data_4NR5 # _model_server_result.job_id HURlw71Sd5eAXBh0hFXQ2Q _model_server_result.datetime_utc '2024-11-23 22:27:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4nr5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1201}' # _entry.id 4NR5 # _exptl.entry_id 4NR5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 430.542 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-(3,5-dimethyl-1,2-oxazol-4-yl)-1-[2-(morpholin-4-yl)ethyl]-2-(2-phenylethyl)-1H-benzimidazole _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.87 _cell.angle_gamma 90 _cell.entry_id 4NR5 _cell.length_a 24.697 _cell.length_b 44.311 _cell.length_c 52.916 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4NR5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C26 H30 N4 O2' _chem_comp.formula_weight 430.542 _chem_comp.id 2LL _chem_comp.mon_nstd_flag . _chem_comp.name 5-(3,5-dimethyl-1,2-oxazol-4-yl)-1-[2-(morpholin-4-yl)ethyl]-2-(2-phenylethyl)-1H-benzimidazole _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C16 C15 2LL doub 1 n y C16 C17 2LL sing 2 n y C25 C24 2LL sing 3 n n C15 C14 2LL sing 4 n y C17 C12 2LL doub 5 n y O1 C24 2LL sing 6 n y O1 N3 2LL sing 7 n y C24 C2 2LL doub 8 n y C14 C13 2LL doub 9 n y C12 C13 2LL sing 10 n y C12 C11 2LL sing 11 n n N3 C1 2LL doub 12 n y C2 C3 2LL sing 13 n n C2 C1 2LL sing 14 n y C8 C3 2LL doub 15 n y C8 C7 2LL sing 16 n y C3 C4 2LL sing 17 n y C11 C10 2LL sing 18 n n C1 C 2LL sing 19 n n C7 N 2LL sing 20 n y C7 C6 2LL doub 21 n y N C9 2LL doub 22 n y C4 C5 2LL doub 23 n y C9 C10 2LL sing 24 n n C9 N1 2LL sing 25 n y C6 C5 2LL sing 26 n y C6 N1 2LL sing 27 n y N1 C18 2LL sing 28 n n C18 C19 2LL sing 29 n n C19 N2 2LL sing 30 n n C20 N2 2LL sing 31 n n C20 C21 2LL sing 32 n n N2 C23 2LL sing 33 n n C21 O 2LL sing 34 n n C23 C22 2LL sing 35 n n O C22 2LL sing 36 n n C25 H1 2LL sing 37 n n C25 H2 2LL sing 38 n n C25 H3 2LL sing 39 n n C H4 2LL sing 40 n n C H5 2LL sing 41 n n C H6 2LL sing 42 n n C8 H7 2LL sing 43 n n C10 H8 2LL sing 44 n n C10 H9 2LL sing 45 n n C11 H10 2LL sing 46 n n C11 H11 2LL sing 47 n n C17 H12 2LL sing 48 n n C16 H13 2LL sing 49 n n C15 H14 2LL sing 50 n n C14 H15 2LL sing 51 n n C13 H16 2LL sing 52 n n C5 H17 2LL sing 53 n n C4 H18 2LL sing 54 n n C18 H19 2LL sing 55 n n C18 H20 2LL sing 56 n n C19 H21 2LL sing 57 n n C19 H22 2LL sing 58 n n C23 H24 2LL sing 59 n n C23 H25 2LL sing 60 n n C22 H26 2LL sing 61 n n C22 H27 2LL sing 62 n n C21 H28 2LL sing 63 n n C21 H29 2LL sing 64 n n C20 H30 2LL sing 65 n n C20 H31 2LL sing 66 n n # _atom_sites.entry_id 4NR5 _atom_sites.fract_transf_matrix[1][1] 0.040491 