data_4NOF
#
_model_server_result.job_id            7PLes0wy66MyoGC78L62iQ 
_model_server_result.datetime_utc      '2025-02-26 19:53:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4nof 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":302}' 
#
_entry.id    4NOF 
#
_exptl.entry_id    4NOF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          105.96 
_cell.angle_gamma         90 
_cell.entry_id            4NOF 
_cell.length_a            101.388 
_cell.length_b            35.365 
_cell.length_c            73.238 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4NOF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,F 1 1 
B,D,E,G 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 25 A CYS 152 1_555 A SG CYS 93 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? 
disulf ? disulf2 A SG CYS 39 A CYS 166 1_555 A SG CYS 46 A CYS 173 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf3 B SG CYS 25 B CYS 152 1_555 B SG CYS 93 B CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? 
disulf ? disulf4 B SG CYS 39 B CYS 166 1_555 B SG CYS 46 B CYS 173 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.031 ? 
covale ? covale1 A ND2 ASN 20 A ASN 147 1_555 C C1 NAG . A NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? 
covale ? covale2 B ND2 ASN 20 B ASN 147 1_555 D C1 NAG . B NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     4NOF 
_atom_sites.fract_transf_matrix[1][1]    0.009863 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002821 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.028277 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014201 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAG A 1 301 301 NAG NAG . 
D 2 NAG B 1 301 301 NAG NAG . 
E 3 GOL B 1 302 1 GOL GOL . 
F 4 HOH A 1 401 3 HOH HOH . 
F 4 HOH A 2 402 6 HOH HOH . 
F 4 HOH A 3 403 7 HOH HOH . 
F 4 HOH A 4 404 11 HOH HOH . 
F 4 HOH A 5 405 12 HOH HOH . 
F 4 HOH A 6 406 15 HOH HOH . 
F 4 HOH A 7 407 16 HOH HOH . 
F 4 HOH A 8 408 17 HOH HOH . 
F 4 HOH A 9 409 18 HOH HOH . 
F 4 HOH A 10 410 20 HOH HOH . 
F 4 HOH A 11 411 21 HOH HOH . 
F 4 HOH A 12 412 22 HOH HOH . 
F 4 HOH A 13 413 25 HOH HOH . 
F 4 HOH A 14 414 28 HOH HOH . 
F 4 HOH A 15 415 29 HOH HOH . 
F 4 HOH A 16 416 30 HOH HOH . 
F 4 HOH A 17 417 31 HOH HOH . 
F 4 HOH A 18 418 32 HOH HOH . 
F 4 HOH A 19 419 35 HOH HOH . 
F 4 HOH A 20 420 37 HOH HOH . 
F 4 HOH A 21 421 38 HOH HOH . 
F 4 HOH A 22 422 41 HOH HOH . 
F 4 HOH A 23 423 42 HOH HOH . 
F 4 HOH A 24 424 45 HOH HOH . 
F 4 HOH A 25 425 47 HOH HOH . 
F 4 HOH A 26 426 49 HOH HOH . 
F 4 HOH A 27 427 50 HOH HOH . 
F 4 HOH A 28 428 51 HOH HOH . 
F 4 HOH A 29 429 53 HOH HOH . 
F 4 HOH A 30 430 54 HOH HOH . 
F 4 HOH A 31 431 56 HOH HOH . 
F 4 HOH A 32 432 59 HOH HOH . 
F 4 HOH A 33 433 61 HOH HOH . 
F 4 HOH A 34 434 62 HOH HOH . 
F 4 HOH A 35 435 69 HOH HOH . 
F 4 HOH A 36 436 73 HOH HOH . 
F 4 HOH A 37 437 76 HOH HOH . 
F 4 HOH A 38 438 77 HOH HOH . 
F 4 HOH A 39 439 81 HOH HOH . 
F 4 HOH A 40 440 83 HOH HOH . 
F 4 HOH A 41 441 86 HOH HOH . 
F 4 HOH A 42 442 89 HOH HOH . 
F 4 HOH A 43 443 90 HOH HOH . 
F 4 HOH A 44 444 99 HOH HOH . 
F 4 HOH A 45 445 100 HOH HOH . 
F 4 HOH A 46 446 101 HOH HOH . 
F 4 HOH A 47 447 102 HOH HOH . 
F 4 HOH A 48 448 104 HOH HOH . 
F 4 HOH A 49 449 108 HOH HOH . 
F 4 HOH A 50 450 109 HOH HOH . 
F 4 HOH A 51 451 110 HOH HOH . 
F 4 HOH A 52 452 111 HOH HOH . 
F 4 HOH A 53 453 113 HOH HOH . 
F 4 HOH A 54 454 114 HOH HOH . 
F 4 HOH A 55 455 115 HOH HOH . 
F 4 HOH A 56 456 116 HOH HOH . 
F 4 HOH A 57 457 117 HOH HOH . 
F 4 HOH A 58 458 118 HOH HOH . 
F 4 HOH A 59 459 119 HOH HOH . 
F 4 HOH A 60 460 122 HOH HOH . 
F 4 HOH A 61 461 124 HOH HOH . 
F 4 HOH A 62 462 125 HOH HOH . 
F 4 HOH A 63 463 128 HOH HOH . 
F 4 HOH A 64 464 131 HOH HOH . 
F 4 HOH A 65 465 132 HOH HOH . 
F 4 HOH A 66 466 133 HOH HOH . 
F 4 HOH A 67 467 135 HOH HOH . 
F 4 HOH A 68 468 137 HOH HOH . 
F 4 HOH A 69 469 138 HOH HOH . 
F 4 HOH A 70 470 143 HOH HOH . 
F 4 HOH A 71 471 144 HOH HOH . 
F 4 HOH A 72 472 146 HOH HOH . 
G 4 HOH B 1 401 1 HOH HOH . 
G 4 HOH B 2 402 2 HOH HOH . 
G 4 HOH B 3 403 4 HOH HOH . 
G 4 HOH B 4 404 5 HOH HOH . 
G 4 HOH B 5 405 8 HOH HOH . 
G 4 HOH B 6 406 9 HOH HOH . 
G 4 HOH B 7 407 10 HOH HOH . 
G 4 HOH B 8 408 13 HOH HOH . 
G 4 HOH B 9 409 14 HOH HOH . 
G 4 HOH B 10 410 19 HOH HOH . 
G 4 HOH B 11 411 23 HOH HOH . 
G 4 HOH B 12 412 24 HOH HOH . 
G 4 HOH B 13 413 26 HOH HOH . 
G 4 HOH B 14 414 27 HOH HOH . 
G 4 HOH B 15 415 33 HOH HOH . 
G 4 HOH B 16 416 34 HOH HOH . 
G 4 HOH B 17 417 36 HOH HOH . 
G 4 HOH B 18 418 39 HOH HOH . 
G 4 HOH B 19 419 40 HOH HOH . 
G 4 HOH B 20 420 43 HOH HOH . 
G 4 HOH B 21 421 44 HOH HOH . 
G 4 HOH B 22 422 46 HOH HOH . 
G 4 HOH B 23 423 48 HOH HOH . 
G 4 HOH B 24 424 52 HOH HOH . 
G 4 HOH B 25 425 55 HOH HOH . 
G 4 HOH B 26 426 57 HOH HOH . 
G 4 HOH B 27 427 58 HOH HOH . 
G 4 HOH B 28 428 60 HOH HOH . 
G 4 HOH B 29 429 63 HOH HOH . 
G 4 HOH B 30 430 64 HOH HOH . 
G 4 HOH B 31 431 65 HOH HOH . 
G 4 HOH B 32 432 66 HOH HOH . 
G 4 HOH B 33 433 67 HOH HOH . 
G 4 HOH B 34 434 68 HOH HOH . 
G 4 HOH B 35 435 70 HOH HOH . 
G 4 HOH B 36 436 71 HOH HOH . 
G 4 HOH B 37 437 72 HOH HOH . 
G 4 HOH B 38 438 74 HOH HOH . 
G 4 HOH B 39 439 75 HOH HOH . 
G 4 HOH B 40 440 78 HOH HOH . 
G 4 HOH B 41 441 79 HOH HOH . 
G 4 HOH B 42 442 80 HOH HOH . 
G 4 HOH B 43 443 82 HOH HOH . 
G 4 HOH B 44 444 84 HOH HOH . 
G 4 HOH B 45 445 85 HOH HOH . 
G 4 HOH B 46 446 87 HOH HOH . 
G 4 HOH B 47 447 88 HOH HOH . 
G 4 HOH B 48 448 91 HOH HOH . 
G 4 HOH B 49 449 92 HOH HOH . 
G 4 HOH B 50 450 93 HOH HOH . 
G 4 HOH B 51 451 94 HOH HOH . 
G 4 HOH B 52 452 95 HOH HOH . 
G 4 HOH B 53 453 96 HOH HOH . 
G 4 HOH B 54 454 97 HOH HOH . 
G 4 HOH B 55 455 98 HOH HOH . 
G 4 HOH B 56 456 103 HOH HOH . 
G 4 HOH B 57 457 105 HOH HOH . 
G 4 HOH B 58 458 106 HOH HOH . 
G 4 HOH B 59 459 107 HOH HOH . 
G 4 HOH B 60 460 112 HOH HOH . 
G 4 HOH B 61 461 120 HOH HOH . 
G 4 HOH B 62 462 121 HOH HOH . 
G 4 HOH B 63 463 123 HOH HOH . 
G 4 HOH B 64 464 126 HOH HOH . 
G 4 HOH B 65 465 127 HOH HOH . 
G 4 HOH B 66 466 129 HOH HOH . 
G 4 HOH B 67 467 130 HOH HOH . 
G 4 HOH B 68 468 134 HOH HOH . 
G 4 HOH B 69 469 136 HOH HOH . 
G 4 HOH B 70 470 139 HOH HOH . 
G 4 HOH B 71 471 140 HOH HOH . 
G 4 HOH B 72 472 141 HOH HOH . 
G 4 HOH B 73 473 142 HOH HOH . 
G 4 HOH B 74 474 145 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 3 27.058 13.705 -9.322 1 46.14 ? C1 GOL 302 B 1 
HETATM 2 O O1 GOL . . . E 3 28.119 14.67 -9.322 1 47.38 ? O1 GOL 302 B 1 
HETATM 3 C C2 GOL . . . E 3 26.731 13.398 -10.781 1 51.52 ? C2 GOL 302 B 1 
HETATM 4 O O2 GOL . . . E 3 26.026 12.158 -10.924 1 52.32 ? O2 GOL 302 B 1 
HETATM 5 C C3 GOL . . . E 3 25.851 14.497 -11.339 1 53.25 ? C3 GOL 302 B 1 
HETATM 6 O O3 GOL . . . E 3 24.485 14.057 -11.304 1 55.92 ? O3 GOL 302 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           288 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#