data_4NOB # _model_server_result.job_id pA7ew7LGd_yoV4NRpUlFdQ _model_server_result.datetime_utc '2024-11-30 10:55:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4nob # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 4NOB # _exptl.entry_id 4NOB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4NOB _cell.length_a 40.275 _cell.length_b 46.803 _cell.length_c 62.062 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4NOB _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 40 1_555 A SG CYS 96 A CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 42 A CYS 56 1_555 A SG CYS 50 A CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? covale ? covale1 A ND2 ASN 76 A ASN 90 1_555 B C1 NAG . A NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? metalc ? metalc1 A OE2 GLU 112 A GLU 126 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc2 C MG MG . A MG 202 1_555 G O HOH . A HOH 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? metalc ? metalc3 C MG MG . A MG 202 1_555 G O HOH . A HOH 362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc4 C MG MG . A MG 202 1_555 G O HOH . A HOH 363 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc5 C MG MG . A MG 202 1_555 G O HOH . A HOH 370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 246 n n C1 O1 NAG sing 247 n n C1 O5 NAG sing 248 n n C1 H1 NAG sing 249 n n C2 C3 NAG sing 250 n n C2 N2 NAG sing 251 n n C2 H2 NAG sing 252 n n C3 C4 NAG sing 253 n n C3 O3 NAG sing 254 n n C3 H3 NAG sing 255 n n C4 C5 NAG sing 256 n n C4 O4 NAG sing 257 n n C4 H4 NAG sing 258 n n C5 C6 NAG sing 259 n n C5 O5 NAG sing 260 n n C5 H5 NAG sing 261 n n C6 O6 NAG sing 262 n n C6 H61 NAG sing 263 n n C6 H62 NAG sing 264 n n C7 C8 NAG sing 265 n n C7 N2 NAG sing 266 n n C7 O7 NAG doub 267 n n C8 H81 NAG sing 268 n n C8 H82 NAG sing 269 n n C8 H83 NAG sing 270 n n N2 HN2 NAG sing 271 n n O1 HO1 NAG sing 272 n n O3 HO3 NAG sing 273 n n O4 HO4 NAG sing 274 n n O6 HO6 NAG sing 275 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4NOB _atom_sites.fract_transf_matrix[1][1] 0.024829 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021366 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016113 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 201 1 NAG NAG . C 3 MG A 1 202 1 MG MG . D 4 EDO A 1 203 1 EDO EDO . E 4 EDO A 1 204 2 EDO EDO . F 4 EDO A 1 205 3 EDO EDO . G 5 HOH A 1 301 1 HOH HOH . G 5 HOH A 2 302 2 HOH HOH . G 5 HOH A 3 303 3 HOH HOH . G 5 HOH A 4 304 4 HOH HOH . G 5 HOH A 5 305 5 HOH HOH . G 5 HOH A 6 306 6 HOH HOH . G 5 HOH A 7 307 7 HOH HOH . G 5 HOH A 8 308 8 HOH HOH . G 5 HOH A 9 309 9 HOH HOH . G 5 HOH A 10 310 10 HOH HOH . G 5 HOH A 11 311 11 HOH HOH . G 5 HOH A 12 312 12 HOH HOH . G 5 HOH A 13 313 13 HOH HOH . G 5 HOH A 14 314 14 HOH HOH . G 5 HOH A 15 315 15 HOH HOH . G 5 HOH A 16 316 17 HOH HOH . G 5 HOH A 17 317 18 HOH HOH . G 5 HOH A 18 318 19 HOH HOH . G 5 HOH A 19 319 20 HOH HOH . G 5 HOH A 20 320 21 HOH HOH . G 5 HOH A 21 321 23 HOH HOH . G 5 HOH A 22 322 24 HOH HOH . G 5 HOH A 23 323 26 HOH HOH . G 5 HOH A 24 324 27 HOH HOH . G 5 HOH A 25 325 28 HOH HOH . G 5 HOH A 26 326 29 HOH HOH . G 5 HOH A 27 327 30 HOH HOH . G 5 HOH A 28 328 31 HOH HOH . G 5 HOH A 29 329 32 HOH HOH . G 5 HOH A 30 330 33 HOH HOH . G 5 HOH A 31 331 35 HOH HOH . G 5 HOH A 32 332 36 HOH HOH . G 5 HOH A 33 333 37 HOH HOH . G 5 HOH A 34 334 39 HOH HOH . G 5 HOH A 35 335 40 HOH HOH . G 5 HOH A 36 336 41 HOH