HOH M 13 313 167 HOH HOH . BB 18 HOH N 1 301 11 HOH HOH . BB 18 HOH N 2 302 16 HOH HOH . BB 18 HOH N 3 303 35 HOH HOH . BB 18 HOH N 4 304 49 HOH HOH . BB 18 HOH N 5 305 74 HOH HOH . BB 18 HOH N 6 306 109 HOH HOH . BB 18 HOH N 7 307 114 HOH HOH . CB 18 HOH O 1 301 90 HOH HOH . CB 18 HOH O 2 302 148 HOH HOH . CB 18 HOH O 3 303 161 HOH HOH . CB 18 HOH O 4 304 162 HOH HOH . DB 18 HOH P 1 301 119 HOH HOH . EB 18 HOH Q 1 301 83 HOH HOH . FB 18 HOH R 1 301 60 HOH HOH . FB 18 HOH R 2 302 100 HOH HOH . FB 18 HOH R 3 303 120 HOH HOH . FB 18 HOH R 4 304 131 HOH HOH . GB 18 HOH S 1 301 64 HOH HOH . GB 18 HOH S 2 302 98 HOH HOH . HB 18 HOH T 1 301 36 HOH HOH . HB 18 HOH T 2 302 59 HOH HOH . HB 18 HOH T 3 303 65 HOH HOH . HB 18 HOH T 4 304 72 HOH HOH . HB 18 HOH T 5 305 87 HOH HOH . HB 18 HOH T 6 306 140 HOH HOH . IB 18 HOH U 1 301 9 HOH HOH . IB 18 HOH U 2 302 15 HOH HOH . IB 18 HOH U 3 303 56 HOH HOH . IB 18 HOH U 4 304 81 HOH HOH . IB 18 HOH U 5 305 85 HOH HOH . IB 18 HOH U 6 306 102 HOH HOH . IB 18 HOH U 7 307 110 HOH HOH . IB 18 HOH U 8 308 115 HOH HOH . IB 18 HOH U 9 309 133 HOH HOH . IB 18 HOH U 10 310 139 HOH HOH . IB 18 HOH U 11 311 153 HOH HOH . JB 18 HOH V 1 401 2 HOH HOH . JB 18 HOH V 2 402 3 HOH HOH . JB 18 HOH V 3 403 44 HOH HOH . JB 18 HOH V 4 404 55 HOH HOH . JB 18 HOH V 5 405 61 HOH HOH . JB 18 HOH V 6 406 70 HOH HOH . JB 18 HOH V 7 407 146 HOH HOH . KB 18 HOH W 1 301 40 HOH HOH . KB 18 HOH W 2 302 41 HOH HOH . KB 18 HOH W 3 303 57 HOH HOH . LB 18 HOH X 1 201 26 HOH HOH . LB 18 HOH X 2 202 75 HOH HOH . LB 18 HOH X 3 203 96 HOH HOH . LB 18 HOH X 4 204 107 HOH HOH . LB 18 HOH X 5 205 118 HOH HOH . LB 18 HOH X 6 206 134 HOH HOH . LB 18 HOH X 7 207 141 HOH HOH . LB 18 HOH X 8 208 154 HOH HOH . LB 18 HOH X 9 209 158 HOH HOH . MB 18 HOH Y 1 401 28 HOH HOH . MB 18 HOH Y 2 402 30 HOH HOH . MB 18 HOH Y 3 403 31 HOH HOH . MB 18 HOH Y 4 404 43 HOH HOH . MB 18 HOH Y 5 405 58 HOH HOH . MB 18 HOH Y 6 406 67 HOH HOH . MB 18 HOH Y 7 407 130 HOH HOH . MB 18 HOH Y 8 408 142 HOH HOH . MB 18 HOH Y 9 409 143 HOH HOH . MB 18 HOH Y 10 410 160 HOH HOH . NB 18 HOH Z 1 401 39 HOH HOH . NB 18 HOH Z 2 402 166 HOH HOH . OB 18 HOH a 1 301 27 HOH HOH . OB 18 HOH a 2 302 32 HOH HOH . OB 18 HOH a 3 303 52 HOH HOH . OB 18 HOH a 4 304 73 HOH HOH . OB 18 HOH a 5 305 92 HOH HOH . OB 18 HOH a 6 306 103 HOH HOH . OB 18 HOH a 7 307 152 HOH HOH . OB 18 HOH a 8 308 165 HOH HOH . PB 18 HOH b 1 201 5 HOH HOH . PB 18 HOH b 2 202 20 HOH HOH . PB 18 HOH b 3 203 21 HOH HOH . PB 18 HOH b 4 204 23 HOH HOH . PB 18 HOH b 5 205 34 HOH HOH . PB 18 HOH b 6 206 38 HOH HOH . PB 18 HOH b 7 207 89 HOH HOH . PB 18 HOH b 8 208 95 HOH HOH . PB 18 HOH b 9 209 150 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id KA _atom_site.label_entity_id 15 _atom_site.Cartn_x -1.811 _atom_site.Cartn_y -153.609 _atom_site.Cartn_z 43.749 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 59.91 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 302 _atom_site.auth_asym_id V _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 99 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 116 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #