data_4NP7
#
_model_server_result.job_id            1nexccx9wMb-T-F50JN54Q 
_model_server_result.datetime_utc      '2024-11-13 00:25:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4np7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":403}' 
#
_entry.id    4NP7 
#
_exptl.entry_id    4NP7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              170.167 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'O,O-DIETHYL HYDROGEN THIOPHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4NP7 
_cell.length_a            109.134 
_cell.length_b            109.134 
_cell.length_c            63.428 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4NP7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_554 x-y,-y,-z-1/3 1 0 0 0 -1 0 0 0 -1 0 0 -21.142667 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ILE 136 A ILE 168 1_555 A N KCX 137 A KCX 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale2 A C KCX 137 A KCX 169 1_555 A N VAL 138 A VAL 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
metalc ? metalc1 A NE2 HIS 25 A HIS 57 1_555 B FE FE2 . A FE2 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? 
metalc ? metalc2 A OQ1 KCX 137 A KCX 169 1_555 B FE FE2 . A FE2 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? 
metalc ? metalc3 A OQ1 KCX 137 A KCX 169 1_555 C CO CO . A CO 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.74 ? 
metalc ? metalc4 A ND1 HIS 169 A HIS 201 1_555 C CO CO . A CO 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? 
metalc ? metalc5 A OD1 ASP 269 A ASP 301 1_555 B FE FE2 . A FE2 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? 
metalc ? metalc6 B FE FE2 . A FE2 401 1_555 D O4 DPJ . A DPJ 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.873 ? 
metalc ? metalc7 C CO CO . A CO 402 1_555 D O4 DPJ . A DPJ 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? 
#
_chem_comp.formula           'C4 H11 O3 P S' 
_chem_comp.formula_weight    170.167 
_chem_comp.id                DPJ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'O,O-DIETHYL HYDROGEN THIOPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O4 P2 DPJ sing 83 n n 
O4 HO4 DPJ sing 84 n n 
P2 O3 DPJ sing 85 n n 
P2 S1 DPJ doub 86 n n 
P2 O5 DPJ sing 87 n n 
O3 C7 DPJ sing 88 n n 
C7 C9 DPJ sing 89 n n 
C7 H71 DPJ sing 90 n n 
C7 H72 DPJ sing 91 n n 
C9 H91 DPJ sing 92 n n 
C9 H92 DPJ sing 93 n n 
C9 H93 DPJ sing 94 n n 
O5 C6 DPJ sing 95 n n 
C6 C8 DPJ sing 96 n n 
C6 H61 DPJ sing 97 n n 
C6 H62 DPJ sing 98 n n 
C8 H81 DPJ sing 99 n n 
C8 H82 DPJ sing 100 n n 
C8 H83 DPJ sing 101 n n 
#
_atom_sites.entry_id                     4NP7 
_atom_sites.fract_transf_matrix[1][1]    0.009163 
_atom_sites.fract_transf_matrix[1][2]    0.00529 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010581 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015766 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FE2 A 1 401 800 FE2 FE2 . 
C 3 CO A 1 402 801 CO CO . 
D 4 DPJ A 1 403 1 DPJ DPJ . 
E 5 EDO A 1 404 701 EDO EDO . 
F 6 HOH A 1 501 1 HOH HOH . 
F 6 HOH A 2 502 2 HOH HOH . 
F 6 HOH A 3 503 3 HOH HOH . 
F 6 HOH A 4 504 4 HOH HOH . 
F 6 HOH A 5 505 5 HOH HOH . 
F 6 HOH A 6 506 6 HOH HOH . 
F 6 HOH A 7 507 7 HOH HOH . 
F 6 HOH A 8 508 8 HOH HOH . 
F 6 HOH A 9 509 9 HOH HOH . 
F 6 HOH A 10 510 10 HOH HOH . 
F 6 HOH A 11 511 11 HOH HOH . 
F 6 HOH A 12 512 12 HOH HOH . 
F 6 HOH A 13 513 13 HOH HOH . 
F 6 HOH A 14 514 14 HOH HOH . 
F 6 HOH A 15 515 15 HOH HOH . 
F 6 HOH A 16 516 16 HOH HOH . 
F 6 HOH A 17 517 17 HOH HOH . 
F 6 HOH A 18 518 18 HOH HOH . 
F 6 HOH A 19 519 19 HOH HOH . 
F 6 HOH A 20 520 20 HOH HOH . 
F 6 HOH A 21 521 21 HOH HOH . 
F 6 HOH A 22 522 22 HOH HOH . 
F 6 HOH A 23 523 23 HOH HOH . 
F 6 HOH A 24 524 24 HOH HOH . 
F 6 HOH A 25 525 25 HOH HOH . 