HOH . G 5 HOH A 37 337 42 HOH HOH . G 5 HOH A 38 338 43 HOH HOH . G 5 HOH A 39 339 44 HOH HOH . G 5 HOH A 40 340 45 HOH HOH . G 5 HOH A 41 341 46 HOH HOH . G 5 HOH A 42 342 47 HOH HOH . G 5 HOH A 43 343 48 HOH HOH . G 5 HOH A 44 344 49 HOH HOH . G 5 HOH A 45 345 50 HOH HOH . G 5 HOH A 46 346 51 HOH HOH . G 5 HOH A 47 347 52 HOH HOH . G 5 HOH A 48 348 53 HOH HOH . G 5 HOH A 49 349 55 HOH HOH . G 5 HOH A 50 350 56 HOH HOH . G 5 HOH A 51 351 57 HOH HOH . G 5 HOH A 52 352 58 HOH HOH . G 5 HOH A 53 353 59 HOH HOH . G 5 HOH A 54 354 60 HOH HOH . G 5 HOH A 55 355 63 HOH HOH . G 5 HOH A 56 356 64 HOH HOH . G 5 HOH A 57 357 65 HOH HOH . G 5 HOH A 58 358 67 HOH HOH . G 5 HOH A 59 359 68 HOH HOH . G 5 HOH A 60 360 70 HOH HOH . G 5 HOH A 61 361 72 HOH HOH . G 5 HOH A 62 362 74 HOH HOH . G 5 HOH A 63 363 75 HOH HOH . G 5 HOH A 64 364 76 HOH HOH . G 5 HOH A 65 365 77 HOH HOH . G 5 HOH A 66 366 78 HOH HOH . G 5 HOH A 67 367 79 HOH HOH . G 5 HOH A 68 368 80 HOH HOH . G 5 HOH A 69 369 82 HOH HOH . G 5 HOH A 70 370 83 HOH HOH . G 5 HOH A 71 371 84 HOH HOH . G 5 HOH A 72 372 85 HOH HOH . G 5 HOH A 73 373 86 HOH HOH . G 5 HOH A 74 374 87 HOH HOH . G 5 HOH A 75 375 88 HOH HOH . G 5 HOH A 76 376 89 HOH HOH . G 5 HOH A 77 377 90 HOH HOH . G 5 HOH A 78 378 91 HOH HOH . G 5 HOH A 79 379 93 HOH HOH . G 5 HOH A 80 380 94 HOH HOH . G 5 HOH A 81 381 95 HOH HOH . G 5 HOH A 82 382 96 HOH HOH . G 5 HOH A 83 383 97 HOH HOH . G 5 HOH A 84 384 99 HOH HOH . G 5 HOH A 85 385 100 HOH HOH . G 5 HOH A 86 386 102 HOH HOH . G 5 HOH A 87 387 104 HOH HOH . G 5 HOH A 88 388 105 HOH HOH . G 5 HOH A 89 389 106 HOH HOH . G 5 HOH A 90 390 107 HOH HOH . G 5 HOH A 91 391 108 HOH HOH . G 5 HOH A 92 392 109 HOH HOH . G 5 HOH A 93 393 110 HOH HOH . G 5 HOH A 94 394 111 HOH HOH . G 5 HOH A 95 395 112 HOH HOH . G 5 HOH A 96 396 113 HOH HOH . G 5 HOH A 97 397 115 HOH HOH . G 5 HOH A 98 398 116 HOH HOH . G 5 HOH A 99 399 117 HOH HOH . G 5 HOH A 100 400 118 HOH HOH . G 5 HOH A 101 401 122 HOH HOH . G 5 HOH A 102 402 123 HOH HOH . G 5 HOH A 103 403 124 HOH HOH . G 5 HOH A 104 404 125 HOH HOH . G 5 HOH A 105 405 126 HOH HOH . G 5 HOH A 106 406 127 HOH HOH . G 5 HOH A 107 407 128 HOH HOH . G 5 HOH A 108 408 129 HOH HOH . G 5 HOH A 109 409 130 HOH HOH . G 5 HOH A 110 410 132 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . B 2 28.088 20.213 23.556 1 17.18 ? C1 NAG 201 A 1 HETATM 2 C C2 NAG . . . B 2 27.191 19.402 24.477 1 18.07 ? C2 NAG 201 A 1 HETATM 3 C C3 NAG . . . B 2 26.154 20.289 25.179 1 21.13 ? C3 NAG 201 A 1 HETATM 4 C C4 NAG . . . B 2 26.87 21.42 25.862 1 22.22 ? C4 NAG 201 A 1 HETATM 5 C C5 NAG . . . B 2 27.68 22.13 24.783 1 21.56 ? C5 NAG 201 A 1 HETATM 6 C C6 NAG . . . B 2 28.451 23.335 25.382 1 23.26 ? C6 NAG 201 A 1 HETATM 7 C C7 NAG . . . B 2 26.681 17.082 23.792 1 20.5 ? C7 NAG 201 A 1 HETATM 8 C C8 NAG . . . B 2 25.867 16.166 22.88 1 20.17 ? C8 NAG 201 A 1 HETATM 9 N N2 NAG . . . B 2 26.52 18.406 23.633 1 17.94 ? N2 NAG 201 A 1 HETATM 10 O O3 NAG . . . B 2 25.502 19.49 26.189 1 23.23 ? O3 NAG 201 A 1 HETATM 11 O O4 NAG . . . B 2 25.946 22.383 26.465 1 25.89 ? O4 NAG 201 A 1 HETATM 12 O O5 NAG . . . B 2 28.679 21.252 24.304 1 18 ? O5 NAG 201 A 1 HETATM 13 O O6 NAG . . . B 2 29.273 22.878 26.489 1 27.72 ? O6 NAG 201 A 1 HETATM 14 O O7 NAG . . . B 2 27.525 16.602 24.568 1 21.64 ? O7 NAG 201 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 231 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #