data_4NPT # _model_server_result.job_id ZPagjmERF_QP1ZuUAD869Q _model_server_result.datetime_utc '2025-02-01 02:00:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4npt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4NPT # _exptl.entry_id 4NPT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 547.664 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YL(1S,2R)-3-[[(4-AMINOPHENYL)SULFONYL](ISOBUTYL)AMINO]-1-BENZYL-2-HYDROXYPROPYLCARBAMATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4NPT _cell.length_a 46.804 _cell.length_b 46.804 _cell.length_c 100.627 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4NPT _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 -y,-x,-z+1/2 0 -1 0 -1 0 0 0 0 -1 0 0 50.3135 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H37 N3 O7 S' _chem_comp.formula_weight 547.664 _chem_comp.id 017 _chem_comp.mon_nstd_flag . _chem_comp.name (3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YL(1S,2R)-3-[[(4-AMINOPHENYL)SULFONYL](ISOBUTYL)AMINO]-1-BENZYL-2-HYDROXYPROPYLCARBAMATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Darunavir;TMC114;UIC-94017 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 017 sing 1 n n N1 H11 017 sing 2 n n N1 H12 017 sing 3 n n C2 C3 017 doub 4 n y C2 C7 017 sing 5 n y C3 C4 017 sing 6 n y C3 H3 017 sing 7 n n C4 C5 017 doub 8 n y C4 H4 017 sing 9 n n C5 C6 017 sing 10 n y C5 S8 017 sing 11 n n C6 C7 017 doub 12 n y C6 H6 017 sing 13 n n C7 H7 017 sing 14 n n S8 O9 017 doub 15 n n S8 O10 017 doub 16 n n S8 N11 017 sing 17 n n N11 C12 017 sing 18 n n N11 C16 017 sing 19 n n C12 C13 017 sing 20 n n C12 H121 017 sing 21 n n C12 H122 017 sing 22 n n C13 C14 017 sing 23 n n C13 C15 017 sing 24 n n C13 H13 017 sing 25 n n C14 H141 017 sing 26 n n C14 H142 017 sing 27 n n C14 H143 017 sing 28 n n C15 H151 017 sing 29 n n C15 H152 017 sing 30 n n C15 H153 017 sing 31 n n C16 C17 017 sing 32 n n C16 H161 017 sing 33 n n C16 H162 017 sing 34 n n C17 O18 017 sing 35 n n C17 C19 017 sing 36 n n C17 H17 017 sing 37 n n O18 H18 017 sing 38 n n C19 N20 017 sing 39 n n C19 C32 017 sing 40 n n C19 H19 017 sing 41 n n N20 C21 017 sing 42 n n N20 H20 017 sing 43 n n C21 O22 017 doub 44 n n C21 O23 017 sing 45 n n O23 C24 017 sing 46 n n C24 C25 017 sing 47 n n C24 C31 017 sing 48 n n C24 H24 017 sing 49 n n C25 O26 017 sing 50 n n C25 H251 017 sing 51 n n C25 H252 017 sing 52 n n O26 C27 017 sing 53 n n C27 O28 017 sing 54 n n C27 C31 017 sing 55 n n C27 H27 017 sing 56 n n O28 C29 017 sing 57 n n C29 C30 017 sing 58 n n C29 H291 017 sing 59 n n C29 H292 017 