F 6 HOH A 26 526 26 HOH HOH . 
F 6 HOH A 27 527 27 HOH HOH . 
F 6 HOH A 28 528 28 HOH HOH . 
F 6 HOH A 29 529 29 HOH HOH . 
F 6 HOH A 30 530 30 HOH HOH . 
F 6 HOH A 31 531 31 HOH HOH . 
F 6 HOH A 32 532 32 HOH HOH . 
F 6 HOH A 33 533 33 HOH HOH . 
F 6 HOH A 34 534 34 HOH HOH . 
F 6 HOH A 35 535 35 HOH HOH . 
F 6 HOH A 36 536 36 HOH HOH . 
F 6 HOH A 37 537 37 HOH HOH . 
F 6 HOH A 38 538 38 HOH HOH . 
F 6 HOH A 39 539 39 HOH HOH . 
F 6 HOH A 40 540 40 HOH HOH . 
F 6 HOH A 41 541 41 HOH HOH . 
F 6 HOH A 42 542 42 HOH HOH . 
F 6 HOH A 43 543 43 HOH HOH . 
F 6 HOH A 44 544 44 HOH HOH . 
F 6 HOH A 45 545 45 HOH HOH . 
F 6 HOH A 46 546 46 HOH HOH . 
F 6 HOH A 47 547 47 HOH HOH . 
F 6 HOH A 48 548 48 HOH HOH . 
F 6 HOH A 49 549 49 HOH HOH . 
F 6 HOH A 50 550 50 HOH HOH . 
F 6 HOH A 51 551 51 HOH HOH . 
F 6 HOH A 52 552 52 HOH HOH . 
F 6 HOH A 53 553 53 HOH HOH . 
F 6 HOH A 54 554 54 HOH HOH . 
F 6 HOH A 55 555 55 HOH HOH . 
F 6 HOH A 56 556 56 HOH HOH . 
F 6 HOH A 57 557 57 HOH HOH . 
F 6 HOH A 58 558 58 HOH HOH . 
F 6 HOH A 59 559 59 HOH HOH . 
F 6 HOH A 60 560 60 HOH HOH . 
F 6 HOH A 61 561 61 HOH HOH . 
F 6 HOH A 62 562 62 HOH HOH . 
F 6 HOH A 63 563 63 HOH HOH . 
F 6 HOH A 64 564 64 HOH HOH . 
F 6 HOH A 65 565 65 HOH HOH . 
F 6 HOH A 66 566 66 HOH HOH . 
F 6 HOH A 67 567 67 HOH HOH . 
F 6 HOH A 68 568 68 HOH HOH . 
F 6 HOH A 69 569 69 HOH HOH . 
F 6 HOH A 70 570 70 HOH HOH . 
F 6 HOH A 71 571 71 HOH HOH . 
F 6 HOH A 72 572 72 HOH HOH . 
F 6 HOH A 73 573 73 HOH HOH . 
F 6 HOH A 74 574 74 HOH HOH . 
F 6 HOH A 75 575 76 HOH HOH . 
F 6 HOH A 76 576 77 HOH HOH . 
F 6 HOH A 77 577 78 HOH HOH . 
F 6 HOH A 78 578 79 HOH HOH . 
F 6 HOH A 79 579 80 HOH HOH . 
F 6 HOH A 80 580 81 HOH HOH . 
F 6 HOH A 81 581 82 HOH HOH . 
F 6 HOH A 82 582 83 HOH HOH . 
F 6 HOH A 83 583 84 HOH HOH . 
F 6 HOH A 84 584 85 HOH HOH . 
F 6 HOH A 85 585 87 HOH HOH . 
F 6 HOH A 86 586 88 HOH HOH . 
F 6 HOH A 87 587 89 HOH HOH . 
F 6 HOH A 88 588 90 HOH HOH . 
F 6 HOH A 89 589 91 HOH HOH . 
F 6 HOH A 90 590 92 HOH HOH . 
F 6 HOH A 91 591 93 HOH HOH . 
F 6 HOH A 92 592 94 HOH HOH . 
F 6 HOH A 93 593 95 HOH HOH . 
F 6 HOH A 94 594 96 HOH HOH . 
F 6 HOH A 95 595 97 HOH HOH . 
F 6 HOH A 96 596 98 HOH HOH . 
F 6 HOH A 97 597 99 HOH HOH . 
F 6 HOH A 98 598 100 HOH HOH . 
F 6 HOH A 99 599 101 HOH HOH . 
F 6 HOH A 100 600 102 HOH HOH . 
F 6 HOH A 101 601 103 HOH HOH . 
F 6 HOH A 102 602 104 HOH HOH . 
F 6 HOH A 103 603 105 HOH HOH . 
F 6 HOH A 104 604 106 HOH HOH . 
