data_4NR1 # _model_server_result.job_id pzK1XIi5PeTr6i26gfLPdQ _model_server_result.datetime_utc '2024-11-25 12:51:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4nr1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":503}' # _entry.id 4NR1 # _exptl.entry_id 4NR1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4NR1 _cell.length_a 86.37 _cell.length_b 86.37 _cell.length_c 148.72 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4NR1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C VAL 15 S VAL 802 1_555 B N DYL 16 S DYL 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 B C DYL 16 S DYL 803 1_555 B N ALA 17 S ALA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? metalc ? metalc1 A NE2 HIS 202 A HIS 199 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc2 A OD2 ASP 204 A ASP 201 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc3 A NE2 HIS 282 A HIS 279 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc4 C ZN ZN . A ZN 501 1_555 D O2' OGA . A OGA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc5 C ZN ZN . A ZN 501 1_555 D O2 OGA . A OGA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 320 n n S O2 SO4 doub 321 n n S O3 SO4 sing 322 n n S O4 SO4 sing 323 n n # _atom_sites.entry_id 4NR1 _atom_sites.fract_transf_matrix[1][1] 0.011578 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011578 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006724 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 501 501 ZN ZN . D 4 OGA A 1 502 601 OGA OGA . E 5 SO4 A 1 503 1 SO4 SO4 . F 5 SO4 A 1 504 2 SO4 SO4 . G 5 SO4 A 1 505 3 SO4 SO4 . H 6 HOH A 1 601 2 HOH HOH . H 6 HOH A 2 602 3 HOH HOH . H 6 HOH A 3 603 5 HOH HOH . H 6 HOH A 4 604 7 HOH HOH . H 6 HOH A 5 605 8 HOH HOH . H 6 HOH A 6 606 9 HOH HOH . H 6 HOH A 7 607 10 HOH HOH . H 6 HOH A 8 608 11 HOH HOH . H 6 HOH A 9 609 12 HOH HOH . H 6 HOH A 10 610 13 HOH HOH . H 6 HOH A 11 611 14 HOH HOH . H 6 HOH A 12 612 15 HOH HOH . H 6 HOH A 13 613 16 HOH HOH . H 6 HOH A 14 614 17 HOH HOH . H 6 HOH A 15 615 18 HOH HOH . H 6 HOH A 16 616 19 HOH HOH . H 6 HOH A 17 617 20 HOH HOH . H 6 HOH A 18 618 21 HOH HOH . H 6 HOH A 19 619 22 HOH HOH . H 6 HOH A 20 620 23 HOH HOH . H 6 HOH A 21 621 24 HOH HOH . H 6 HOH A 22 622 25 HOH HOH . H 6 HOH A 23 623 26 HOH HOH . H 6 HOH A 24 624 27 HOH HOH . H 6 HOH A 25 625 28 HOH HOH . H 6 HOH A 26 626 29 HOH HOH . H 6 HOH A 27 627 30 HOH HOH . H 6 HOH A 28 628 31 HOH HOH . H 6 HOH A 29 629 32 HOH HOH . H 6 HOH A 30 630 33 HOH HOH . H 6 HOH A 31 631 36 HOH HOH . H 6 HOH A 32 632 37 HOH HOH . H 6 HOH A 33 633 38 HOH HOH . H 6 HOH A 34 634 39 HOH HOH . H 6 HOH A 35 635 40 HOH HOH . H 6 HOH A 36 636 41 HOH HOH . H 6 HOH A 37 637 42 HOH HOH . H 6 HOH A 38 638 43 HOH HOH . H 6 HOH A 39 639 45 HOH HOH . H 6 HOH A 40 640 46 HOH HOH . H 6 HOH A 41 641 47 HOH HOH . H 6 HOH A 42 642 48 HOH HOH . H 6 HOH A 43 643 49 HOH HOH . H 6 HOH A 44 644 50 HOH HOH . H 6 HOH A 45 645 52 HOH HOH . H 6 HOH A 46 646 53 HOH HOH . H 6 HOH A 47 647 54 HOH HOH . H 6 HOH A 48 648 55 HOH HOH . H 6 HOH A 49 649 57 HOH HOH . H 6 HOH A 50 650 58 HOH HOH . H 6 HOH A 51 651 59 HOH HOH . H 6 HOH A 52 652 60 HOH HOH . H 6 HOH A 53 653 61 HOH HOH . I 6 HOH S 1 901 34 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . E 5 -25.8 0.487 6.679 1 116.25 ? S SO4 503 A 1 HETATM 2 O O1 SO4 . . . E 5 -25.55 1.448 5.61 1 116.84 ? O1 SO4 503 A 1 HETATM 3 O O2 SO4 . . . E 5 -24.98 -0.697 6.442 1 116.88 ? O2 SO4 503 A 1 HETATM 4 O O3 SO4 . . . E 5 -27.215 0.118 6.664 1 116.47 ? O3 SO4 503 A 1 HETATM 5 O O4 SO4 . . . E 5 -25.438 1.077 7.968 1 116.45 ? O4 SO4 503 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 5 #