sing 60 n n C30 C31 017 sing 61 n n C30 H301 017 sing 62 n n C30 H302 017 sing 63 n n C31 H31 017 sing 64 n n C32 C38 017 sing 65 n n C32 H321 017 sing 66 n n C32 H322 017 sing 67 n n C33 C34 017 doub 68 n y C33 C38 017 sing 69 n y C33 H33 017 sing 70 n n C34 C35 017 sing 71 n y C34 H34 017 sing 72 n n C35 C36 017 doub 73 n y C35 H35 017 sing 74 n n C36 C37 017 sing 75 n y C36 H36 017 sing 76 n n C37 C38 017 doub 77 n y C37 H37 017 sing 78 n n # _atom_sites.entry_id 4NPT _atom_sites.fract_transf_matrix[1][1] 0.021366 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021366 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009938 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 017 A 1 401 401 017 017 . C 3 GOL A 1 402 801 GOL GOL . D 4 HOH A 1 501 1 HOH HOH . D 4 HOH A 2 502 2 HOH HOH . D 4 HOH A 3 503 3 HOH HOH . D 4 HOH A 4 504 4 HOH HOH . D 4 HOH A 5 505 5 HOH HOH . D 4 HOH A 6 506 6 HOH HOH . D 4 HOH A 7 507 7 HOH HOH . D 4 HOH A 8 508 8 HOH HOH . D 4 HOH A 9 509 9 HOH HOH . D 4 HOH A 10 510 10 HOH HOH . D 4 HOH A 11 511 11 HOH HOH . D 4 HOH A 12 512 12 HOH HOH . D 4 HOH A 13 513 13 HOH HOH . D 4 HOH A 14 514 14 HOH HOH . D 4 HOH A 15 515 15 HOH HOH . D 4 HOH A 16 516 16 HOH HOH . D 4 HOH A 17 517 17 HOH HOH . D 4 HOH A 18 518 18 HOH HOH . D 4 HOH A 19 519 19 HOH HOH . D 4 HOH A 20 520 20 HOH HOH . D 4 HOH A 21 521 21 HOH HOH . D 4 HOH A 22 522 22 HOH HOH . D 4 HOH A 23 523 23 HOH HOH . D 4 HOH A 24 524 24 HOH HOH . D 4 HOH A 25 525 25 HOH HOH . D 4 HOH A 26 526 26 HOH HOH . D 4 HOH A 27 527 27 HOH HOH . D 4 HOH A 28 528 28 HOH HOH . D 4 HOH A 29 529 29 HOH HOH . D 4 HOH A 30 530 30 HOH HOH . D 4 HOH A 31 531 31 HOH HOH . D 4 HOH A 32 532 32 HOH HOH . D 4 HOH A 33 533 33 HOH HOH . D 4 HOH A 34 534 34 HOH HOH . D 4 HOH A 35 535 35 HOH HOH . D 4 HOH A 36 536 36 HOH HOH . D 4 HOH A 37 537 37 HOH HOH . D 4 HOH A 38 538 38 HOH HOH . D 4 HOH A 39 539 39 HOH HOH . D 4 HOH A 40 540 40 HOH HOH . D 4 HOH A 41 541 41 HOH HOH . D 4 HOH A 42 542 42 HOH HOH . D 4 HOH A 43 543 43 HOH HOH . D 4 HOH A 44 544 44 HOH HOH . D 4 HOH A 45 545 45 HOH HOH . D 4 HOH A 46 546 46 HOH HOH . D 4 HOH A 47 547 47 HOH HOH . D 4 HOH A 48 548 48 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 017 . . . B 2 4.435 -10.718 23.602 1 37.82 ? N1 017 401 A 1 HETATM 2 C C2 017 . . . B 2 5.429 -9.903 23.097 1 38.59 ? C2 017 401 A 1 HETATM 3 C C3 017 . . . B 2 6.238 -9.105 23.947 1 33.63 ? C3 017 401 A 1 HETATM 4 C C4 017 . . . B 2 7.209 -8.304 23.363 1 32.9 ? C4 017 401 A 1 HETATM 5 C C5 017 . . . B 2 7.404 -8.285 21.98 1 35.32 ? C5 017 401 A 1 