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004163 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022568 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018997 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 2LL A 1 1201 1 2LL DRG . C 3 NO3 A 1 1202 1 NO3 NO3 . D 4 EDO A 1 1203 1 EDO EDO . E 5 HOH A 1 1301 1 HOH HOH . E 5 HOH A 2 1302 3 HOH HOH . E 5 HOH A 3 1303 4 HOH HOH . E 5 HOH A 4 1304 6 HOH HOH . E 5 HOH A 5 1305 9 HOH HOH . E 5 HOH A 6 1306 10 HOH HOH . E 5 HOH A 7 1307 11 HOH HOH . E 5 HOH A 8 1308 12 HOH HOH . E 5 HOH A 9 1309 13 HOH HOH . E 5 HOH A 10 1310 15 HOH HOH . E 5 HOH A 11 1311 19 HOH HOH . E 5 HOH A 12 1312 20 HOH HOH . E 5 HOH A 13 1313 21 HOH HOH . E 5 HOH A 14 1314 22 HOH HOH . E 5 HOH A 15 1315 23 HOH HOH . E 5 HOH A 16 1316 25 HOH HOH . E 5 HOH A 17 1317 26 HOH HOH . E 5 HOH A 18 1318 27 HOH HOH . E 5 HOH A 19 1319 28 HOH HOH . E 5 HOH A 20 1320 29 HOH HOH . E 5 HOH A 21 1321 31 HOH HOH . E 5 HOH A 22 1322 34 HOH HOH . E 5 HOH A 23 1323 35 HOH HOH . E 5 HOH A 24 1324 36 HOH HOH . E 5 HOH A 25 1325 39 HOH HOH . E 5 HOH A 26 1326 40 HOH HOH . E 5 HOH A 27 1327 41 HOH HOH . E 5 HOH A 28 1328 42 HOH HOH . E 5 HOH A 29 1329 43 HOH HOH . E 5 HOH A 30 1330 44 HOH HOH . E 5 HOH A 31 1331 47 HOH HOH . E 5 HOH A 32 1332 48 HOH HOH . E 5 HOH A 33 1333 49 HOH HOH . E 5 HOH A 34 1334 51 HOH HOH . E 5 HOH A 35 1335 53 HOH HOH . E 5 HOH A 36 1336 59 HOH HOH . E 5 HOH A 37 1337 60 HOH HOH . E 5 HOH A 38 1338 61 HOH HOH . E 5 HOH A 39 1339 64 HOH HOH . E 5 HOH A 40 1340 65 HOH HOH . E 5 HOH A 41 1341 66 HOH HOH . E 5 HOH A 42 1342 70 HOH HOH . E 5 HOH A 43 1343 71 HOH HOH . E 5 HOH A 44 1344 72 HOH HOH . E 5 HOH A 45 1345 73 HOH HOH . E 5 HOH A 46 1346 74 HOH HOH . E 5 HOH A 47 1347 76 HOH HOH . E 5 HOH A 48 1348 77 HOH HOH . E 5 HOH A 49 1349 80 HOH HOH . E 5 HOH A 50 1350 81 HOH HOH . E 5 HOH A 51 1351 82 HOH HOH . E 5 HOH A 52 1352 85 HOH HOH . E 5 HOH A 53 1353 87 HOH HOH . E 5 HOH A 54 1354 88 HOH HOH . E 5 HOH A 55 1355 89 HOH HOH . E 5 HOH A 56 1356 90 HOH HOH . E 5 HOH A 57 1357 91 HOH HOH . E 5 HOH A 58 1358 92 HOH HOH . E 5 HOH A 59 1359 93 HOH HOH . E 5 HOH A 60 1360 94 HOH HOH . E 5 HOH A 61 1361 96 HOH HOH . E 5 HOH A 62 1362 97 HOH HOH . E 5 HOH A 63 1363 98 HOH HOH . E 5 HOH A 64 1364 99 HOH HOH . E 5 HOH A 65 1365 100 HOH HOH . E 5 HOH A 66 1366 101 HOH HOH . E 5 HOH A 67 1367 103 HOH HOH . E 5 HOH A 68 1368 104 HOH HOH . E 5 HOH A 69 1369 105 HOH HOH . E 5 HOH A 70 1370 106 HOH HOH . E 5 HOH A 71 1371 107 HOH HOH . E 5 HOH A 72 1372 109 HOH HOH . E 5 HOH A 73 1373 110 HOH HOH . E 5 HOH A 74 1374 111 HOH HOH . E 5 HOH A 75 1375 112 HOH HOH . E 5 HOH A 76 1376 113 