data_4NR1
#
_model_server_result.job_id            yXXKhacPdAkRJx1xurBCSQ 
_model_server_result.datetime_utc      '2024-11-25 12:24:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4nr1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":502}' 
#
_entry.id    4NR1 
#
_exptl.entry_id    4NR1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              147.086 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-OXALYLGLYCINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4NR1 
_cell.length_a            86.37 
_cell.length_b            86.37 
_cell.length_c            148.72 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4NR1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C VAL 15 S VAL 802 1_555 B N DYL 16 S DYL 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale2 B C DYL 16 S DYL 803 1_555 B N ALA 17 S ALA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
metalc ? metalc1 A NE2 HIS 202 A HIS 199 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? 
metalc ? metalc2 A OD2 ASP 204 A ASP 201 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
metalc ? metalc3 A NE2 HIS 282 A HIS 279 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? 
metalc ? metalc4 C ZN ZN . A ZN 501 1_555 D O2' OGA . A OGA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? 
metalc ? metalc5 C ZN ZN . A ZN 501 1_555 D O2 OGA . A OGA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? 
#
_chem_comp.formula           'C4 H5 N O5' 
_chem_comp.formula_weight    147.086 
_chem_comp.id                OGA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-OXALYLGLYCINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 OGA sing 253 n n 
C1 O1 OGA doub 254 n n 
C1 O2 OGA sing 255 n n 
C2 O2' OGA doub 256 n n 
C2 N1 OGA sing 257 n n 
C4 C5 OGA sing 258 n n 
C4 N1 OGA sing 259 n n 
C4 H4C1 OGA sing 260 n n 
C4 H4C2 OGA sing 261 n n 
C5 O3 OGA sing 262 n n 
C5 O4 OGA doub 263 n n 
O2 H2 OGA sing 264 n n 
O3 H3 OGA sing 265 n n 
N1 H1 OGA sing 266 n n 
#
_atom_sites.entry_id                     4NR1 
_atom_sites.fract_transf_matrix[1][1]    0.011578 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011578 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006724 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 ZN A 1 501 501 ZN ZN . 
D 4 OGA A 1 502 601 OGA OGA . 
E 5 SO4 A 1 503 1 SO4 SO4 . 
F 5 SO4 A 1 504 2 SO4 SO4 . 
G 5 SO4 A 1 505 3 SO4 SO4 . 
H 6 HOH A 1 601 2 HOH HOH . 
H 6 HOH A 2 602 3 HOH HOH . 
H 6 HOH A 3 603 5 HOH HOH . 
H 6 HOH A 4 604 7 HOH HOH . 
H 6 HOH A 5 605 8 HOH HOH . 
H 6 HOH A 6 606 9 HOH HOH . 
H 6 HOH A 7 607 10 HOH HOH . 
H 6 HOH A 8 608 11 HOH HOH . 
H 6 HOH A 9 609 12 HOH HOH . 
H 6 HOH A 10 610 13 HOH HOH . 
H 6 HOH A 11 611 14 HOH HOH . 
H 6 HOH A 12 612 15 HOH HOH . 
H 6 HOH A 13 613 16 HOH HOH . 
H 6 HOH A 14 614 17 HOH HOH . 
H 6 HOH A 15 615 18 HOH HOH . 
H 6 HOH A 16 616 19 HOH HOH . 
H 6 HOH A 17 617 20 HOH HOH . 
H 6 HOH A 18 618 21 HOH HOH . 
H 6 HOH A 19 619 22 HOH HOH . 
H 6 HOH A 20 620 23 HOH HOH . 
H 6 HOH A 21 621 24 HOH HOH . 
H 6 HOH A 22 622 25 HOH HOH . 
H 6 HOH A 23 623 26 HOH HOH . 
H 6 HOH A 24 624 27 HOH HOH . 
H 6 HOH A 25 625 28 HOH HOH . 
H 6 HOH A 26 626 29 HOH HOH . 
H 6 HOH A 27 627 30 HOH HOH . 
H 6 HOH A 28 628 31 HOH HOH . 
H 6 HOH A 29 629 32 HOH HOH . 
H 6 HOH A 30 630 33 HOH HOH . 
H 6 HOH A 31 631 36 HOH HOH . 
H 6 HOH A 32 632 37 HOH HOH . 
H 6 HOH A 33 633 38 HOH HOH . 
H 6 HOH A 34 634 39 HOH HOH . 
H 6 HOH A 35 635 40 HOH HOH . 
H 6 HOH A 36 636 41 HOH HOH . 
H 6 HOH A 37 637 42 HOH HOH . 
H 6 HOH A 38 638 43 HOH HOH . 
H 6 HOH A 39 639 45 HOH HOH . 
H 6 HOH A 40 640 46 HOH HOH . 
H 6 HOH A 41 641 47 HOH HOH . 
H 6 HOH A 42 642 48 HOH HOH . 
H 6 HOH A 43 643 49 HOH HOH . 
H 6 HOH A 44 644 50 HOH HOH . 
H 6 HOH A 45 645 52 HOH HOH . 
H 6 HOH A 46 646 53 HOH HOH . 
H 6 HOH A 47 647 54 HOH HOH . 
H 6 HOH A 48 648 55 HOH HOH . 
H 6 HOH A 49 649 57 HOH HOH . 
H 6 HOH A 50 650 58 HOH HOH . 
H 6 HOH A 51 651 59 HOH HOH . 
H 6 HOH A 52 652 60 HOH HOH . 
H 6 HOH A 53 653 61 HOH HOH . 
I 6 HOH S 1 901 34 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 OGA . . . D 4 -25.449 22.339 -9.063 1 47.89 ? C1 OGA 502 A 1 
HETATM 2 C C2 OGA . . . D 4 -26.126 21.181 -8.425 1 44.66 ? C2 OGA 502 A 1 
HETATM 3 C C4 OGA . . . D 4 -26.024 18.777 -7.805 1 42.8 ? C4 OGA 502 A 1 
HETATM 4 C C5 OGA . . . D 4 -25.452 17.472 -8.288 1 43.45 ? C5 OGA 502 A 1 
HETATM 5 O O1 OGA . . . D 4 -24.323 22.162 -9.581 1 48.07 ? O1 OGA 502 A 1 
HETATM 6 O O2 OGA . . . D 4 -25.984 23.498 -9.087 1 50.28 ? O2 OGA 502 A 1 
HETATM 7 O O2' OGA . . . D 4 -27.234 21.312 -7.906 1 43.77 ? O2' OGA 502 A 1 
HETATM 8 O O3 OGA . . . D 4 -25.753 16.417 -7.661 1 43.54 ? O3 OGA 502 A 1 
HETATM 9 N N1 OGA . . . D 4 -25.453 19.937 -8.433 1 43.21 ? N1 OGA 502 A 1 
HETATM 10 O O4 OGA . . . D 4 -24.685 17.389 -9.299 1 44.2 ? O4 OGA 502 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           469 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           10 
#