HETATM 6 C C6 017 . . . B 2 6.624 -9.082 21.15 1 36.35 ? C6 017 401 A 1 HETATM 7 C C7 017 . . . B 2 5.637 -9.884 21.712 1 35.01 ? C7 017 401 A 1 HETATM 8 S S8 017 . . . B 2 8.597 -7.33 21.355 1 37.95 ? S8 017 401 A 1 HETATM 9 O O9 017 . . . B 2 8.199 -6.873 20.028 1 39.37 ? O9 017 401 A 1 HETATM 10 O O10 017 . . . B 2 8.814 -6.309 22.275 1 35 ? O10 017 401 A 1 HETATM 11 N N11 017 . . . B 2 9.812 -8.455 21.293 1 43.62 ? N11 017 401 A 1 HETATM 12 C C12 017 . . . B 2 10.04 -9.38 20.15 1 49.18 ? C12 017 401 A 1 HETATM 13 C C13 017 . . . B 2 10.896 -8.998 18.937 1 54.39 ? C13 017 401 A 1 HETATM 14 C C14 017 . . . B 2 12.15 -8.209 19.281 1 55.06 ? C14 017 401 A 1 HETATM 15 C C15 017 . . . B 2 11.247 -10.268 18.126 1 48.06 ? C15 017 401 A 1 HETATM 16 C C16 017 . . . B 2 10.567 -8.923 22.531 1 36.3 ? C16 017 401 A 1 HETATM 17 C C17 017 . . . B 2 12.048 -8.513 22.666 1 31.66 ? C17 017 401 A 1 HETATM 18 O O18 017 . . . B 2 11.976 -7.069 22.629 1 33.64 ? O18 017 401 A 1 HETATM 19 C C19 017 . . . B 2 12.68 -9.009 24.001 1 30.02 ? C19 017 401 A 1 HETATM 20 N N20 017 . . . B 2 14.003 -8.372 24.067 1 24.97 ? N20 017 401 A 1 HETATM 21 C C21 017 . . . B 2 15.074 -8.979 23.618 1 28.21 ? C21 017 401 A 1 HETATM 22 O O22 017 . . . B 2 16.208 -8.525 23.581 1 23.79 ? O22 017 401 A 1 HETATM 23 O O23 017 . . . B 2 14.941 -10.301 23.176 1 24.12 ? O23 017 401 A 1 HETATM 24 C C24 017 . . . B 2 16.138 -10.958 22.717 1 26.07 ? C24 017 401 A 1 HETATM 25 C C25 017 . . . B 2 15.86 -12.452 22.818 1 28.73 ? C25 017 401 A 1 HETATM 26 O O26 017 . . . B 2 16.646 -13.092 21.803 1 29.22 ? O26 017 401 A 1 HETATM 27 C C27 017 . . . B 2 16.677 -12.193 20.648 1 25.18 ? C27 017 401 A 1 HETATM 28 O O28 017 . . . B 2 15.596 -12.47 19.732 1 27.26 ? O28 017 401 A 1 HETATM 29 C C29 017 . . . B 2 14.664 -11.43 19.918 1 23.82 ? C29 017 401 A 1 HETATM 30 C C30 017 . . . B 2 15.389 -10.158 20.395 1 23.87 ? C30 017 401 A 1 HETATM 31 C C31 017 . . . B 2 16.498 -10.779 21.238 1 23.62 ? C31 017 401 A 1 HETATM 32 C C32 017 . . . B 2 11.859 -8.548 25.24 1 31.23 ? C32 017 401 A 1 HETATM 33 C C33 017 . . . B 2 12.367 -8.363 27.721 1 32.16 ? C33 017 401 A 1 HETATM 34 C C34 017 . . . B 2 12.796 -8.932 28.902 1 34.22 ? C34 017 401 A 1 HETATM 35 C C35 017 . . . B 2 13.158 -10.261 28.954 1 32.78 ? C35 017 401 A 1 HETATM 36 C C36 017 . . . B 2 13.103 -11.058 27.833 1 35.34 ? C36 017 401 A 1 HETATM 37 C C37 017 . . . B 2 12.681 -10.479 26.628 1 35.6 ? C37 017 401 A 1 HETATM 38 C C38 017 . . . B 2 12.331 -9.132 26.564 1 33.66 ? C38 017 401 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 38 #