F 6 HOH A 105 605 107 HOH HOH . 
F 6 HOH A 106 606 108 HOH HOH . 
F 6 HOH A 107 607 109 HOH HOH . 
F 6 HOH A 108 608 110 HOH HOH . 
F 6 HOH A 109 609 111 HOH HOH . 
F 6 HOH A 110 610 112 HOH HOH . 
F 6 HOH A 111 611 113 HOH HOH . 
F 6 HOH A 112 612 115 HOH HOH . 
F 6 HOH A 113 613 116 HOH HOH . 
F 6 HOH A 114 614 117 HOH HOH . 
F 6 HOH A 115 615 119 HOH HOH . 
F 6 HOH A 116 616 120 HOH HOH . 
F 6 HOH A 117 617 121 HOH HOH . 
F 6 HOH A 118 618 122 HOH HOH . 
F 6 HOH A 119 619 123 HOH HOH . 
F 6 HOH A 120 620 124 HOH HOH . 
F 6 HOH A 121 621 125 HOH HOH . 
F 6 HOH A 122 622 126 HOH HOH . 
F 6 HOH A 123 623 127 HOH HOH . 
F 6 HOH A 124 624 128 HOH HOH . 
F 6 HOH A 125 625 129 HOH HOH . 
F 6 HOH A 126 626 130 HOH HOH . 
F 6 HOH A 127 627 132 HOH HOH . 
F 6 HOH A 128 628 133 HOH HOH . 
F 6 HOH A 129 629 135 HOH HOH . 
F 6 HOH A 130 630 136 HOH HOH . 
F 6 HOH A 131 631 137 HOH HOH . 
F 6 HOH A 132 632 139 HOH HOH . 
F 6 HOH A 133 633 141 HOH HOH . 
F 6 HOH A 134 634 143 HOH HOH . 
F 6 HOH A 135 635 144 HOH HOH . 
F 6 HOH A 136 636 145 HOH HOH . 
F 6 HOH A 137 637 147 HOH HOH . 
F 6 HOH A 138 638 148 HOH HOH . 
F 6 HOH A 139 639 149 HOH HOH . 
F 6 HOH A 140 640 150 HOH HOH . 
F 6 HOH A 141 641 151 HOH HOH . 
F 6 HOH A 142 642 152 HOH HOH . 
F 6 HOH A 143 643 156 HOH HOH . 
F 6 HOH A 144 644 157 HOH HOH . 
F 6 HOH A 145 645 159 HOH HOH . 
F 6 HOH A 146 646 160 HOH HOH . 
F 6 HOH A 147 647 162 HOH HOH . 
F 6 HOH A 148 648 163 HOH HOH . 
F 6 HOH A 149 649 164 HOH HOH . 
F 6 HOH A 150 650 165 HOH HOH . 
F 6 HOH A 151 651 166 HOH HOH . 
F 6 HOH A 152 652 167 HOH HOH . 
F 6 HOH A 153 653 169 HOH HOH . 
F 6 HOH A 154 654 170 HOH HOH . 
F 6 HOH A 155 655 171 HOH HOH . 
F 6 HOH A 156 656 172 HOH HOH . 
F 6 HOH A 157 657 174 HOH HOH . 
F 6 HOH A 158 658 175 HOH HOH . 
F 6 HOH A 159 659 176 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O4 DPJ . . . D 4 32.677 16.303 -7.585 0.6 20.79 ? O4 DPJ 403 A 1 
HETATM 2 P P2 DPJ . . . D 4 32.319 15.455 -8.891 0.6 29.98 ? P2 DPJ 403 A 1 
HETATM 3 S S1 DPJ . . . D 4 30.88 14.369 -8.348 0.6 27.31 ? S1 DPJ 403 A 1 
HETATM 4 O O3 DPJ . . . D 4 31.726 16.22 -10.198 0.6 29.4 ? O3 DPJ 403 A 1 
HETATM 5 C C7 DPJ . . . D 4 32.405 17.07 -11.13 0.6 30.11 ? C7 DPJ 403 A 1 
HETATM 6 C C9 DPJ . . . D 4 31.482 17.36 -12.287 0.6 31.06 ? C9 DPJ 403 A 1 
HETATM 7 O O5 DPJ . . . D 4 33.513 14.434 -9.264 0.6 27.74 ? O5 DPJ 403 A 1 
HETATM 8 C C6 DPJ . . . D 4 33.743 13.897 -10.524 0.6 24.04 ? C6 DPJ 403 A 1 
HETATM 9 C C8 DPJ . . . D 4 35.231 14.055 -10.64 0.6 24.29 ? C8 DPJ 403 A 1 
#
_model_server_stats.io_time_ms              63 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           9 
#