data_4NR9 # _model_server_result.job_id diLXE0v4epG2ymhrg4n7IA _model_server_result.datetime_utc '2024-11-26 17:49:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4nr9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":2005}' # _entry.id 4NR9 # _exptl.entry_id 4NR9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 188.224 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N(6)-ACETYLLYSINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4NR9 _cell.length_a 82.439 _cell.length_b 96.754 _cell.length_c 57.754 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4NR9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C8 H16 N2 O3' _chem_comp.formula_weight 188.224 _chem_comp.id ALY _chem_comp.mon_nstd_flag n _chem_comp.name N(6)-ACETYLLYSINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH CH ALY doub 13 n n CH CH3 ALY sing 14 n n CH NZ ALY sing 15 n n CH3 HH31 ALY sing 16 n n CH3 HH32 ALY sing 17 n n CH3 HH33 ALY sing 18 n n NZ CE ALY sing 19 n n NZ HZ ALY sing 20 n n CE CD ALY sing 21 n n CE HE3 ALY sing 22 n n CE HE2 ALY sing 23 n n CD CG ALY sing 24 n n CD HD3 ALY sing 25 n n CD HD2 ALY sing 26 n n CG CB ALY sing 27 n n CG HG3 ALY sing 28 n n CG HG2 ALY sing 29 n n CB CA ALY sing 30 n n CB HB3 ALY sing 31 n n CB HB2 ALY sing 32 n n CA N ALY sing 33 n n CA C ALY sing 34 n n CA HA ALY sing 35 n n N H ALY sing 36 n n N H2 ALY sing 37 n n C O ALY doub 38 n n C OXT ALY sing 39 n n OXT HXT ALY sing 40 n n # _atom_sites.entry_id 4NR9 _atom_sites.fract_transf_matrix[1][1] 0.01213 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010335 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017315 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 2001 1 EDO EDO . C 2 EDO A 1 2002 1 EDO EDO . D 2 EDO A 1 2003 1 EDO EDO . E 2 EDO A 1 2004 1 EDO EDO . F 3 ALY A 1 2005 1 ALY ALY . G 4 HOH A 1 2101 3 HOH HOH . G 4 HOH A 2 2102 4 HOH HOH . G 4 HOH A 3 2103 5 HOH HOH . G 4 HOH A 4 2104 6 HOH HOH . G 4 HOH A 5 2105 7 HOH HOH . G 4 HOH A 6 2106 9 HOH HOH . G 4 HOH A 7 2107 10 HOH HOH . G 4 HOH A 8 2108 11 HOH HOH . G 4 HOH A 9 2109 12 HOH HOH . G 4 HOH A 10 2110 13 HOH HOH . G 4 HOH A 11 2111 14 HOH HOH . G 4 HOH A 12 2112 15 HOH HOH . G 4 HOH A 13 2113 16 HOH HOH . G 4 HOH A 14 2114 17 HOH HOH . G 4 HOH A 15 2115 18 HOH HOH . G 4 HOH A 16 2116 19 HOH HOH . G 4 HOH A 17 2117 20 HOH HOH . G 4 HOH A 18 2118 21 HOH HOH . G 4 HOH A 19 2119 22 HOH HOH . G 4 HOH A 20 2120 23 HOH HOH . G 4 HOH A 21 2121 24 HOH HOH . G 4 HOH A 22 2122 25 HOH HOH . G 4 HOH A 23 2123 26 HOH HOH . G 4 HOH A 24 2124 27 HOH HOH . G 4 HOH A 25 2125 28 HOH HOH . G 4 HOH A 26 2126 29 HOH HOH . G 4 HOH A 27 2127 30 HOH HOH . G 4 HOH A 28 2128 31 HOH HOH . G 4 HOH A 29 2129 32 HOH HOH . G 4 HOH A 30 2130 33 HOH HOH . G 4 HOH A 31 2131 34 HOH HOH . G 4 HOH A 32 2132 35 HOH HOH . G 4 HOH A 33 2133 38 HOH HOH . G 4 HOH A 34 2134 39 HOH HOH . G 4 HOH A 35 2135 40 HOH HOH . G 4 HOH A 36 2136 41 HOH HOH . G 4 HOH A 37 2137 42 HOH HOH . G 4 HOH A 38 2138 43 HOH HOH . G 4 HOH A 39 2139 44 HOH HOH . G 4 HOH A 40 2140 45 HOH HOH . G 4 HOH A 41 2141 46 HOH HOH . G 4 HOH A 42 2142 47 HOH HOH . G 4 HOH A 43 2143 48 HOH HOH . G 4 HOH A 44 2144 49 HOH HOH . G 4 HOH A 45 2145 50 HOH HOH . G 4 HOH A 46 2146 51 HOH HOH . G 4 HOH A 47 2147 52 HOH HOH . G 4 HOH A 48 2148 53 HOH HOH . G 4 HOH A 49 2149 54 HOH HOH . G 4 HOH A 50 2150 56 HOH HOH . G 4 HOH A 51 2151 57 HOH HOH . G 4 HOH A 52 2152 58 HOH HOH . G 4 HOH A 53 2153 59 HOH HOH . G 4 HOH A 54 2154 60 HOH HOH . G 4 HOH A 55 2155 61 HOH HOH . G 4 HOH A 56 2156 62 HOH HOH . G 4 HOH A 57 2157 63 HOH HOH . G 4 HOH A 58 2158 65 HOH HOH . G 4 HOH A 59 2159 66 HOH HOH . G 4 HOH A 60 2160 67 HOH HOH . G 4 HOH A 61 2161 68 HOH HOH . G 4 HOH A 62 2162 69 HOH HOH . G 4 HOH A 63 2163 70 HOH HOH . G 4 HOH A 64 2164 71 HOH HOH . G 4 HOH A 65 2165 72 HOH HOH . G 4 HOH A 66 2166 73 HOH HOH . G 4 HOH A 67 2167 75 HOH HOH . G 4 HOH A 68 2168 76 HOH HOH . G 4 HOH A 69 2169 77 HOH HOH . G 4 HOH A 70 2170 78 HOH HOH . G 4 HOH A 71 2171 79 HOH HOH . G 4 HOH A 72 2172 80 HOH HOH . G 4 HOH A 73 2173 81 HOH HOH . G 4 HOH A 74 2174 82 HOH HOH . G 4 HOH A 75 2175 83 HOH HOH . G 4 HOH A 76 2176 84 HOH HOH . G 4 HOH A 77 2177 85 HOH HOH . G 4 HOH A 78 2178 86 HOH HOH . G 4 HOH A 79 2179 87 HOH HOH . G 4 HOH A 80 2180 88 HOH HOH . G 4 HOH A 81 2181 89 HOH HOH . G 4 HOH A 82 2182 90 HOH HOH . G 4 HOH A 83 2183 91 HOH HOH . G 4 HOH A 84 2184 92 HOH HOH . G 4 HOH A 85 2185 93 HOH HOH . G 4 HOH A 86 2186 94 HOH HOH . G 4 HOH A 87 2187 95 HOH HOH . G 4 HOH A 88 2188 96 HOH HOH . G 4 HOH A 89 2189 97 HOH HOH . G 4 HOH A 90 2190 98 HOH HOH . G 4 HOH A 91 2191 99 HOH HOH . G 4 HOH A 92 2192 100 HOH HOH . G 4 HOH A 93 2193 101 HOH HOH . G 4 HOH A 94 2194 102 HOH HOH . G 4 HOH A 95 2195 103 HOH HOH . G 4 HOH A 96 2196 104 HOH HOH . G 4 HOH A 97 2197 105 HOH HOH . G 4 HOH A 98 2198 107 HOH HOH . G 4 HOH A 99 2199 108 HOH HOH . G 4 HOH A 100 2200 109 HOH HOH . G 4 HOH A 101 2201 110 HOH HOH . G 4 HOH A 102 2202 111 HOH HOH . G 4 HOH A 103 2203 112 HOH HOH . G 4 HOH A 104 2204 113 HOH HOH . G 4 HOH A 105 2205 114 HOH HOH . G 4 HOH A 106 2206 115 HOH HOH . G 4 HOH A 107 2207 116 HOH HOH . G 4 HOH A 108 2208 117 HOH HOH . G 4 HOH A 109 2209 118 HOH HOH . G 4 HOH A 110 2210 119 HOH HOH . G 4 HOH A 111 2211 120 HOH HOH . G 4 HOH A 112 2212 121 HOH HOH . G 4 HOH A 113 2213 122 HOH HOH . G 4 HOH A 114 2214 123 HOH HOH . G 4 HOH A 115 2215 124 HOH HOH . G 4 HOH A 116 2216 125 HOH HOH . G 4 HOH A 117 2217 126 HOH HOH . G 4 HOH A 118 2218 127 HOH HOH . G 4 HOH A 119 2219 128 HOH HOH . G 4 HOH A 120 2220 129 HOH HOH . G 4 HOH A 121 2221 130 HOH HOH . G 4 HOH A 122 2222 131 HOH HOH . G 4 HOH A 123 2223 132 HOH HOH . G 4 HOH A 124 2224 133 HOH HOH . G 4 HOH A 125 2225 134 HOH HOH . G 4 HOH A 126 2226 135 HOH HOH . G 4 HOH A 127 2227 136 HOH HOH . G 4 HOH A 128 2228 137 HOH HOH . G 4 HOH A 129 2229 138 HOH HOH . G 4 HOH A 130 2230 139 HOH HOH . G 4 HOH A 131 2231 140 HOH HOH . G 4 HOH A 132 2232 141 HOH HOH . G 4 HOH A 133 2233 142 HOH HOH . G 4 HOH A 134 2234 143 HOH HOH . G 4 HOH A 135 2235 144 HOH HOH . G 4 HOH A 136 2236 145 HOH HOH . G 4 HOH A 137 2237 146 HOH HOH . G 4 HOH A 138 2238 148 HOH HOH . G 4 HOH A 139 2239 149 HOH HOH . G 4 HOH A 140 2240 150 HOH HOH . G 4 HOH A 141 2241 151 HOH HOH . G 4 HOH A 142 2242 153 HOH HOH . G 4 HOH A 143 2243 154 HOH HOH . G 4 HOH A 144 2244 155 HOH HOH . G 4 HOH A 145 2245 156 HOH HOH . G 4 HOH A 146 2246 157 HOH HOH . G 4 HOH A 147 2247 158 HOH HOH . G 4 HOH A 148 2248 160 HOH HOH . G 4 HOH A 149 2249 161 HOH HOH . G 4 HOH A 150 2250 162 HOH HOH . G 4 HOH A 151 2251 163 HOH HOH . G 4 HOH A 152 2252 164 HOH HOH . G 4 HOH A 153 2253 165 HOH HOH . G 4 HOH A 154 2254 166 HOH HOH . G 4 HOH A 155 2255 167 HOH HOH . G 4 HOH A 156 2256 168 HOH HOH . G 4 HOH A 157 2257 169 HOH HOH . G 4 HOH A 158 2258 170 HOH HOH . G 4 HOH A 159 2259 171 HOH HOH . G 4 HOH A 160 2260 172 HOH HOH . G 4 HOH A 161 2261 173 HOH HOH . G 4 HOH A 162 2262 174 HOH HOH . G 4 HOH A 163 2263 175 HOH HOH . G 4 HOH A 164 2264 176 HOH HOH . G 4 HOH A 165 2265 177 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OH ALY . . . F 3 66.258 39.792 -1.053 1 32.88 ? OH ALY 2005 A 1 HETATM 2 C CH ALY . . . F 3 67.285 39.19 -0.748 1 37.31 ? CH ALY 2005 A 1 HETATM 3 C CH3 ALY . . . F 3 67.428 37.685 -0.784 1 40.8 ? CH3 ALY 2005 A 1 HETATM 4 N NZ ALY . . . F 3 68.35 39.835 -0.3 1 40.42 ? NZ ALY 2005 A 1 HETATM 5 C CE ALY . . . F 3 68.416 41.282 -0.171 1 40.97 ? CE ALY 2005 A 1 HETATM 6 C CD ALY . . . F 3 68.761 41.86 -1.553 1 43.42 ? CD ALY 2005 A 1 HETATM 7 C CG ALY . . . F 3 70.264 41.786 -1.743 1 46.43 ? CG ALY 2005 A 1 HETATM 8 C CB ALY . . . F 3 70.715 42.815 -2.784 1 48.96 ? CB ALY 2005 A 1 HETATM 9 C CA ALY . . . F 3 71.929 42.255 -3.526 1 48.64 ? CA ALY 2005 A 1 HETATM 10 N N ALY . . . F 3 73.112 42.233 -2.605 1 52.98 ? N ALY 2005 A 1 HETATM 11 C C ALY . . . F 3 72.212 43.073 -4.737 1 49.66 ? C ALY 2005 A 1 HETATM 12 O O ALY . . . F 3 73.33 43.57 -4.821 1 50.21 ? O ALY 2005 A 1 HETATM 13 O OXT ALY . . . F 3 71.362 43.262 -5.629 1 46.26 ? OXT ALY 2005 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 13 #