HOH HOH . E 5 HOH A 77 1377 114 HOH HOH . E 5 HOH A 78 1378 115 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C25 2LL . . . B 2 -2.299 19.143 24.802 1 22.9 ? C25 2LL 1201 A 1 HETATM 2 C C24 2LL . . . B 2 -2.827 19.782 26.063 1 23.23 ? C24 2LL 1201 A 1 HETATM 3 O O1 2LL . . . B 2 -3.983 20.499 25.968 1 22.28 ? O1 2LL 1201 A 1 HETATM 4 N N3 2LL . . . B 2 -4.374 21.049 27.185 1 19.7 ? N3 2LL 1201 A 1 HETATM 5 C C1 2LL . . . B 2 -3.476 20.682 28.093 1 17.2 ? C1 2LL 1201 A 1 HETATM 6 C C 2LL . . . B 2 -3.499 21.085 29.477 1 19.03 ? C 2LL 1201 A 1 HETATM 7 C C2 2LL . . . B 2 -2.422 19.844 27.412 1 17.92 ? C2 2LL 1201 A 1 HETATM 8 C C3 2LL . . . B 2 -1.231 19.238 28.001 1 20.06 ? C3 2LL 1201 A 1 HETATM 9 C C8 2LL . . . B 2 -1.012 17.865 27.734 1 19.08 ? C8 2LL 1201 A 1 HETATM 10 C C7 2LL . . . B 2 0.159 17.343 28.307 1 20.53 ? C7 2LL 1201 A 1 HETATM 11 N N 2LL . . . B 2 0.63 15.975 28.331 1 21.35 ? N 2LL 1201 A 1 HETATM 12 C C9 2LL . . . B 2 1.803 16.075 29.031 1 19.36 ? C9 2LL 1201 A 1 HETATM 13 C C10 2LL . . . B 2 2.747 14.919 29.357 1 23.9 ? C10 2LL 1201 A 1 HETATM 14 C C11 2LL . . . B 2 3.052 14.145 28.047 1 29.76 ? C11 2LL 1201 A 1 HETATM 15 C C12 2LL . . . B 2 3.854 14.945 27.013 1 28.27 ? C12 2LL 1201 A 1 HETATM 16 C C17 2LL . . . B 2 3.366 15.063 25.694 1 33.95 ? C17 2LL 1201 A 1 HETATM 17 C C16 2LL . . . B 2 4.167 15.675 24.674 1 34.78 ? C16 2LL 1201 A 1 HETATM 18 C C15 2LL . . . B 2 5.419 16.142 25.038 1 29.62 ? C15 2LL 1201 A 1 HETATM 19 C C14 2LL . . . B 2 5.872 16.032 26.342 1 36.64 ? C14 2LL 1201 A 1 HETATM 20 C C13 2LL . . . B 2 5.11 15.443 27.345 1 48.09 ? C13 2LL 1201 A 1 HETATM 21 N N1 2LL . . . B 2 2.081 17.365 29.435 1 25.87 ? N1 2LL 1201 A 1 HETATM 22 C C6 2LL . . . B 2 1.049 18.173 29.036 1 20.28 ? C6 2LL 1201 A 1 HETATM 23 C C5 2LL . . . B 2 0.805 19.547 29.285 1 20.54 ? C5 2LL 1201 A 1 HETATM 24 C C4 2LL . . . B 2 -0.353 20 28.787 1 17.93 ? C4 2LL 1201 A 1 HETATM 25 C C18 2LL . . . B 2 3.311 17.895 29.926 1 30.31 ? C18 2LL 1201 A 1 HETATM 26 C C19 2LL . . . B 2 3.322 17.931 31.383 1 27.21 ? C19 2LL 1201 A 1 HETATM 27 N N2 2LL . . . B 2 4.674 18.496 31.792 1 41.63 ? N2 2LL 1201 A 1 HETATM 28 C C23 2LL . . . B 2 5.132 17.952 33.127 1 37.38 ? C23 2LL 1201 A 1 HETATM 29 C C22 2LL . . . B 2 6.297 18.785 33.788 1 52.33 ? C22 2LL 1201 A 1 HETATM 30 O O 2LL . . . B 2 6.103 20.206 33.665 1 39.07 ? O 2LL 1201 A 1 HETATM 31 C C21 2LL . . . B 2 5.897 20.672 32.364 1 33.59 ? C21 2LL 1201 A 1 HETATM 32 C C20 2LL . . . B 2 4.622 19.972 31.73 1 27.24 ? C20 2LL 1201 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 250 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 32 #